UHGV-1535880 (vOTU-134823)

Viral Genome: UHGV-1535880

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1535880
vOTU ID	vOTU-134823
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0233080
Associated BioSample	SAMN02333944
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.4 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9783
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.69
Jumbo phage	No

Genome content
Genome length (bp)	33,600
GC content	38.03%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	95%
Average CDS length (bps)	626.71
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.4)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1535880_3	phrog_2566	45.8	0.00000000000096	N/A	unknown function
PHROG	UHGV-1535880_4	phrog_6616	168.7	0	tail protein	tail
UniRef90	UHGV-1535880_4	UniRef90_A0A8D9PGP3	767.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1535880_4	1499683.CCFF01000014_gene3896	271.0	0	Phage minor structural protein	N/A
COG	UHGV-1535880_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1535880_4	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_5	phrog_1401	65.3	9.3e-19	N/A	unknown function
UniRef90	UHGV-1535880_5	UniRef90_UPI00129D2DCF	67.8	0.00000000000699	N/A	N/A
eggNOG-mapper	UHGV-1535880_5	1294142.CINTURNW_1705	58.5	0.00000000426	N/A	N/A
structural_annotation	UHGV-1535880_5	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_6	phrog_1194	69.8	3.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1535880_6	33035.JPJF01000093_gene2242	148.0	9.80909e-45	N/A	N/A
structural_annotation	UHGV-1535880_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_7	phrog_1535	279.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1535880_7	UniRef90_A0A1C5PIN9	504.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1535880_7	33035.JPJF01000093_gene2243	363.0	0	phage tail tape measure protein	N/A
COG	UHGV-1535880_7	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1535880_7	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_8	phrog_8355	115.9	8.2e-35	N/A	unknown function
UniRef90	UHGV-1535880_8	UniRef90_UPI0006BBA9AA	176.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1535880_8	394503.Ccel_3036	120.0	2.14e-33	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1535880_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1535880_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_9	phrog_8300	67.4	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1535880_9	1151292.QEW_2425	60.8	0.000000000154	N/A	N/A
structural_annotation	UHGV-1535880_9	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_10	phrog_820	116.0	2.3e-34	major tail protein	tail
UniRef90	UHGV-1535880_10	UniRef90_T3DDR1	174.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-1535880_10	1151292.QEW_2426	174.0	0	N/A	N/A
structural_annotation	UHGV-1535880_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_11	phrog_2595	86.6	2.6e-25	head-tail connector protein	connector
UniRef90	UHGV-1535880_11	UniRef90_UPI00164BAA81	137.0	2.57e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-1535880_11	742740.HMPREF9474_03510	128.0	1.84e-36	N/A	N/A
Pfam	UHGV-1535880_11	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1535880_11	PF12691,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-1535880_12	UniRef90_UPI0018E07468	95.9	1.66e-22	minor capsid protein	N/A
eggNOG-mapper	UHGV-1535880_12	33035.JPJF01000093_gene2248	169.0	0	N/A	N/A
structural_annotation	UHGV-1535880_12	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_13	phrog_8710	124.5	4.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-1535880_13	742740.HMPREF9474_03508	121.0	2.34e-34	N/A	N/A
structural_annotation	UHGV-1535880_13	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_14	phrog_541	67.9	1.5e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-1535880_14	1304866.K413DRAFT_0783	146.0	7.84727e-44	N/A	N/A
PHROG	UHGV-1535880_16	phrog_422	211.1	0	major head protein	head and packaging
UniRef90	UHGV-1535880_16	UniRef90_W0U896	209.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1535880_16	1121947.AUHK01000002_gene935	217.0	0	N/A	N/A
structural_annotation	UHGV-1535880_16	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_17	phrog_2303	138.6	4.39994e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1535880_17	483218.BACPEC_01156	140.0	2.1e-38	N/A	N/A
PHROG	UHGV-1535880_19	phrog_581	248.3	0	minor head protein	head and packaging
UniRef90	UHGV-1535880_19	UniRef90_A0A413YU28	649.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1535880_19	33035.JPJF01000093_gene2255	438.0	0	N/A	N/A
Pfam	UHGV-1535880_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1535880_19	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1535880_19	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_20	phrog_533	285.3	0	portal protein	head and packaging
UniRef90	UHGV-1535880_20	UniRef90_A0A413YU90	944.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1535880_20	33035.JPJF01000093_gene2257	548.0	0	N/A	N/A
Pfam	UHGV-1535880_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1535880_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1535880_21	K06909	88.2	1.2e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1535880_21	phrog_2	64.8	1.9e-18	terminase large subunit	head and packaging
UniRef90	UHGV-1535880_21	UniRef90_A0A413YU24	944.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1535880_21	1282664.H354_06621	517.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1535880_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1535880_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1535880_21	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1535880_22	K07474	152.7	4.2039e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1535880_22	phrog_51	163.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-1535880_22	UniRef90_A0A413YU49	359.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1535880_22	1499683.CCFF01000014_gene3916	149.0	9.94922e-43	Terminase small subunit	N/A
Pfam	UHGV-1535880_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1535880_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1535880_22	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_23	phrog_36	65.0	1.4e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1535880_23	397290.C810_01391	98.6	3e-24	N/A	N/A
structural_annotation	UHGV-1535880_23	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_24	phrog_625	64.2	1.3e-18	N/A	unknown function
UniRef90	UHGV-1535880_24	UniRef90_A0A413YU40	228.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1535880_24	397290.C810_01502	125.0	2.2e-35	N/A	N/A
structural_annotation	UHGV-1535880_24	PF12961,COG2028	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1535880_25	397290.C810_01505	138.0	1.85994e-41	N/A	N/A
PHROG	UHGV-1535880_26	phrog_20593	110.6	6.7e-33	N/A	unknown function
eggNOG-mapper	UHGV-1535880_29	1235793.C809_02210	94.4	2.17e-21	N/A	N/A
KOfam	UHGV-1535880_33	K00558	230.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1535880_33	phrog_116	264.4	0	DNA methyltransferase	other
UniRef90	UHGV-1535880_33	UniRef90_A0A174GZ53	936.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1535880_33	1235800.C819_02255	717.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1535880_33	MTase_II_00020	116.7	7.7e-37	Type II methyltransferase	RM
Pfam	UHGV-1535880_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1535880_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1535880_33	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1535880_34	K07319	91.2	6.6e-27	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1535880_34	phrog_16	225.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1535880_34	UniRef90_A0A356C6C6	1491.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-1535880_34	1298920.KI911353_gene2709	1395.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1535880_34	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1535880_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1535880_34	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1535880_34	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_36	phrog_7566	95.5	3.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-1535880_36	1235800.C819_00511	100.0	2.3e-24	N/A	N/A
structural_annotation	UHGV-1535880_38	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-1535880_39	K03469	66.6	5.3e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1535880_39	phrog_531	65.7	7.6e-19	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1535880_39	UniRef90_A0A413YU26	261.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1535880_39	1232453.BAIF02000027_gene4200	80.1	4.21e-17	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-1535880_39	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1535880_39	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1535880_39	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_40	phrog_3584	165.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1535880_40	642492.Clole_0725	152.0	1.02995e-42	N/A	N/A
structural_annotation	UHGV-1535880_40	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-1535880_41	UniRef90_A0A356C6A4	154.0	0	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-1535880_41	318464.IO99_13850	65.5	0.000000000000379	Helix-turn-helix domain	N/A
Pfam	UHGV-1535880_41	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1535880_41	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1535880_41	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1535880_45	UniRef90_A0A413YU34	128.0	1.35e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1535880_45	706433.HMPREF9430_01294	80.5	3.64e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1535880_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1535880_45	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1535880_46	K22299	64.2	3.1e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1535880_46	phrog_8	75.8	8.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1535880_46	UniRef90_A0A413YU20	253.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1535880_46	553973.CLOHYLEM_07297	89.4	2.29e-21	Transcriptional	N/A
PADLOC	UHGV-1535880_46	retron_type_VI_hth_cluster2_1	53.4	0.000000000000005	N/A	Retron
Pfam	UHGV-1535880_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1535880_46	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1535880_46	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1535880_47	phrog_20936	53.0	0.000000000000006	N/A	unknown function
UniRef90	UHGV-1535880_47	UniRef90_UPI0013E038FD	54.7	0.0000000326	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1535880_47	861450.HMPREF0080_02020	50.1	0.000000496	N/A	N/A
structural_annotation	UHGV-1535880_47	PF06114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1535880_48	658655.HMPREF0988_00902	45.8	0.00000361	N/A	N/A
PHROG	UHGV-1535880_49	phrog_3291	55.1	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1535880_49	658086.HMPREF0994_06176	55.8	0.000000000799	N/A	N/A
PHROG	UHGV-1535880_50	phrog_1758	156.4	0	acetyltransferase	other
UniRef90	UHGV-1535880_50	UniRef90_A0A6L9H8L8	246.0	0	N-acetyltransferase	N/A
eggNOG-mapper	UHGV-1535880_50	1235798.C817_03484	242.0	0	acetyltransferase	N/A
COG	UHGV-1535880_50	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-1535880_50	PF13673,MF_02210,NF000360,COG2153	N/A	N/A	N/A	N/A
KOfam	UHGV-1535880_51	K14059	225.5	0	int; integrase	N/A
PHROG	UHGV-1535880_51	phrog_1	207.2	0	integrase	integration and excision
UniRef90	UHGV-1535880_51	UniRef90_R6AKI6	817.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1535880_51	536233.CLO_0855	393.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-1535880_51	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1535880_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1535880_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1535880_51	PF00589,PF12286,PF14659,MF_01808,NF002331,COG4974	N/A	N/A	N/A	N/A