UHGV-1541986 (vOTU-124712)

Viral Genome: UHGV-1541986

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1541986
vOTU ID	vOTU-124712
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0263595
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.39
Jumbo phage	No

Genome content
Genome length (bp)	36,777
GC content	39.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	92%
Average CDS length (bps)	492.91
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1541986_1	K18830	70.2	3.8e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1541986_1	phrog_2967	62.0	9.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1541986_1	UniRef90_A0A1Q6KIG7	223.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1541986_1	1235797.C816_03553	110.0	4.05e-29	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1541986_1	retron_type_VI_hth_cluster2_1	49.6	0.00000000000007	N/A	Retron
Pfam	UHGV-1541986_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1541986_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1541986_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541986_5	PF11127	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541986_7	PF15513,NF007469	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_9	phrog_674	185.2	0	N/A	unknown function
UniRef90	UHGV-1541986_9	UniRef90_A0A3R6B153	450.0	0	N/A	N/A
eggNOG-mapper	UHGV-1541986_9	411460.RUMTOR_02065	166.0	0	N/A	N/A
Pfam	UHGV-1541986_9	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1541986_9	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_10	phrog_155	121.4	6.9e-36	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1541986_10	UniRef90_A0A412KFC1	436.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1541986_10	357809.Cphy_2988	223.0	0	ERF superfamily	N/A
Pfam	UHGV-1541986_10	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1541986_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1541986_10	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_11	phrog_72	53.2	0.0000000000000037	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1541986_11	1304866.K413DRAFT_1197	119.0	1.14e-31	N/A	N/A
PHROG	UHGV-1541986_12	phrog_7566	101.7	3.4e-30	N/A	unknown function
UniRef90	UHGV-1541986_12	UniRef90_A0A412KF94	209.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1541986_12	411902.CLOBOL_05695	57.0	0.00000000257	N/A	N/A
KOfam	UHGV-1541986_14	K01160	42.6	0.000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1541986_14	phrog_1682	74.8	1.2e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1541986_14	UniRef90_A0A412FH46	254.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1541986_14	1235790.C805_00029	163.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-1541986_14	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1541986_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1541986_14	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_15	phrog_19658	45.3	0.00000000000089	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1541986_15	1071400.LBUCD034_0926	114.0	2.9e-27	DnaD domain protein	N/A
COG	UHGV-1541986_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1541986_15	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1541986_16	K02315	148.8	4.06377e-44	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1541986_16	phrog_50	144.8	6.30584e-43	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1541986_16	UniRef90_A0A1Q6KIH9	435.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1541986_16	742733.HMPREF9469_01844	230.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1541986_16	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1541986_16	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1541986_16	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_19	phrog_10455	83.9	1.4e-24	N/A	unknown function
UniRef90	UHGV-1541986_19	UniRef90_R7N9Z9	139.0	6.93993e-41	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1541986_21	1235790.C805_00035	58.2	0.00000000837	N/A	N/A
structural_annotation	UHGV-1541986_21	PF18597	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_23	phrog_8684	100.5	1.1e-29	N/A	unknown function
UniRef90	UHGV-1541986_23	UniRef90_A0A6L6XDP0	202.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1541986_23	397290.C810_01526	77.4	2.21e-16	YopX protein	N/A
Pfam	UHGV-1541986_23	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1541986_23	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1541986_23	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1541986_24	UniRef90_UPI001C02F342	79.3	0.00000000000000146	N/A	N/A
eggNOG-mapper	UHGV-1541986_24	1235793.C809_01910	50.8	0.00000987	N/A	N/A
PHROG	UHGV-1541986_25	phrog_599	50.5	0.000000000000045	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1541986_25	UniRef90_A0A412KFB8	167.0	0	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-1541986_25	1235790.C805_00069	82.0	1.38e-19	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1541986_25	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1541986_25	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1541986_25	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_26	phrog_20593	65.3	5.6e-19	N/A	unknown function
KOfam	UHGV-1541986_28	K00390	43.9	0.000000000000088	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1541986_28	phrog_424	122.8	2.2e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1541986_28	UniRef90_A0A3A9F7M0	710.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1541986_28	1235799.C818_02649	675.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-1541986_28	BrxP_00001	42.5	0.00000000000022	BrxP	BREX
Pfam	UHGV-1541986_28	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1541986_28	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1541986_28	PF01507,MF_00063,NF002537	N/A	N/A	N/A	N/A
UniRef90	UHGV-1541986_29	UniRef90_UPI001C01D3C5	540.0	0	N/A	N/A
eggNOG-mapper	UHGV-1541986_29	622312.ROSEINA2194_04464	475.0	0	N/A	N/A
Pfam	UHGV-1541986_29	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-1541986_29	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1541986_33	1117958.PE143B_0129235	50.1	0.00000063	N/A	N/A
UniRef90	UHGV-1541986_36	UniRef90_A0A412KFA7	141.0	1.45034e-42	ABC transporter ATP-binding protein	N/A
UniRef90	UHGV-1541986_38	UniRef90_A0A3R6F7K5	126.0	7.92e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1541986_38	1235799.C818_04243	95.9	2.08e-25	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1541986_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1541986_38	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_41	phrog_33130	95.3	2.8e-28	N/A	unknown function
UniRef90	UHGV-1541986_41	UniRef90_A0A3B9CD52	126.0	3.44e-36	S1-like domain-containing protein	N/A
structural_annotation	UHGV-1541986_41	PF10922	N/A	N/A	N/A	N/A
KOfam	UHGV-1541986_42	K06909	212.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1541986_42	phrog_5653	97.4	1.6e-28	terminase large subunit	head and packaging
UniRef90	UHGV-1541986_42	UniRef90_A0A3R5WSV0	1065.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1541986_42	33035.JPJF01000106_gene3136	313.0	0	Terminase small subunit	N/A
Pfam	UHGV-1541986_42	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-1541986_42	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1541986_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1541986_42	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_43	phrog_1233	92.5	4.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-1541986_43	936375.HMPREF1152_1074	105.0	4.77e-28	N/A	N/A
structural_annotation	UHGV-1541986_43	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_45	phrog_533	250.6	0	portal protein	head and packaging
UniRef90	UHGV-1541986_45	UniRef90_A0A3R5WTT1	934.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1541986_45	476272.RUMHYD_01758	330.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1541986_45	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_47	phrog_556	91.6	5.5e-27	minor head protein	head and packaging
UniRef90	UHGV-1541986_47	UniRef90_UPI000E4A8F9F	143.0	1.98003e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-1541986_47	1449050.JNLE01000003_gene3886	52.4	0.00000127	N/A	N/A
Pfam	UHGV-1541986_47	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1541986_47	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_48	phrog_581	210.4	0	minor head protein	head and packaging
UniRef90	UHGV-1541986_48	UniRef90_A0A6L5YIK0	575.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1541986_48	645991.Sgly_0338	163.0	9.05939e-42	N/A	N/A
Pfam	UHGV-1541986_48	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1541986_48	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541986_48	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1541986_49	1235790.C805_00057	59.7	0.0000000000466	N/A	N/A
structural_annotation	UHGV-1541986_49	PF04545,MF_00674,NF001067,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1541986_50	658655.HMPREF0988_00919	85.1	5.99e-19	N/A	N/A
eggNOG-mapper	UHGV-1541986_51	658655.HMPREF0988_00918	87.8	4.51e-22	N/A	N/A
PHROG	UHGV-1541986_52	phrog_16490	217.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1541986_52	397290.C810_01328	200.0	0	N/A	N/A
PHROG	UHGV-1541986_53	phrog_20016	215.1	0	N/A	unknown function
UniRef90	UHGV-1541986_53	UniRef90_A0A2Z4QB67	153.0	2.8026e-45	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1541986_53	397290.C810_05214	218.0	0	N/A	N/A
structural_annotation	UHGV-1541986_53	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1541986_54	658655.HMPREF0988_00915	120.0	9.36e-31	N/A	N/A
PHROG	UHGV-1541986_55	phrog_1233	46.6	0.00000000000058	N/A	unknown function
eggNOG-mapper	UHGV-1541986_55	397290.C810_01336	120.0	7.37e-34	N/A	N/A
structural_annotation	UHGV-1541986_55	PF20352,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_57	phrog_194	52.3	0.000000000000011	head scaffolding protein	head and packaging
UniRef90	UHGV-1541986_57	UniRef90_UPI000E538A87	112.0	1.54e-27	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1541986_57	476272.RUMHYD_01775	106.0	7.13e-26	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1541986_57	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1541986_58	phrog_544	131.8	4.8e-39	major head protein	head and packaging
UniRef90	UHGV-1541986_58	UniRef90_A0A395X7A1	368.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1541986_58	476272.RUMHYD_01776	325.0	0	N/A	N/A
structural_annotation	UHGV-1541986_58	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_59	phrog_541	90.6	1.2e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-1541986_59	476272.RUMHYD_01778	84.0	2.48e-18	N/A	N/A
PHROG	UHGV-1541986_60	phrog_3366	91.4	8.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1541986_60	1235790.C805_00078	157.0	0	N/A	N/A
structural_annotation	UHGV-1541986_60	PF20536,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1541986_61	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_62	phrog_3099	82.2	6.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1541986_62	931276.Cspa_c07510	55.1	0.000000396	N/A	N/A
structural_annotation	UHGV-1541986_62	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1541986_63	UniRef90_A0A412KF72	293.0	0	RNA polymerase subunit sigma	N/A
structural_annotation	UHGV-1541986_63	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_64	phrog_706	123.0	1.8e-36	N/A	unknown function
UniRef90	UHGV-1541986_64	UniRef90_C7GBZ7	263.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1541986_64	1235790.C805_00084	135.0	3.23e-37	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1541986_64	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1541986_64	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_65	phrog_1535	101.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1541986_65	1280689.AUJC01000003_gene976	147.0	2.62e-33	phage tail tape measure protein	N/A
COG	UHGV-1541986_65	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1541986_66	phrog_1194	47.4	0.00000000000028	N/A	unknown function
eggNOG-mapper	UHGV-1541986_66	1120746.CCNL01000014_gene2106	103.0	7.01e-27	N/A	N/A
structural_annotation	UHGV-1541986_66	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_67	phrog_13879	283.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1541986_67	1120746.CCNL01000014_gene2107	353.0	0	N/A	N/A
structural_annotation	UHGV-1541986_67	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1541986_69	phrog_18725	82.0	3.4e-24	N/A	unknown function