UHGV-1540713 (vOTU-083914)

Viral Genome: UHGV-1540713

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1540713
vOTU ID	vOTU-083914
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0282425
Associated BioSample	SAMEA3449294
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.78
Jumbo phage	No

Genome content
Genome length (bp)	41,104
GC content	39.58%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	88%
Average CDS length (bps)	590.41
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1540713_1	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_5	phrog_9479	87.1	2.7e-25	N/A	unknown function
UniRef90	UHGV-1540713_6	UniRef90_A0A1Y3RQK6	93.6	5.43e-19	zinc_ribbon_2 domain-containing protein	N/A
PHROG	UHGV-1540713_7	phrog_199	68.3	9.7e-20	holin	lysis
UniRef90	UHGV-1540713_7	UniRef90_W0U6A0	145.0	3.8802e-42	Holin	N/A
eggNOG-mapper	UHGV-1540713_7	1160721.RBI_I01565	145.0	6.51604e-43	Bacteriophage holin family	N/A
Pfam	UHGV-1540713_7	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1540713_7	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1540713_7	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1540713_7	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_8	phrog_21357	73.9	1.6e-21	endolysin	lysis
UniRef90	UHGV-1540713_8	UniRef90_R6UJ33	383.0	0	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-1540713_8	1160721.RBI_II00521	64.3	0.00000000795	hydrolase, family 25	N/A
Pfam	UHGV-1540713_8	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1540713_8	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1540713_8	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1540713_8	PF05382,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_10	phrog_18190	65.1	3.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1540713_10	1235790.C805_00089	57.8	0.00000441	N/A	N/A
structural_annotation	UHGV-1540713_10	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_11	phrog_1194	56.3	5.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-1540713_11	1304866.K413DRAFT_3047	88.2	1.55e-20	N/A	N/A
Pfam	UHGV-1540713_11	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1540713_11	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_12	phrog_1535	458.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1540713_12	UniRef90_A0A2N0ULX3	1222.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1540713_12	742740.HMPREF9474_03514	329.0	0	tape measure	N/A
COG	UHGV-1540713_12	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1540713_12	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_13	phrog_706	127.2	1.2e-37	N/A	unknown function
UniRef90	UHGV-1540713_13	UniRef90_UPI001B3C82AE	262.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1540713_13	1160721.RBI_II00530	203.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1540713_13	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1540713_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_14	phrog_11299	109.1	3.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-1540713_14	1449050.JNLE01000003_gene3883	72.4	0.0000000000000312	N/A	N/A
structural_annotation	UHGV-1540713_14	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_15	phrog_3099	149.8	1.26117e-44	N/A	unknown function
eggNOG-mapper	UHGV-1540713_15	1160721.RBI_II00532	236.0	0	N/A	N/A
structural_annotation	UHGV-1540713_15	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_16	phrog_3266	104.2	8.9e-31	tail completion	connector
eggNOG-mapper	UHGV-1540713_16	1449050.JNLE01000003_gene3885	146.0	3.37713e-43	N/A	N/A
structural_annotation	UHGV-1540713_16	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_17	phrog_556	110.6	7.2e-33	minor head protein	head and packaging
UniRef90	UHGV-1540713_17	UniRef90_UPI001B3C5A2B	181.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1540713_17	1449050.JNLE01000003_gene3886	172.0	0	N/A	N/A
Pfam	UHGV-1540713_17	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1540713_17	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_18	phrog_3366	61.3	6.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-1540713_18	1449050.JNLE01000003_gene3887	89.0	3.54e-21	N/A	N/A
Pfam	UHGV-1540713_18	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1540713_18	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_19	phrog_541	89.4	3.3e-26	head-tail adaptor	connector
UniRef90	UHGV-1540713_19	UniRef90_A0A371AQT0	88.2	3.7e-20	N/A	N/A
eggNOG-mapper	UHGV-1540713_19	1449050.JNLE01000003_gene3888	93.2	6.37e-23	N/A	N/A
Pfam	UHGV-1540713_19	PF20557	N/A	N/A	Putative DnaT-like ssDNA binding protein	DnaT_2
PHROG	UHGV-1540713_20	phrog_422	236.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1540713_20	693746.OBV_18090	380.0	0	N/A	N/A
structural_annotation	UHGV-1540713_20	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_21	phrog_194	99.6	4e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1540713_21	UniRef90_UPI0018995066	322.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1540713_21	742765.HMPREF9457_02126	167.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1540713_21	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1540713_21	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540713_22	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_24	phrog_581	311.7	0	minor head protein	head and packaging
UniRef90	UHGV-1540713_24	UniRef90_UPI001897AC3D	798.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1540713_24	411470.RUMGNA_02213	361.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1540713_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1540713_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540713_24	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_25	phrog_533	325.0	0	portal protein	head and packaging
UniRef90	UHGV-1540713_25	UniRef90_UPI00189C53D6	813.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1540713_25	1304866.K413DRAFT_3035	464.0	0	N/A	N/A
structural_annotation	UHGV-1540713_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1540713_26	K06909	78.7	8.1e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1540713_26	phrog_2	87.3	2.7e-25	terminase large subunit	head and packaging
UniRef90	UHGV-1540713_26	UniRef90_UPI00189AB5B3	852.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1540713_26	1304866.K413DRAFT_3034	602.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1540713_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1540713_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1540713_26	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_27	phrog_309	136.2	9.49996e-41	terminase small subunit	head and packaging
UniRef90	UHGV-1540713_27	UniRef90_UPI001B3C9B19	219.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1540713_27	693746.OBV_18020	133.0	6.78e-38	transposase activity	N/A
Pfam	UHGV-1540713_27	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-1540713_27	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1540713_27	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_29	phrog_9479	132.1	3.3e-39	N/A	unknown function
UniRef90	UHGV-1540713_29	UniRef90_A0A2N0UXN8	189.0	0	Ntox24 domain-containing protein	N/A
eggNOG-mapper	UHGV-1540713_29	411489.CLOL250_02426	51.2	0.00000219	Transposase	N/A
Pfam	UHGV-1540713_29	PF15529	N/A	N/A	Bacterial toxin 24	Ntox24
COG	UHGV-1540713_29	COG1943	N/A	N/A	REP element-mobilizing transposase RayT	N/A
structural_annotation	UHGV-1540713_29	PF15529	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1540713_30	557436.Lreu_0830	94.0	1.11e-22	N/A	N/A
PHROG	UHGV-1540713_31	phrog_8680	257.1	0	N/A	unknown function
UniRef90	UHGV-1540713_31	UniRef90_A0A373KTP5	364.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540713_31	411470.RUMGNA_02208	254.0	0	N/A	N/A
Pfam	UHGV-1540713_31	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1540713_31	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_32	phrog_36	60.9	2.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540713_32	UniRef90_UPI00131A5489	73.9	0.000000000000034	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1540713_32	1408303.JNJJ01000024_gene2963	57.4	0.0000000143	N/A	N/A
Pfam	UHGV-1540713_32	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1540713_32	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1540713_32	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1540713_38	K03427	187.3	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1540713_38	phrog_6380	186.5	0	DNA methyltransferase	other
UniRef90	UHGV-1540713_38	UniRef90_A0A7X8JML8	321.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1540713_38	1401067.HMPREF0872_03510	309.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-1540713_38	MTase_I_00005	139.8	4.80645e-43	Type I methyltransferase	RM
Pfam	UHGV-1540713_38	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1540713_38	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1540713_38	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540713_39	PF19005	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_40	phrog_2245	75.2	9.9e-22	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-1540713_40	NF001611,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_41	phrog_8684	110.5	7.3e-33	N/A	unknown function
UniRef90	UHGV-1540713_41	UniRef90_A0A412ULY6	156.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1540713_41	397290.C810_01526	85.1	2.6e-19	YopX protein	N/A
Pfam	UHGV-1540713_41	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1540713_41	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1540713_41	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1540713_42	K01160	56.1	0.0000000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1540713_42	phrog_140	134.2	7e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540713_42	UniRef90_UPI001B83E533	134.0	9.81e-38	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1540713_42	272563.CD630_09360	117.0	5.9e-32	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1540713_42	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1540713_42	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1540713_42	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_43	phrog_2562	144.5	5.70328e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540713_43	UniRef90_A0A3D0NUT8	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540713_43	537013.CLOSTMETH_01717	171.0	0	N/A	N/A
Pfam	UHGV-1540713_43	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1540713_43	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1540713_43	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-1540713_44	K03111	135.3	6.89999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1540713_44	phrog_44	138.8	1.99993e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540713_44	UniRef90_R6UNN6	242.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1540713_44	1121334.KB911069_gene1617	162.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1540713_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1540713_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1540713_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1540713_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1540713_44	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1540713_45	K07455	280.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1540713_45	phrog_148	260.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540713_45	UniRef90_UPI0014317E61	305.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1540713_45	428125.CLOLEP_01822	296.0	0	RecT family	N/A
Pfam	UHGV-1540713_45	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1540713_45	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1540713_45	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1540713_45	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_46	phrog_434	310.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540713_46	UniRef90_A0A7X6XAG1	279.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-1540713_46	428125.CLOLEP_01823	278.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1540713_46	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1540713_46	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1540713_46	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1540713_46	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_48	phrog_15609	124.1	3.5e-37	N/A	unknown function
eggNOG-mapper	UHGV-1540713_48	641112.ACOK01000073_gene2872	67.4	0.000000000536	N/A	N/A
structural_annotation	UHGV-1540713_48	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_49	phrog_8470	254.0	0	N/A	unknown function
UniRef90	UHGV-1540713_49	UniRef90_UPI00165E2CD5	136.0	7.28e-31	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1540713_49	1501230.ET33_21150	134.0	1.17e-30	PcfJ-like protein	N/A
Pfam	UHGV-1540713_49	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1540713_49	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1540713_50	phrog_38338	87.3	1.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-1540713_50	693746.OBV_24020	78.2	5.75e-17	N/A	N/A
eggNOG-mapper	UHGV-1540713_55	742738.HMPREF9460_00848	53.5	0.0000000462	N/A	N/A
KOfam	UHGV-1540713_57	K18830	76.9	3.4e-22	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1540713_57	phrog_8	60.0	5.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540713_57	UniRef90_A0A1Y4F6Q1	112.0	6.43e-30	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1540713_57	642492.Clole_0718	110.0	6.57e-30	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1540713_57	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1540713_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1540713_57	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1540713_59	K07504	434.5	0	K07504; predicted type IV restriction endonuclease	N/A
PHROG	UHGV-1540713_59	phrog_4225	462.6	0	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540713_59	UniRef90_A0A348Z950	512.0	0	Type I site-specific deoxyribonuclease	N/A
eggNOG-mapper	UHGV-1540713_59	742738.HMPREF9460_04035	429.0	0	Type I restriction enzyme R protein N terminus (HSDR_N)	N/A
Pfam	UHGV-1540713_59	PF04313	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
COG	UHGV-1540713_59	COG4748	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540713_59	PF13588,TIGR04256,COG4748	N/A	N/A	N/A	N/A
KOfam	UHGV-1540713_61	K14059	97.8	1.7e-28	int; integrase	N/A
PHROG	UHGV-1540713_61	phrog_1	120.0	2.7e-35	integrase	integration and excision
UniRef90	UHGV-1540713_61	UniRef90_A0A1G5CL52	540.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-1540713_61	693746.OBV_41260	202.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1540713_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1540713_61	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1540713_61	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A