UHGV-1541587 (vOTU-068560)

Viral Genome: UHGV-1541587

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1541587
vOTU ID	vOTU-068560
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0263845
Associated BioSample	SAMN05414982
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.79
Jumbo phage	No

Genome content
Genome length (bp)	37,479
GC content	42.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	92%
Average CDS length (bps)	625.36
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
AcrCatalog	UHGV-1541587_1	cluster_11486	65.9	1.47e-16	NA	N/A
KOfam	UHGV-1541587_2	K07273	181.5	0	acm; lysozyme	N/A
PHROG	UHGV-1541587_2	phrog_291	141.3	8.00001e-42	endolysin	lysis
UniRef90	UHGV-1541587_2	UniRef90_A0A564SYY2	689.0	0	Glycosyl hydrolases family 25	N/A
eggNOG-mapper	UHGV-1541587_2	515620.EUBELI_01316	197.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-1541587_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1541587_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1541587_2	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541587_3	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_4	phrog_18218	136.1	9.40005e-41	N/A	unknown function
UniRef90	UHGV-1541587_4	UniRef90_A0A373SUI3	190.0	0	Ribonuclease	N/A
eggNOG-mapper	UHGV-1541587_4	658655.HMPREF0988_02546	155.0	0	N/A	N/A
structural_annotation	UHGV-1541587_4	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_5	phrog_1863	61.3	7.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-1541587_5	1226322.HMPREF1545_04027	66.2	0.000000000000257	N/A	N/A
PHROG	UHGV-1541587_6	phrog_20274	146.9	7.9874e-44	N/A	unknown function
UniRef90	UHGV-1541587_6	UniRef90_A0A173TUK0	200.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-1541587_6	1235799.C818_04238	159.0	0	Putative ABC-transporter type IV	N/A
Pfam	UHGV-1541587_6	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-1541587_6	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541587_6	PF06541,COG4905	N/A	N/A	N/A	N/A
UniRef90	UHGV-1541587_7	UniRef90_A0A373CM53	157.0	5.32493e-44	Acyl carrier protein	N/A
eggNOG-mapper	UHGV-1541587_7	1235799.C818_04237	301.0	0	N/A	N/A
structural_annotation	UHGV-1541587_7	PF14301	N/A	N/A	N/A	N/A
KOfam	UHGV-1541587_9	K03733	214.9	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-1541587_9	phrog_1	171.6	0	integrase	integration and excision
UniRef90	UHGV-1541587_9	UniRef90_A0A844KCF3	636.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1541587_9	742765.HMPREF9457_03372	463.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1541587_9	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1541587_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1541587_9	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1541587_9	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541587_10	PF17900	N/A	N/A	N/A	N/A
KOfam	UHGV-1541587_11	K06236	42.0	0.0000000000046	COL1A; collagen type I alpha	N/A
PHROG	UHGV-1541587_11	phrog_819	54.0	0.0000000000000016	tail protein	tail
UniRef90	UHGV-1541587_11	UniRef90_UPI0006C3C855	551.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1541587_11	877414.ATWA01000019_gene2051	93.2	1.84e-18	N/A	N/A
Pfam	UHGV-1541587_11	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-1541587_12	K19719	96.9	3.2e-29	COL2A; collagen type II alpha	N/A
PHROG	UHGV-1541587_12	phrog_819	115.8	5.30001e-40	tail protein	tail
UniRef90	UHGV-1541587_12	UniRef90_UPI0006C6DE05	259.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1541587_12	290402.Cbei_3387	161.0	4.2039e-45	N/A	N/A
Pfam	UHGV-1541587_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1541587_13	phrog_16164	90.0	1.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1541587_13	33035.JPJF01000093_gene2236	164.0	0	N/A	N/A
structural_annotation	UHGV-1541587_13	PF10651,NF032891	N/A	N/A	N/A	N/A
KOfam	UHGV-1541587_14	K05480	40.6	0.000000000026	EDA; ectodysplasin-A	N/A
PHROG	UHGV-1541587_14	phrog_6320	43.9	0.0000000000027	tail fiber protein	tail
UniRef90	UHGV-1541587_14	UniRef90_A0A374E9Q0	308.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-1541587_14	1232452.BAIB02000007_gene1610	60.8	0.0000000461	N/A	N/A
Pfam	UHGV-1541587_14	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1541587_14	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_15	phrog_11037	139.4	3.39997e-41	N/A	unknown function
UniRef90	UHGV-1541587_15	UniRef90_A0A844KDJ1	635.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-1541587_15	33035.JPJF01000093_gene2240	308.0	0	NlpC/P60 family	N/A
Pfam	UHGV-1541587_15	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-1541587_15	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-1541587_15	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1541587_15	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_16	phrog_13289	443.5	0	tail protein	tail
UniRef90	UHGV-1541587_16	UniRef90_A0A844KBR1	1055.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1541587_16	1235798.C817_02568	484.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1541587_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1541587_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1541587_16	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-1541587_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_17	phrog_33	67.3	3.7e-19	distal tail protein Dit	tail
UniRef90	UHGV-1541587_17	UniRef90_A0A844KEE5	473.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1541587_17	1232452.BAIB02000007_gene1615	231.0	0	phage tail	N/A
COG	UHGV-1541587_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1541587_17	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_18	phrog_1272	217.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1541587_18	UniRef90_UPI0006C3C180	1161.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1541587_18	1035184.HMPREF1042_1328	314.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-1541587_18	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1541587_18	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1541587_18	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-1541587_21	phrog_88	93.8	1.7e-27	major tail protein	tail
UniRef90	UHGV-1541587_21	UniRef90_UPI0006C1EB28	405.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1541587_21	1033737.CAEV01000029_gene288	58.9	0.0000000401	N/A	N/A
Pfam	UHGV-1541587_21	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-1541587_21	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1541587_21	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_22	phrog_5	51.2	0.000000000000029	tail completion or Neck1 protein	connector
UniRef90	UHGV-1541587_22	UniRef90_D4M595	189.0	0	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-1541587_22	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541587_23	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1541587_24	UniRef90_A0A844KCF4	229.0	0	Phage head closure protein	N/A
NCBIFam	UHGV-1541587_24	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1541587_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_26	phrog_10	83.1	2.1e-24	major head protein	head and packaging
UniRef90	UHGV-1541587_26	UniRef90_A0A844KDK0	729.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1541587_26	1232452.BAIB02000007_gene1625	454.0	0	Phage capsid family	N/A
Pfam	UHGV-1541587_26	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1541587_26	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1541587_26	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1541587_26	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1541587_27	K01358	114.0	1.7e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1541587_27	phrog_94	179.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1541587_27	UniRef90_D4M590	496.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1541587_27	1235792.C808_00085	208.0	0	Clp protease	N/A
Pfam	UHGV-1541587_27	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1541587_27	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1541587_27	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_28	phrog_12	81.4	8.4e-24	portal protein	head and packaging
UniRef90	UHGV-1541587_28	UniRef90_UPI00156D5DC9	610.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1541587_28	1232452.BAIB02000007_gene1627	278.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1541587_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1541587_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1541587_28	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_29	phrog_9	256.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1541587_29	UniRef90_D4M588	1099.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-1541587_29	1232452.BAIB02000007_gene1629	535.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1541587_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1541587_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1541587_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1541587_29	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_30	phrog_5110	96.9	1.2e-28	terminase small subunit	head and packaging
UniRef90	UHGV-1541587_30	UniRef90_A0A3B9JFI2	64.3	0.00000000004	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-1541587_30	1423775.BAMN01000009_gene400	50.8	0.00000123	N/A	N/A
Pfam	UHGV-1541587_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1541587_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-1541587_31	K07451	51.3	0.000000000000022	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1541587_31	phrog_119	82.6	4.8e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1541587_31	UniRef90_D4M587	283.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1541587_31	1232452.BAIB02000007_gene1631	94.0	5.44e-23	HNH nucleases	N/A
Pfam	UHGV-1541587_31	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1541587_31	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1541587_31	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_32	phrog_36	87.9	1.2e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-1541587_32	UniRef90_UPI001899709D	222.0	0	N/A	N/A
eggNOG-mapper	UHGV-1541587_32	658655.HMPREF0988_02569	214.0	0	sigma factor activity	N/A
Pfam	UHGV-1541587_32	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1541587_32	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1541587_32	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_39	phrog_7566	114.9	2.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-1541587_39	665950.HMPREF1025_02547	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-1541587_40	1196322.A370_05726	63.9	0.00000000000333	N/A	N/A
PHROG	UHGV-1541587_41	phrog_15077	85.2	1.3e-24	N/A	unknown function
UniRef90	UHGV-1541587_41	UniRef90_A0A3A6HZA9	228.0	0	N/A	N/A
eggNOG-mapper	UHGV-1541587_41	1280698.AUJS01000007_gene1019	373.0	0	N/A	N/A
structural_annotation	UHGV-1541587_41	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_42	phrog_8470	230.9	0	N/A	unknown function
UniRef90	UHGV-1541587_42	UniRef90_UPI001C01E393	580.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1541587_42	1280698.AUJS01000007_gene1018	848.0	0	N/A	N/A
Pfam	UHGV-1541587_42	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1541587_42	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_43	phrog_4433	70.3	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-1541587_43	1280698.AUJS01000007_gene1017	188.0	0	N/A	N/A
eggNOG-mapper	UHGV-1541587_44	1280698.AUJS01000007_gene1016	228.0	0	N/A	N/A
KOfam	UHGV-1541587_45	K03469	63.3	5.3e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1541587_45	phrog_531	65.1	1.2e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1541587_45	UniRef90_D4M578	285.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-1541587_45	665950.HMPREF1025_02551	150.0	8.40779e-45	RNase H	N/A
Pfam	UHGV-1541587_45	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1541587_45	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1541587_45	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_46	phrog_3584	154.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1541587_46	665950.HMPREF1025_02552	315.0	0	N/A	N/A
structural_annotation	UHGV-1541587_46	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-1541587_52	K18830	70.7	2.4e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1541587_52	phrog_2967	53.6	0.0000000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-1541587_52	UniRef90_A0A1Q6K9L5	244.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1541587_52	1280698.AUJS01000007_gene1002	142.0	1.04004e-41	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1541587_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1541587_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1541587_52	PF01381,NF041951,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-1541587_54	phrog_38135	63.7	2.7e-18	N/A	unknown function
UniRef90	UHGV-1541587_54	UniRef90_UPI001F3985DB	669.0	0	N/A	N/A
eggNOG-mapper	UHGV-1541587_54	658088.HMPREF0987_00537	79.3	0.000000000000126	DNA/RNA non-specific endonuclease	N/A
Pfam	UHGV-1541587_54	PF14020	N/A	N/A	N/A	DUF4236
structural_annotation	UHGV-1541587_54	PF14020,PF21602	N/A	N/A	N/A	N/A
KOfam	UHGV-1541587_55	K06400	247.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1541587_55	phrog_95	256.5	0	integrase	integration and excision
UniRef90	UHGV-1541587_55	UniRef90_A0A374E9M4	978.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1541587_55	97139.C824_00068	689.0	0	Recombinase	N/A
Pfam	UHGV-1541587_55	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1541587_55	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1541587_55	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1541587_55	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A