UHGV-1538076 (vOTU-062621)

Viral Genome: UHGV-1538076

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1538076
vOTU ID	vOTU-062621
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0300546
Associated BioSample	SAMEA3541547
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9822
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.18
Jumbo phage	No

Genome content
Genome length (bp)	41,818
GC content	37.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	96%
Average CDS length (bps)	690.36
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1538076_1	K01875	102.8	3.5e-30	SARS, serS; seryl-tRNA synthetase [EC:6.1.1.11]	N/A
PHROG	UHGV-1538076_1	phrog_16140	125.3	4.5e-37	N/A	unknown function
UniRef90	UHGV-1538076_1	UniRef90_A0A7V5K9X2	87.8	6.08e-19	Serine--tRNA ligase (Fragment)	N/A
eggNOG-mapper	UHGV-1538076_1	1128111.HMPREF0870_01266	231.0	0	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)	N/A
Pfam	UHGV-1538076_1	PF02403	N/A	N/A	Seryl-tRNA synthetase N-terminal domain	Seryl_tRNA_N
COG	UHGV-1538076_1	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
PHROG	UHGV-1538076_3	phrog_10797	215.0	0	N/A	unknown function
UniRef90	UHGV-1538076_3	UniRef90_A0A1B1I041	132.0	2.81e-35	Glycoprotease	N/A
eggNOG-mapper	UHGV-1538076_3	883156.HMPREF9282_01266	148.0	8.01543e-43	N/A	N/A
structural_annotation	UHGV-1538076_3	PF06531	N/A	N/A	N/A	N/A
KOfam	UHGV-1538076_4	K08640	106.9	3e-31	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1538076_4	phrog_894	105.3	6.8e-31	endolysin	lysis
UniRef90	UHGV-1538076_4	UniRef90_A0A496P8E9	278.0	0	N/A	N/A
eggNOG-mapper	UHGV-1538076_4	683083.C414_000080020	99.0	8.46e-25	N/A	N/A
Pfam	UHGV-1538076_4	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1538076_4	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1538076_4	PF08291,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_6	phrog_23091	218.8	0	N/A	unknown function
structural_annotation	UHGV-1538076_6	PF05105,NF035928	N/A	N/A	N/A	N/A
KOfam	UHGV-1538076_8	K13925	41.7	0.000000000011	pfbA; plasmin and fibronectin-binding protein A	N/A
UniRef90	UHGV-1538076_8	UniRef90_A0A2S7ZGN5	1242.0	0	Pectate_lyase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1538076_8	1443111.JASG01000004_gene3704	61.2	0.00000122	Pectate lyase superfamily protein	N/A
Pfam	UHGV-1538076_8	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-1538076_8	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-1538076_8	PF05096,PF03906,MF_03008,TIGR03866,COG3204	N/A	N/A	N/A	N/A
KOfam	UHGV-1538076_9	K20478	92.7	4.2e-28	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1538076_9	phrog_9880	259.0	0	N/A	unknown function
UniRef90	UHGV-1538076_9	UniRef90_D1YMD8	3278.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1538076_9	699218.HMPREF0889_0277	475.0	0	N/A	N/A
Pfam	UHGV-1538076_9	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-1538076_10	1321781.HMPREF1985_01880	57.0	0.00000926	N/A	N/A
structural_annotation	UHGV-1538076_10	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_11	phrog_418	70.8	1.7e-20	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1538076_11	1401067.HMPREF0872_06765	176.0	0	N/A	N/A
structural_annotation	UHGV-1538076_11	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_12	phrog_308	75.4	8e-22	internal virion protein	head and packaging
UniRef90	UHGV-1538076_12	UniRef90_UPI001D08FF44	331.0	0	N/A	N/A
Pfam	UHGV-1538076_12	PF11090	N/A	N/A	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
structural_annotation	UHGV-1538076_12	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_13	phrog_376	643.3	0	tail protein	tail
UniRef90	UHGV-1538076_13	UniRef90_A0A3A4JUE0	321.0	0	E1_FCCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1538076_13	1401067.HMPREF0872_06775	645.0	0	N/A	N/A
structural_annotation	UHGV-1538076_13	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_14	phrog_394	167.3	0	tail protein	tail
eggNOG-mapper	UHGV-1538076_14	1401067.HMPREF0872_06780	212.0	0	N/A	N/A
structural_annotation	UHGV-1538076_14	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_16	phrog_427	75.4	7.2e-22	N/A	unknown function
structural_annotation	UHGV-1538076_16	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_17	phrog_212	178.4	0	major head protein	head and packaging
UniRef90	UHGV-1538076_17	UniRef90_A0A239Z8I8	421.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-1538076_17	1401067.HMPREF0872_06795	454.0	0	N/A	N/A
Pfam	UHGV-1538076_17	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1538076_17	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_18	phrog_458	87.2	2.6e-25	protease	other
eggNOG-mapper	UHGV-1538076_18	1401067.HMPREF0872_06800	121.0	1.02e-31	N/A	N/A
PHROG	UHGV-1538076_19	phrog_528	66.6	2.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1538076_19	568816.Acin_1833	61.2	0.0000000000946	N/A	N/A
PHROG	UHGV-1538076_20	phrog_332	464.4	0	head-tail adaptor	connector
UniRef90	UHGV-1538076_20	UniRef90_UPI001D07F371	1082.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1538076_20	1401067.HMPREF0872_06810	598.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1538076_20	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1538076_20	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_22	phrog_5902	127.3	1e-37	N/A	unknown function
UniRef90	UHGV-1538076_22	UniRef90_A0A7G6SG38	402.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1538076_22	1123288.SOV_1c10630	397.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-1538076_22	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1538076_22	PF20441,MF_04148,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_23	phrog_5902	80.6	2.3e-23	N/A	unknown function
UniRef90	UHGV-1538076_23	UniRef90_A0A496PFR2	234.0	0	Terminase (Fragment)	N/A
eggNOG-mapper	UHGV-1538076_23	1200557.JHWV01000001_gene277	154.0	5.70328e-43	Terminase RNaseH-like domain	N/A
COG	UHGV-1538076_23	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
KOfam	UHGV-1538076_24	K07474	126.3	4.4e-37	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1538076_24	phrog_51	132.5	2.2e-39	terminase small subunit	head and packaging
UniRef90	UHGV-1538076_24	UniRef90_UPI001D065029	209.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1538076_24	1280689.AUJC01000003_gene961	128.0	2.47e-36	Terminase small subunit	N/A
Pfam	UHGV-1538076_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1538076_24	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1538076_24	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_28	phrog_36	55.5	0.0000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-1538076_28	UniRef90_UPI0013DFE289	60.5	0.0000000112	N/A	N/A
eggNOG-mapper	UHGV-1538076_28	706434.HMPREF9429_00383	58.2	0.000000015	N/A	N/A
structural_annotation	UHGV-1538076_28	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_29	phrog_21026	66.6	1e-19	N/A	unknown function
PHROG	UHGV-1538076_30	phrog_419	108.2	9.2e-32	N/A	unknown function
UniRef90	UHGV-1538076_30	UniRef90_A0A6G6XL02	92.8	6.86e-23	MazG-like nucleotide pyrophosphohydrolase	N/A
eggNOG-mapper	UHGV-1538076_30	1277892.M1IRA5_9CAUD	94.7	1.94e-24	N/A	N/A
structural_annotation	UHGV-1538076_30	PF14083	N/A	N/A	N/A	N/A
KOfam	UHGV-1538076_34	K19232	125.5	6.10001e-40	btaE; hyaluronate-binding autotransporter adhesin	N/A
UniRef90	UHGV-1538076_34	UniRef90_UPI001D068F5F	412.0	0	YadA-like family protein	N/A
eggNOG-mapper	UHGV-1538076_34	1128111.HMPREF0870_01786	176.0	0	Hep Hag repeat protein	N/A
Pfam	UHGV-1538076_34	PF05658	N/A	N/A	YadA head domain repeat (2 copies)	YadA_head
Pfam	UHGV-1538076_34	PF05662	N/A	N/A	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
Pfam	UHGV-1538076_34	PF03895	N/A	N/A	YadA-like membrane anchor domain	YadA_anchor
COG	UHGV-1538076_34	COG5295	N/A	N/A	Autotransporter adhesin	N/A
structural_annotation	UHGV-1538076_34	PF03895,NF033478,COG5295	N/A	N/A	N/A	N/A
KOfam	UHGV-1538076_35	K01520	145.4	4.30199e-43	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1538076_35	phrog_135	129.6	1.8e-38	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538076_35	UniRef90_UPI001D08FE4E	277.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1538076_35	192875.XP_004364204.1	115.0	5.08e-31	Deoxyuridine 5-triphosphate nucleotidohydrolase	N/A
Pfam	UHGV-1538076_35	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1538076_35	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1538076_35	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1538076_35	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1538076_36	PF02796,TIGR04381,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_37	phrog_244	78.6	1.1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538076_37	UniRef90_A0A841R0Q1	150.0	5.60519e-45	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1538076_37	1123250.KB908417_gene653	137.0	2.19001e-40	N/A	N/A
structural_annotation	UHGV-1538076_37	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_38	phrog_2776	44.3	0.0000000000023	N/A	unknown function
UniRef90	UHGV-1538076_38	UniRef90_A0A2S7ZCT0	162.0	0	DNA repair protein MmcB-related protein	N/A
structural_annotation	UHGV-1538076_38	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_39	phrog_954	224.6	0	DNA methyltransferase	other
UniRef90	UHGV-1538076_39	UniRef90_A0A496N4S3	293.0	0	Methyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-1538076_39	1401067.HMPREF0872_03435	259.0	0	methyltransferase	N/A
PADLOC	UHGV-1538076_39	MTase_II_00074	210.5	0	Type II methyltransferase	RM
Pfam	UHGV-1538076_39	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1538076_39	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1538076_39	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_40	phrog_1672	49.8	0.000000000000046	N/A	unknown function
UniRef90	UHGV-1538076_40	UniRef90_F5L204	118.0	2.05e-31	Conserved domain protein	N/A
structural_annotation	UHGV-1538076_41	PF16857,MF_00273	N/A	N/A	N/A	N/A
KOfam	UHGV-1538076_42	K03111	145.7	4.90454e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1538076_42	phrog_44	128.0	7.8e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538076_42	UniRef90_UPI000750C286	220.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1538076_42	936589.HMPREF1521_1228	192.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1538076_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1538076_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1538076_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1538076_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1538076_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_45	phrog_9804	67.8	1.6e-19	N/A	unknown function
structural_annotation	UHGV-1538076_45	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_46	phrog_1163	236.0	0	N/A	unknown function
UniRef90	UHGV-1538076_46	UniRef90_UPI001D075DB7	288.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1538076_46	372457.A7DYC7_9CAUD	219.0	0	calcium ion binding	N/A
Pfam	UHGV-1538076_46	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1538076_46	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-1538076_46	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1538076_48	K07451	47.7	0.0000000000003	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1538076_48	phrog_7785	42.3	0.000000000012	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538076_48	UniRef90_UPI001D0937EE	194.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1538076_48	429009.Adeg_0841	50.4	0.00000563	PFAM HNH endonuclease	N/A
Pfam	UHGV-1538076_48	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1538076_48	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1538076_48	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_49	phrog_72	70.1	3.4e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1538076_49	1399942.U3PCT8_9CAUD	104.0	1.25e-25	N/A	N/A
PHROG	UHGV-1538076_50	phrog_7838	114.9	5.5e-34	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538076_50	UniRef90_UPI001D07B780	419.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1538076_50	1485543.JMME01000021_gene803	117.0	1.51e-30	N/A	N/A
Pfam	UHGV-1538076_50	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
structural_annotation	UHGV-1538076_50	PF06420,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_51	phrog_674	85.4	1.9e-25	N/A	unknown function
UniRef90	UHGV-1538076_51	UniRef90_UPI001D090BA8	515.0	0	N/A	N/A
eggNOG-mapper	UHGV-1538076_51	1415775.U729_2587	81.3	0.00000000000000654	N/A	N/A
Pfam	UHGV-1538076_51	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1538076_51	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1538076_52	NF008912	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_53	phrog_7735	80.0	2.6e-23	excisionase	integration and excision
UniRef90	UHGV-1538076_53	UniRef90_UPI001D08B64F	175.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1538076_53	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1538076_53	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_55	phrog_2967	61.8	1.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1538076_55	UniRef90_UPI001D073245	204.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1538076_55	861450.HMPREF0080_02022	142.0	7.7702e-42	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1538076_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1538076_55	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1538076_55	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1538076_57	phrog_20936	109.8	1.2e-32	N/A	unknown function
UniRef90	UHGV-1538076_57	UniRef90_UPI001D078346	169.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1538076_57	861450.HMPREF0080_02020	56.6	0.00000000199	N/A	N/A
Pfam	UHGV-1538076_57	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1538076_57	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1538076_58	K14059	214.7	0	int; integrase	N/A
PHROG	UHGV-1538076_58	phrog_1	191.8	0	integrase	integration and excision
UniRef90	UHGV-1538076_58	UniRef90_UPI001D091886	469.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1538076_58	1232428.CAVO010000003_gene1025	246.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1538076_58	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1538076_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1538076_58	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1538076_58	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A