UHGV-1540635 (vOTU-151461)

Viral Genome: UHGV-1540635

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1540635
vOTU ID	vOTU-151461
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0222443
Associated BioSample	SAMEA2738141
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.07 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9827
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.77
Jumbo phage	No

Genome content
Genome length (bp)	25,108
GC content	40.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	95%
Average CDS length (bps)	664.08
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1540635_1	phrog_10091	88.9	5e-26	holin	lysis
UniRef90	UHGV-1540635_1	UniRef90_Q708K1	167.0	0	Holin	N/A
eggNOG-mapper	UHGV-1540635_1	428127.EUBDOL_01206	107.0	2.83e-29	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1540635_1	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1540635_1	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1540635_1	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540635_1	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_2	phrog_4257	123.8	9.4e-37	N/A	unknown function
UniRef90	UHGV-1540635_2	UniRef90_F9PZ52	105.0	2.29e-26	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1540635_2	997830.HMPREF1124_0612	108.0	3.38e-28	N/A	N/A
PHROG	UHGV-1540635_3	phrog_1554	250.0	0	N/A	unknown function
UniRef90	UHGV-1540635_3	UniRef90_A0A139Q9H9	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540635_3	1035189.HMPREF9954_1920	220.0	0	N/A	N/A
structural_annotation	UHGV-1540635_3	PF07104	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_4	phrog_12683	108.2	3.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-1540635_4	1095737.HMPREF1110_1748	48.1	0.00000157	N/A	N/A
PHROG	UHGV-1540635_5	phrog_1210	690.1	0	PblB-type receptor binding	other
UniRef90	UHGV-1540635_5	UniRef90_A0A1X1L0Z3	2625.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1540635_5	1566990.A0A0A0YV37_9CAUD	1422.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1540635_5	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-1540635_5	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1540635_5	PF14594,PF00629,PF10528,TIGR01665,NF033675,NF038393,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_6	phrog_33	51.6	0.000000000000021	distal tail protein Dit	tail
UniRef90	UHGV-1540635_6	UniRef90_UPI001EFF5C66	331.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1540635_6	1123314.AUIO01000016_gene850	335.0	0	N/A	N/A
structural_annotation	UHGV-1540635_6	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1540635_7	K10421	46.0	0.00000000000031	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1540635_7	phrog_17020	301.1	0	N/A	unknown function
UniRef90	UHGV-1540635_7	UniRef90_A0A081QD07	1086.0	0	Chromosome partition protein Smc	N/A
eggNOG-mapper	UHGV-1540635_7	888049.HMPREF8578_0706	862.0	0	Phage tail tape measure protein	N/A
COG	UHGV-1540635_7	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-1540635_7	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_8	phrog_709	123.9	7.4e-37	N/A	unknown function
UniRef90	UHGV-1540635_8	UniRef90_A0A0E4CSV4	175.0	0	Prophage pi2 protein 40	N/A
eggNOG-mapper	UHGV-1540635_8	1035184.HMPREF1042_1216	176.0	0	N/A	N/A
structural_annotation	UHGV-1540635_8	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_9	phrog_88	152.4	1.4013e-45	major tail protein	tail
UniRef90	UHGV-1540635_9	UniRef90_A0A7G1ITF4	374.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1540635_9	1123314.AUIO01000016_gene846	304.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1540635_9	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1540635_9	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_10	phrog_78	40.1	0.000000000068	tail terminator	connector
UniRef90	UHGV-1540635_10	UniRef90_T0U477	125.0	2.1e-35	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-1540635_10	644007.C5J968_9CAUD	134.0	1.11e-39	aminopeptidase activity	N/A
structural_annotation	UHGV-1540635_10	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_11	phrog_5	42.5	0.000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-1540635_11	UniRef90_UPI00195EB731	137.0	9.53001e-40	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1540635_11	1123314.AUIO01000016_gene844	146.0	4.62428e-44	N/A	N/A
Pfam	UHGV-1540635_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1540635_11	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_12	phrog_1951	112.7	1.5e-33	head-tail adaptor	connector
UniRef90	UHGV-1540635_12	UniRef90_UPI001956060B	158.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-1540635_12	1005705.HMPREF9967_1045	142.0	5.91348e-43	head-tail adaptor	N/A
NCBIFam	UHGV-1540635_12	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1540635_12	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1540635_12	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_13	phrog_2550	126.1	6.5e-38	N/A	unknown function
UniRef90	UHGV-1540635_13	UniRef90_A0A0T8BHT1	129.0	1.59e-37	N/A	N/A
eggNOG-mapper	UHGV-1540635_13	644007.C5J965_9CAUD	127.0	3.11e-37	Phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-1540635_13	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_14	phrog_3673	72.0	5.5e-21	Arc-like repressor	transcription regulation
UniRef90	UHGV-1540635_14	UniRef90_A0A098ANL2	82.8	4.28e-19	N/A	N/A
PHROG	UHGV-1540635_15	phrog_10	185.2	0	major head protein	head and packaging
UniRef90	UHGV-1540635_15	UniRef90_A0A4J2AVD2	603.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1540635_15	1316408.HSISM1_1054	352.0	0	capsid protein	N/A
Pfam	UHGV-1540635_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1540635_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1540635_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1540635_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1540635_16	K06904	133.9	1.6e-39	N/A	N/A
PHROG	UHGV-1540635_16	phrog_80	169.2	0	head maturation protease	head and packaging
UniRef90	UHGV-1540635_16	UniRef90_A0A098ANM2	363.0	0	Bacteriophage maturation protease	N/A
eggNOG-mapper	UHGV-1540635_16	1005705.HMPREF9967_1041	340.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1540635_16	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1540635_16	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1540635_16	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1540635_16	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_17	phrog_12	189.8	0	portal protein	head and packaging
UniRef90	UHGV-1540635_17	UniRef90_A0A7G1IQG3	761.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1540635_17	1123314.AUIO01000016_gene838	620.0	0	Phage portal protein	N/A
Pfam	UHGV-1540635_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1540635_17	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1540635_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1540635_17	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_18	phrog_9	340.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1540635_18	UniRef90_A0A7G1IQ86	1136.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1540635_18	644007.C5J959_9CAUD	1084.0	0	Phage Terminase	N/A
Pfam	UHGV-1540635_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1540635_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-1540635_18	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_19	phrog_361	152.2	1.4013e-45	terminase small subunit	head and packaging
UniRef90	UHGV-1540635_19	UniRef90_A0A414CIM9	222.0	0	POU-specific domain-containing protein	N/A
eggNOG-mapper	UHGV-1540635_19	1005705.HMPREF9967_1038	247.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1540635_19	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1540635_19	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1540635_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_20	phrog_119	66.7	3.7e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540635_20	UniRef90_W1US92	216.0	0	Prophage LambdaBa02, HNH endonuclease family protein	N/A
eggNOG-mapper	UHGV-1540635_20	888049.HMPREF8578_0692	189.0	0	endonuclease activity	N/A
COG	UHGV-1540635_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1540635_21	phrog_98	75.5	6.1e-22	N/A	unknown function
UniRef90	UHGV-1540635_21	UniRef90_A0A0P0N5Y9	203.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1540635_21	1225805.J7KIZ4_9CAUD	50.8	0.0000052	YopX protein	N/A
Pfam	UHGV-1540635_21	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1540635_21	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1540635_21	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1540635_22	K04763	103.5	2.7e-30	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1540635_22	phrog_216	187.3	0	integrase	integration and excision
UniRef90	UHGV-1540635_22	UniRef90_A0A4D6B299	352.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-1540635_22	644007.C5J955_9CAUD	353.0	0	Phage integrase family	N/A
Pfam	UHGV-1540635_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
structural_annotation	UHGV-1540635_22	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_23	phrog_36	78.1	1.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540635_23	UniRef90_E6KKC4	249.0	0	Phage transcriptional regulator, RinA family	N/A
eggNOG-mapper	UHGV-1540635_23	1123315.AUIP01000003_gene229	87.4	3.05e-20	Transcriptional regulator, RinA family	N/A
NCBIFam	UHGV-1540635_23	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-1540635_23	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_24	phrog_8	63.1	5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540635_24	UniRef90_A0A0T8BUK0	226.0	0	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-1540635_24	405948.SACE_5483	55.1	0.000000843	domain, Protein	N/A
Pfam	UHGV-1540635_24	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-1540635_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1540635_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1540635_24	PF01381,PF13560,MF_00535,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_25	phrog_803	58.2	1.6e-16	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1540635_25	UniRef90_A0A0T8TGR8	112.0	2.34e-31	N/A	N/A
PHROG	UHGV-1540635_26	phrog_236	105.9	7e-31	nucleotide kinase	other
UniRef90	UHGV-1540635_26	UniRef90_A0A0U0KTY0	149.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1540635_26	768726.HMPREF9178_1073	143.0	3.64338e-44	N/A	N/A
Pfam	UHGV-1540635_26	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-1540635_27	phrog_323	97.9	1.5e-29	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540635_27	UniRef90_Q708P1	335.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1540635_27	12402.Q708P1_9CAUD	335.0	0	N/A	N/A
Pfam	UHGV-1540635_27	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
Pfam	UHGV-1540635_27	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
dbAPIS	UHGV-1540635_27	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
PHROG	UHGV-1540635_28	phrog_12243	52.6	0.000000000000007	N/A	unknown function
PHROG	UHGV-1540635_29	phrog_98	97.7	9.8e-29	N/A	unknown function
UniRef90	UHGV-1540635_29	UniRef90_A0A1X1L0U4	261.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1540635_29	663952.SDD27957_09240	94.7	2.44e-23	YopX protein	N/A
Pfam	UHGV-1540635_29	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1540635_29	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1540635_29	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_30	phrog_1992	167.9	0	MazG-like pyrophosphatase	other
UniRef90	UHGV-1540635_30	UniRef90_A0A1X1L197	321.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1540635_30	1035189.HMPREF9954_1947	232.0	0	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-1540635_30	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1540635_30	PF08761,COG4508	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_31	phrog_884	114.3	4.7e-34	N/A	unknown function
UniRef90	UHGV-1540635_31	UniRef90_A0A4U9XYI2	169.0	0	Gp27	N/A
eggNOG-mapper	UHGV-1540635_31	365659.smi_0433	163.0	0	N/A	N/A
Pfam	UHGV-1540635_31	PF07116	N/A	N/A	N/A	DUF1372
structural_annotation	UHGV-1540635_31	PF07116,COG3585	N/A	N/A	N/A	N/A
PHROG	UHGV-1540635_32	phrog_4615	81.9	5.1e-24	N/A	unknown function
PHROG	UHGV-1540635_33	phrog_3606	90.6	1.1e-26	N/A	unknown function
PHROG	UHGV-1540635_34	phrog_4019	171.8	0	N/A	unknown function
UniRef90	UHGV-1540635_34	UniRef90_F9PY75	202.0	0	Conserved domain protein	N/A
PHROG	UHGV-1540635_35	phrog_4252	62.4	3.5e-18	N/A	unknown function
UniRef90	UHGV-1540635_35	UniRef90_UPI001BE723C0	91.3	5.08e-22	YopX family protein	N/A
PHROG	UHGV-1540635_36	phrog_121	143.2	1.10002e-42	N/A	unknown function
UniRef90	UHGV-1540635_36	UniRef90_A0A7X1S1L7	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540635_36	1095737.HMPREF1110_1213	145.0	1.12006e-41	N/A	N/A
Pfam	UHGV-1540635_36	PF07852	N/A	N/A	N/A	DUF1642
structural_annotation	UHGV-1540635_36	PF07852	N/A	N/A	N/A	N/A