UHGV-1540348 (vOTU-017241)

Viral Genome: UHGV-1540348

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1540348
vOTU ID	vOTU-017241
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0214500
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.5 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9754
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.25
Jumbo phage	No

Genome content
Genome length (bp)	29,273
GC content	38.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	92%
Average CDS length (bps)	509.66
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1540348_1	936375.HMPREF1152_0972	73.2	0.00000000000000757	Belongs to the UPF0597 family	N/A
COG	UHGV-1540348_1	COG3681	N/A	N/A	L-cysteine desulfidase YhaM	N/A
KOfam	UHGV-1540348_2	K14059	241.0	0	int; integrase	N/A
PHROG	UHGV-1540348_2	phrog_1	212.7	0	integrase	integration and excision
UniRef90	UHGV-1540348_2	UniRef90_A0A847CB94	403.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1540348_2	908340.HMPREF9406_3938	165.0	7.00649e-45	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1540348_2	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1540348_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1540348_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1540348_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_3	phrog_2158	246.3	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1540348_3	UniRef90_A0A3E4GMG8	300.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-1540348_3	397288.C806_00111	269.0	0	Abi-like protein	N/A
PADLOC	UHGV-1540348_3	AbiD	225.7	0	AbiD	Abi
Pfam	UHGV-1540348_3	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-1540348_3	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-1540348_3	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-1540348_4	K01356	124.2	1.5e-36	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1540348_4	phrog_4	118.6	6.6e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-1540348_4	UniRef90_A0A2S0L5R2	406.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1540348_4	936375.HMPREF1152_0654	239.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1540348_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1540348_4	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1540348_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1540348_4	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1540348_5	K07729	52.6	0.0000000000000095	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1540348_5	phrog_8	48.5	0.00000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540348_5	UniRef90_A0A2S0L5M3	121.0	4.1e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1540348_5	1235794.C811_02109	49.7	0.0000025	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1540348_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1540348_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1540348_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_11	phrog_585	90.7	1.5e-26	N/A	unknown function
UniRef90	UHGV-1540348_11	UniRef90_UPI000C75D571	99.0	3.22e-24	N/A	N/A
eggNOG-mapper	UHGV-1540348_11	411465.PEPMIC_00712	87.8	1.23e-20	N/A	N/A
Pfam	UHGV-1540348_11	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1540348_11	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540348_12	PF11372	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_19	phrog_7566	75.0	6.5e-22	N/A	unknown function
PHROG	UHGV-1540348_21	phrog_7445	43.2	0.0000000000058	N/A	unknown function
Pfam	UHGV-1540348_21	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-1540348_21	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_22	phrog_8470	238.9	0	N/A	unknown function
UniRef90	UHGV-1540348_22	UniRef90_J6H8Z2	506.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1540348_22	936375.HMPREF1152_0668	506.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1540348_22	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1540348_22	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_23	phrog_15609	161.8	0	N/A	unknown function
UniRef90	UHGV-1540348_23	UniRef90_J4W6X5	352.0	0	PF11300 family protein	N/A
eggNOG-mapper	UHGV-1540348_23	936375.HMPREF1152_0669	352.0	0	N/A	N/A
Pfam	UHGV-1540348_23	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-1540348_23	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-1540348_23	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_26	phrog_2245	65.9	5.3e-19	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1540348_26	UniRef90_A0A2S0L5I7	140.0	2.17005e-41	MazG domain-containing protein	N/A
Pfam	UHGV-1540348_26	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
KOfam	UHGV-1540348_27	K03111	149.9	2.24208e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1540348_27	phrog_44	140.4	1.10002e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540348_27	UniRef90_A0A2S0L5J3	254.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1540348_27	936375.HMPREF1152_1764	190.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1540348_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1540348_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1540348_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1540348_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1540348_27	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_29	phrog_3584	173.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540348_29	UniRef90_A0A1I5LZL1	141.0	5.47e-37	Relaxase/Mobilisation nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1540348_29	936375.HMPREF1152_0670	328.0	0	N/A	N/A
structural_annotation	UHGV-1540348_29	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_30	phrog_36	66.5	5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540348_30	UniRef90_J5WFY5	140.0	3.37e-40	PF07374 family protein	N/A
eggNOG-mapper	UHGV-1540348_30	879310.HMPREF9162_0063	65.1	0.0000000000215	sigma factor activity	N/A
COG	UHGV-1540348_30	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1540348_30	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1540348_31	K07474	76.0	9.9e-22	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1540348_31	phrog_2606	126.8	1.5e-37	terminase small subunit	head and packaging
UniRef90	UHGV-1540348_31	UniRef90_A0A2S0L5K1	550.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1540348_31	936375.HMPREF1152_0672	389.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-1540348_31	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-1540348_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-1540348_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1540348_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1540348_32	phrog_104	278.2	0	portal protein	head and packaging
UniRef90	UHGV-1540348_32	UniRef90_J6HG04	700.0	0	SPP1 Gp6-like phage portal protein	N/A
eggNOG-mapper	UHGV-1540348_32	936375.HMPREF1152_0673	700.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1540348_32	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1540348_32	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_33	phrog_2494	62.2	8.5e-18	minor head protein	head and packaging
UniRef90	UHGV-1540348_33	UniRef90_A0A139QI05	58.2	0.000000254	N/A	N/A
eggNOG-mapper	UHGV-1540348_33	665950.HMPREF1025_02536	70.9	0.00000000000144	N/A	N/A
PHROG	UHGV-1540348_34	phrog_2494	111.2	9.8e-33	minor head protein	head and packaging
UniRef90	UHGV-1540348_34	UniRef90_J5WFW3	403.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1540348_34	936375.HMPREF1152_0675	403.0	0	N/A	N/A
Pfam	UHGV-1540348_34	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
structural_annotation	UHGV-1540348_34	PF18451,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_35	phrog_17688	328.2	0	N/A	unknown function
UniRef90	UHGV-1540348_35	UniRef90_A0A2S0L5I4	937.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1540348_35	936375.HMPREF1152_0677	775.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-1540348_35	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1540348_35	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1540348_35	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_36	phrog_233	99.2	5.1e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1540348_36	UniRef90_A0A2S0L5H5	291.0	0	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1540348_36	936375.HMPREF1152_0678	223.0	0	N/A	N/A
Pfam	UHGV-1540348_36	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1540348_36	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_37	phrog_32396	134.9	2.1e-40	N/A	unknown function
UniRef90	UHGV-1540348_37	UniRef90_A0A2S0L5I3	575.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1540348_37	936375.HMPREF1152_0679	514.0	0	Phage capsid family	N/A
Pfam	UHGV-1540348_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-1540348_37	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_39	phrog_137	95.0	5.4e-28	head-tail adaptor Ad1	connector
UniRef90	UHGV-1540348_39	UniRef90_J5WG12	194.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1540348_39	936375.HMPREF1152_0681	194.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1540348_39	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1540348_39	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_40	phrog_501	86.2	3.2e-25	head closure Hc1	connector
UniRef90	UHGV-1540348_40	UniRef90_A0A0E3WFP3	137.0	7.76e-40	N/A	N/A
eggNOG-mapper	UHGV-1540348_40	936375.HMPREF1152_0682	190.0	0	N/A	N/A
structural_annotation	UHGV-1540348_40	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_41	phrog_387	96.9	1.1e-28	neck protein	connector
UniRef90	UHGV-1540348_41	UniRef90_A0A139NAV7	94.0	1.22e-23	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1540348_41	936375.HMPREF1152_0683	141.0	3.44719e-43	N/A	N/A
PHROG	UHGV-1540348_42	phrog_123	74.4	1.6e-21	tail terminator	connector
eggNOG-mapper	UHGV-1540348_42	936375.HMPREF1152_0684	109.0	1.13e-29	N/A	N/A
structural_annotation	UHGV-1540348_42	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_43	phrog_117	170.2	0	major tail protein	tail
UniRef90	UHGV-1540348_43	UniRef90_A0A2S0L5R7	361.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1540348_43	936375.HMPREF1152_0685	320.0	0	domain, Protein	N/A
COG	UHGV-1540348_43	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540348_43	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_44	phrog_1526	79.1	4.1e-23	N/A	unknown function
UniRef90	UHGV-1540348_44	UniRef90_F3MWB0	79.3	1.46e-17	N/A	N/A
eggNOG-mapper	UHGV-1540348_44	936375.HMPREF1152_0686	136.0	6.26002e-41	N/A	N/A
PHROG	UHGV-1540348_45	phrog_1633	60.4	3.2e-17	N/A	unknown function
UniRef90	UHGV-1540348_45	UniRef90_UPI001CD757D3	62.0	0.0000000000768	N/A	N/A
eggNOG-mapper	UHGV-1540348_45	936375.HMPREF1152_0687	87.8	1.5e-21	N/A	N/A
Pfam	UHGV-1540348_45	PF17318	N/A	N/A	N/A	DUF5361
PHROG	UHGV-1540348_46	phrog_6900	227.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1540348_46	UniRef90_A0A4D5ZXV4	149.0	3.76e-34	Putative tail protein	N/A
eggNOG-mapper	UHGV-1540348_46	936375.HMPREF1152_0688	791.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1540348_46	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540348_46	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_47	phrog_33	59.2	8.4e-17	distal tail protein Dit	tail
UniRef90	UHGV-1540348_47	UniRef90_J5WFT7	444.0	0	Phage tail domain protein	N/A
structural_annotation	UHGV-1540348_47	PF16774,PF21766,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_48	phrog_538	42.5	9.7e-20	minor tail protein	tail
Pfam	UHGV-1540348_48	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1540348_48	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_49	phrog_1220	134.4	2.09999e-41	head protein	head and packaging
eggNOG-mapper	UHGV-1540348_49	936375.HMPREF1152_0017	381.0	0	N/A	N/A
structural_annotation	UHGV-1540348_49	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-1540348_52	phrog_1863	57.9	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-1540348_52	748224.HMPREF9436_01412	64.3	0.000000000001	N/A	N/A
PHROG	UHGV-1540348_53	phrog_1129	74.4	8.6e-22	holin	lysis
UniRef90	UHGV-1540348_53	UniRef90_A0A2S0L5I2	222.0	0	Holin	N/A
eggNOG-mapper	UHGV-1540348_53	33035.JPJF01000043_gene995	73.2	0.00000000000000196	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1540348_53	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1540348_53	PF06946	N/A	N/A	N/A	N/A