UHGV-1540516 (vOTU-019008)

Viral Genome: UHGV-1540516

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1540516
vOTU ID	vOTU-019008
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0349811
Associated BioSample	SAMN05414933
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.49 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.01
Jumbo phage	No

Genome content
Genome length (bp)	55,172
GC content	52.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	93%
Average CDS length (bps)	766.16
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1540516_2	K07273	148.7	4.62428e-44	acm; lysozyme	N/A
PHROG	UHGV-1540516_2	phrog_6745	117.2	1.3e-34	endolysin	lysis
UniRef90	UHGV-1540516_2	UniRef90_UPI000B06DDC9	258.0	0	glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1540516_2	1392502.JNIO01000008_gene2174	257.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1540516_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1540516_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1540516_2	PF01183,NF008377,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_3	phrog_28789	141.0	2.49992e-42	N/A	unknown function
UniRef90	UHGV-1540516_3	UniRef90_R7MZN4	125.0	4.83e-35	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1540516_3	1273103.NM10_00934	142.0	1.62971e-42	N/A	N/A
PHROG	UHGV-1540516_5	phrog_9854	319.6	0	N/A	unknown function
UniRef90	UHGV-1540516_5	UniRef90_A0A414NWG4	4417.0	0	UDP-N-acetylglucosamine kinase	N/A
eggNOG-mapper	UHGV-1540516_5	1123288.SOV_4c02780	567.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-1540516_5	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-1540516_5	PF18763	N/A	N/A	ddrB-like ParB superfamily domain	ddrB-ParB
Pfam	UHGV-1540516_5	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1540516_5	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1540516_5	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
UniRef90	UHGV-1540516_8	UniRef90_A0A414NWI0	545.0	0	Hom_end_hint domain-containing protein	N/A
eggNOG-mapper	UHGV-1540516_8	1485543.JMME01000020_gene776	450.0	0	N/A	N/A
Pfam	UHGV-1540516_8	PF05203	N/A	N/A	Hom_end-associated Hint	Hom_end_hint
NCBIFam	UHGV-1540516_8	TIGR01443.1	N/A	N/A	intein C-terminal splicing region	N/A
structural_annotation	UHGV-1540516_8	PF07591,NF038136,TIGR03017,COG4942	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540516_9	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1540516_10	1401067.HMPREF0872_03755	214.0	0	N/A	N/A
structural_annotation	UHGV-1540516_10	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540516_11	PF05899,MF_01537,NF007875,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_14	phrog_6465	106.5	3.5e-31	tail protein	tail
eggNOG-mapper	UHGV-1540516_14	500635.MITSMUL_03163	144.0	8.37e-35	Membrane	N/A
COG	UHGV-1540516_14	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1540516_14	COG4675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1540516_15	1150626.PHAMO_80093	111.0	1.2e-23	extracellular polysaccharide biosynthetic process	N/A
COG	UHGV-1540516_15	COG3206	N/A	N/A	Exopolysaccharide export protein/domain GumC/Wzc1	N/A
structural_annotation	UHGV-1540516_15	PF05660,NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_16	phrog_5417	80.5	1.7e-23	N/A	unknown function
UniRef90	UHGV-1540516_16	UniRef90_H8FY63	165.0	0	Putative BcepGomrgp18	N/A
eggNOG-mapper	UHGV-1540516_16	1589747.A0A0B5A4F6_9CAUD	53.9	0.000000514	N/A	N/A
structural_annotation	UHGV-1540516_16	PF12571	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1540516_17	1232428.CAVO010000067_gene421	431.0	0	cellulase activity	N/A
COG	UHGV-1540516_17	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-1540516_17	PF18001,PF01828,PF16389,MF_01905,NF010681,COG3401,COG3506	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1540516_18	1485543.JMME01000020_gene785	211.0	0	N/A	N/A
structural_annotation	UHGV-1540516_18	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540516_19	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_21	phrog_1328	181.8	0	major head protein	head and packaging
UniRef90	UHGV-1540516_21	UniRef90_UPI0004838F8E	525.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540516_21	1485543.JMME01000020_gene788	525.0	0	N/A	N/A
Pfam	UHGV-1540516_21	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-1540516_21	PF17236,MF_04133,NF033394,COG4834	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1540516_22	1485543.JMME01000020_gene789	152.0	5.72e-40	N/A	N/A
PHROG	UHGV-1540516_24	phrog_1216	289.7	0	portal protein	head and packaging
UniRef90	UHGV-1540516_24	UniRef90_A0A0U1L376	540.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1540516_24	1485543.JMME01000020_gene791	954.0	0	Membrane	N/A
COG	UHGV-1540516_24	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1540516_24	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_25	phrog_5902	246.6	0	N/A	unknown function
UniRef90	UHGV-1540516_25	UniRef90_A0A414NWF6	810.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1540516_25	1485543.JMME01000020_gene792	699.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-1540516_25	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1540516_25	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_26	phrog_309	194.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-1540516_26	UniRef90_A0A414NWE7	264.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1540516_26	411468.CLOSCI_00294	188.0	0	transposase activity	N/A
COG	UHGV-1540516_26	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1540516_26	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_27	phrog_419	83.4	2.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1540516_27	203119.Cthe_2457	101.0	1.06e-27	N/A	N/A
structural_annotation	UHGV-1540516_27	PF14083	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1540516_29	401526.TcarDRAFT_1279	75.1	0.0000000000000114	phage transcriptional regulator, RinA family	N/A
PHROG	UHGV-1540516_31	phrog_8238	139.8	1.29998e-41	RNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540516_31	UniRef90_UPI001CD287D6	109.0	7.06e-26	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1540516_31	1329516.JPST01000013_gene230	113.0	1.26e-26	AAA domain	N/A
Pfam	UHGV-1540516_31	PF13671	N/A	N/A	AAA domain	AAA_33
COG	UHGV-1540516_31	COG0639	N/A	N/A	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	N/A
structural_annotation	UHGV-1540516_31	PF13671,MF_00065,TIGR03574,COG4088	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_35	phrog_1271	56.6	6e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1540516_35	PF09889	N/A	N/A	N/A	DUF2116
structural_annotation	UHGV-1540516_35	PF10013,COG4338	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_36	phrog_4897	115.0	7.5e-34	kinase	other
UniRef90	UHGV-1540516_36	UniRef90_A0A414NWR2	138.0	2.58e-39	N/A	N/A
eggNOG-mapper	UHGV-1540516_36	546273.VEIDISOL_00707	79.7	1.46e-16	N/A	N/A
Pfam	UHGV-1540516_36	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1540516_37	PF13051,PF06892,MF_00948,NF000331,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-1540516_38	K01160	54.0	0.0000000000000045	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1540516_38	phrog_140	133.9	7.1e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540516_38	UniRef90_A0A414NWU9	268.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1540516_38	936573.HMPREF1147_1316	141.0	3.00999e-41	crossover junction endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1540516_38	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1540516_38	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1540516_38	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_40	phrog_2340	98.5	3.9e-29	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540516_40	UniRef90_A0A5Q2W3H9	104.0	1.23e-25	Putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1540516_40	10761.Q716E9_BPSFV	80.9	4.57e-17	N/A	N/A
KOfam	UHGV-1540516_41	K03111	151.3	8.40779e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1540516_41	phrog_44	154.4	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540516_41	UniRef90_A0A414NWF1	197.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1540516_41	546271.Selsp_1347	144.0	7.79122e-43	Single-strand binding protein family	N/A
Pfam	UHGV-1540516_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1540516_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1540516_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1540516_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1540516_41	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540516_43	PF08861,COG5440	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540516_44	PF08861,COG5440	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_45	phrog_15946	61.2	2.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1540516_45	1041147.AUFB01000014_gene330	63.5	0.0000000000795	N/A	N/A
PHROG	UHGV-1540516_46	phrog_4652	110.0	1.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-1540516_46	397290.C810_01459	280.0	0	N/A	N/A
structural_annotation	UHGV-1540516_46	TIGR02582	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_49	phrog_9804	77.0	2.7e-22	N/A	unknown function
UniRef90	UHGV-1540516_49	UniRef90_A0A1C5TFI8	70.9	0.00000000000894	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1540516_49	1280706.AUJE01000046_gene1152	129.0	4.39e-35	N/A	N/A
structural_annotation	UHGV-1540516_49	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_50	phrog_11233	99.0	5.1e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540516_50	UniRef90_A0A554J835	85.9	3.31e-16	Bacteriophage-like protein	N/A
eggNOG-mapper	UHGV-1540516_50	755731.Clo1100_1616	61.6	0.0000000287	Phage replisome organizer	N/A
COG	UHGV-1540516_50	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1540516_50	PF13463,NF040642,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_51	phrog_398	181.5	0	N/A	unknown function
UniRef90	UHGV-1540516_51	UniRef90_A0A414NWE1	414.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540516_51	1485543.JMME01000021_gene802	275.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1540516_51	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1540516_51	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_52	phrog_155	153.3	1.4013e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540516_52	UniRef90_UPI0009F184EE	229.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1540516_52	413066.A1EAD0_9CAUD	171.0	0	ERF superfamily	N/A
Pfam	UHGV-1540516_52	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1540516_52	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_53	phrog_253	99.4	3.6e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540516_53	UniRef90_A7B3R2	125.0	9.48e-34	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1540516_53	411470.RUMGNA_02192	125.0	1.59e-34	Siphovirus Gp157	N/A
Pfam	UHGV-1540516_53	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1540516_53	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-1540516_57	UniRef90_A0A414NWC8	133.0	8.14e-39	DNA-binding protein	N/A
Pfam	UHGV-1540516_57	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1540516_57	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-1540516_57	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
PHROG	UHGV-1540516_60	phrog_130	177.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1540516_60	UniRef90_A0A1R7MSK0	191.0	0	Toxin Bro	N/A
eggNOG-mapper	UHGV-1540516_60	546271.Selsp_1341	178.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1540516_60	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1540516_60	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1540516_60	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-1540516_61	K07729	46.3	0.00000000000082	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1540516_61	phrog_3	45.3	0.0000000000033	transcriptional repressor	transcription regulation
UniRef90	UHGV-1540516_61	UniRef90_D1YMA5	77.4	2.2e-17	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1540516_61	1401067.HMPREF0872_06900	71.2	0.00000000000000101	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1540516_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1540516_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1540516_61	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1540516_62	K22300	45.8	0.0000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1540516_62	phrog_8	60.0	5.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540516_62	UniRef90_A0A5D6WD79	122.0	7.81e-33	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1540516_62	864563.HMPREF9166_0600	94.4	7.55e-22	sequence-specific DNA binding	N/A
Pfam	UHGV-1540516_62	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1540516_62	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1540516_62	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1540516_63	phrog_87	66.4	3e-19	metallo-protease	other
UniRef90	UHGV-1540516_63	UniRef90_A0A5D6WAM0	164.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1540516_63	1123250.KB908434_gene7	125.0	2.59e-35	Zn peptidase	N/A
Pfam	UHGV-1540516_63	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1540516_63	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1540516_63	PF06114,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1540516_64	386456.JQKN01000001_gene2248	66.6	0.00000000000215	PFAM nucleic acid binding, OB-fold, tRNA helicase-type	N/A
Pfam	UHGV-1540516_64	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-1540516_64	COG4085	N/A	N/A	DNA/RNA endonuclease YhcR, contains UshA esterase domain	N/A
KOfam	UHGV-1540516_67	K07496	382.4	0	K07496; putative transposase	N/A
PHROG	UHGV-1540516_67	phrog_506	387.4	0	transposase	integration and excision
UniRef90	UHGV-1540516_67	UniRef90_D2RKC6	736.0	0	Transposase, IS605 OrfB family	N/A
eggNOG-mapper	UHGV-1540516_67	591001.Acfer_1166	736.0	0	COG0675 Transposase and inactivated derivatives	N/A
PADLOC	UHGV-1540516_67	V_U4	213.0	0	CAS-V-F; effector__SPE	CRISPR-CAS
Pfam	UHGV-1540516_67	PF12323	N/A	N/A	Helix-turn-helix domain	HTH_OrfB_IS605
Pfam	UHGV-1540516_67	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-1540516_67	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-1540516_67	NF040570.1	N/A	N/A	RNA-guided endonuclease TnpB family protein	N/A
COG	UHGV-1540516_67	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-1540516_67	PF07282,PF01385,NF038281,COG0675	N/A	N/A	N/A	N/A