UHGV-1539278 (vOTU-093056)

Viral Genome: UHGV-1539278

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1539278
vOTU ID	vOTU-093056
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0199814
Associated BioSample	SAMEA2581957
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.96 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.67
Jumbo phage	No

Genome content
Genome length (bp)	27,474
GC content	37.04%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	34
CDS density	96%
Average CDS length (bps)	773.82
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.96)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1539278_1	K01160	62.7	1e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1539278_1	phrog_140	96.3	3.1e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1539278_1	UniRef90_A0A224AZ73	201.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1539278_1	1408415.JHXL01000003_gene1142	197.0	0	crossover junction endodeoxyribonuclease activity	N/A
Pfam	UHGV-1539278_1	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1539278_1	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1539278_1	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_2	phrog_36	78.8	8e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1539278_2	UniRef90_A0A449BET2	103.0	9.69e-26	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-1539278_2	1278311.AUAL01000001_gene42	103.0	1.63e-26	sigma factor activity	N/A
Pfam	UHGV-1539278_2	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1539278_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1539278_2	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1539278_3	K07451	71.7	1.2e-20	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1539278_3	phrog_144	93.0	3.2e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1539278_3	UniRef90_A0A1Q6MCU8	235.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1539278_3	1408415.JHXL01000003_gene1144	229.0	0	endonuclease activity	N/A
Pfam	UHGV-1539278_3	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1539278_3	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1539278_3	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_4	phrog_83	77.5	1.8e-22	terminase small subunit	head and packaging
UniRef90	UHGV-1539278_4	UniRef90_A0A1Q6MDI9	343.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1539278_4	1121334.KB911068_gene2278	261.0	0	N/A	N/A
Pfam	UHGV-1539278_4	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1539278_4	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_5	phrog_1569	112.7	0	N/A	unknown function
UniRef90	UHGV-1539278_5	UniRef90_A0A1V6HCJ2	476.0	0	S-adenosylmethionine synthetase	N/A
eggNOG-mapper	UHGV-1539278_5	665950.HMPREF1025_02641	402.0	0	S-adenosylmethionine synthetase, N-terminal domain	N/A
Pfam	UHGV-1539278_5	PF00438	N/A	N/A	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
COG	UHGV-1539278_5	COG0192	N/A	N/A	S-adenosylmethionine synthetase	N/A
structural_annotation	UHGV-1539278_5	PF01941,MF_00086,TIGR01034,COG0192	N/A	N/A	N/A	N/A
KOfam	UHGV-1539278_6	K07319	121.1	9.3e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1539278_6	phrog_498	509.4	0	DNA methyltransferase	other
UniRef90	UHGV-1539278_6	UniRef90_A0A224B040	753.0	0	DNA modification methylase	N/A
eggNOG-mapper	UHGV-1539278_6	1408415.JHXL01000001_gene382	683.0	0	chromosome segregation	N/A
PADLOC	UHGV-1539278_6	MTase_II_00015	518.2	0	Type II methyltransferase	RM
Pfam	UHGV-1539278_6	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1539278_6	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1539278_6	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1539278_6	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_8	phrog_3782	116.4	5.6e-35	N/A	unknown function
UniRef90	UHGV-1539278_8	UniRef90_UPI001B378DF7	113.0	2.05e-31	N/A	N/A
eggNOG-mapper	UHGV-1539278_8	1408415.JHXL01000001_gene384	113.0	3.26e-32	PFAM AIG2 family protein	N/A
Pfam	UHGV-1539278_8	PF14192	N/A	N/A	N/A	DUF4314
COG	UHGV-1539278_8	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-1539278_8	PF14192,MF_00754,NF003018	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_9	phrog_2443	311.8	0	amidoligase enzyme	other
UniRef90	UHGV-1539278_9	UniRef90_A0A350R3C1	558.0	0	Alpha-L-fucosidase	N/A
eggNOG-mapper	UHGV-1539278_9	1408415.JHXL01000001_gene385	535.0	0	N/A	N/A
AcrCatalog	UHGV-1539278_9	cluster_58247	96.7	6.35e-25	NA	N/A
Pfam	UHGV-1539278_9	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-1539278_9	PF12224	N/A	N/A	N/A	N/A
KOfam	UHGV-1539278_10	K00682	81.0	1.4e-23	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	N/A
PHROG	UHGV-1539278_10	phrog_2520	144.8	2.99878e-43	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1539278_10	UniRef90_A0A1V5HPG8	197.0	0	GGACT domain-containing protein	N/A
eggNOG-mapper	UHGV-1539278_10	1408415.JHXL01000001_gene386	199.0	0	Gamma-glutamyl cyclotransferase, AIG2-like	N/A
Pfam	UHGV-1539278_10	PF06094	N/A	N/A	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
COG	UHGV-1539278_10	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-1539278_10	PF06094,COG2105	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_11	phrog_2945	75.8	3.3e-22	N/A	unknown function
UniRef90	UHGV-1539278_11	UniRef90_D9SLK6	76.6	3.76e-17	(NiFe) hydrogenase maturation protein HypF	N/A
eggNOG-mapper	UHGV-1539278_11	1408415.JHXL01000001_gene387	89.0	7.69e-23	N/A	N/A
PHROG	UHGV-1539278_12	phrog_9	489.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1539278_12	UniRef90_A0A224AZ60	1046.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1539278_12	552396.HMPREF0863_01433	961.0	0	large subunit	N/A
Pfam	UHGV-1539278_12	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1539278_12	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1539278_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1539278_12	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_13	phrog_12	431.3	0	portal protein	head and packaging
UniRef90	UHGV-1539278_13	UniRef90_A0A224AT75	781.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1539278_13	1121334.KB911068_gene2289	709.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1539278_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1539278_13	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1539278_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1539278_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1539278_14	K01358	151.2	8.40779e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1539278_14	phrog_94	252.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1539278_14	UniRef90_A0A1Q6MCX4	355.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1539278_14	1120978.KB894083_gene907	322.0	0	Clp protease	N/A
Pfam	UHGV-1539278_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1539278_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1539278_14	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_15	phrog_10	359.8	0	major head protein	head and packaging
UniRef90	UHGV-1539278_15	UniRef90_A0A1Q6MD06	608.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1539278_15	397288.C806_00801	558.0	0	Phage capsid family	N/A
Pfam	UHGV-1539278_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1539278_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1539278_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1539278_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_16	phrog_40	58.1	1.3e-16	head-tail adaptor Ad1	connector
UniRef90	UHGV-1539278_16	UniRef90_A0A847CVM4	144.0	1.19951e-42	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1539278_16	1235835.C814_01277	137.0	5.49996e-41	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1539278_16	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-1539278_16	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1539278_16	PF05135,TIGR01560	N/A	N/A	N/A	N/A
UniRef90	UHGV-1539278_17	UniRef90_A0A1Q6MD63	171.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1539278_17	1120978.KB894083_gene903	129.0	2.11e-37	Phage head-tail joining protein	N/A
Pfam	UHGV-1539278_17	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-1539278_17	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1539278_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_18	phrog_5	62.7	8.6e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-1539278_18	UniRef90_B0TCT5	172.0	0	Phage protein, hk97 gp10 family, putative	N/A
eggNOG-mapper	UHGV-1539278_18	498761.HM1_2877	172.0	0	TIGRFAM phage protein, HK97 gp10 family	N/A
Pfam	UHGV-1539278_18	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1539278_18	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1539278_18	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_19	phrog_78	45.8	0.0000000000011	tail terminator	connector
eggNOG-mapper	UHGV-1539278_19	509191.AEDB02000020_gene3253	121.0	3.99e-34	N/A	N/A
structural_annotation	UHGV-1539278_19	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_20	phrog_88	165.6	0	major tail protein	tail
UniRef90	UHGV-1539278_20	UniRef90_A0A1Q6MD86	314.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1539278_20	1216932.CM240_0623	291.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1539278_20	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1539278_20	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1539278_20	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_21	phrog_2115	74.8	1e-21	tail protein	tail
eggNOG-mapper	UHGV-1539278_21	293826.Amet_4021	169.0	0	N/A	N/A
structural_annotation	UHGV-1539278_21	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_22	phrog_58	197.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1539278_22	UniRef90_A0A224AZ51	525.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1539278_22	1408415.JHXL01000001_gene400	428.0	0	phage tail tape measure protein	N/A
COG	UHGV-1539278_22	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1539278_22	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_23	phrog_33	86.7	4.3e-25	distal tail protein Dit	tail
UniRef90	UHGV-1539278_23	UniRef90_A0A224AT67	296.0	0	Phage tail component	N/A
eggNOG-mapper	UHGV-1539278_23	1160721.RBI_I01575	181.0	0	Phage tail protein	N/A
Pfam	UHGV-1539278_23	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-1539278_23	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1539278_23	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_24	phrog_1067	416.2	0	minor head protein	head and packaging
UniRef90	UHGV-1539278_24	UniRef90_UPI001F477F79	745.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1539278_24	1160721.RBI_I01574	399.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1539278_24	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-1539278_24	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1539278_24	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1539278_24	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1539278_24	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1539278_25	phrog_3267	333.0	0	tail protein	tail
UniRef90	UHGV-1539278_25	UniRef90_R9C033	418.0	0	YkqB	N/A
eggNOG-mapper	UHGV-1539278_25	207656.S6BUV4_9CAUD	313.0	0	N/A	N/A
structural_annotation	UHGV-1539278_25	PF02010,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
KOfam	UHGV-1539278_26	K24213	82.2	3e-24	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1539278_26	phrog_5073	116.2	3.4e-34	tail fiber protein	tail
Pfam	UHGV-1539278_26	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
UniRef90	UHGV-1539278_28	UniRef90_A0A1Q6MD24	133.0	7.13e-39	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-1539278_28	742740.HMPREF9474_03521	115.0	1.27e-32	N/A	N/A
PHROG	UHGV-1539278_29	phrog_13712	99.1	4.5e-29	holin	lysis
eggNOG-mapper	UHGV-1539278_29	525254.HMPREF0072_1272	77.0	2.41e-16	N/A	N/A
PHROG	UHGV-1539278_31	phrog_2308	54.2	3.3e-16	N/A	unknown function
UniRef90	UHGV-1539278_31	UniRef90_A0A3C0QNF3	75.1	0.00000000000000133	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-1539278_31	1111121.HMPREF1247_1248	71.2	0.0000000000000069	COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
COG	UHGV-1539278_31	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
Pfam	UHGV-1539278_32	PF20612	N/A	N/A	SHOCT domain	SHOCT_2
KOfam	UHGV-1539278_33	K06400	320.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1539278_33	phrog_95	377.1	0	integrase	integration and excision
UniRef90	UHGV-1539278_33	UniRef90_A0A3D0W0R2	533.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1539278_33	1278311.AUAL01000001_gene8	426.0	0	Recombinase	N/A
Pfam	UHGV-1539278_33	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1539278_33	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1539278_33	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1539278_33	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1539278_33	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1539278_34	K06400	349.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1539278_34	phrog_95	406.3	0	integrase	integration and excision
UniRef90	UHGV-1539278_34	UniRef90_A0A3D0W0Q9	619.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1539278_34	1278311.AUAL01000001_gene7	525.0	0	Recombinase	N/A
Pfam	UHGV-1539278_34	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1539278_34	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1539278_34	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1539278_34	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1539278_34	PF00239,PF07508,PF18822,NF041201,COG1961	N/A	N/A	N/A	N/A