UHGV-1544101 (vOTU-099159)

Viral Genome: UHGV-1544101

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1544101
vOTU ID	vOTU-099159
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0199180
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.47 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.25
Jumbo phage	No

Genome content
Genome length (bp)	21,836
GC content	52.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	37
CDS density	94%
Average CDS length (bps)	552.08
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.47)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1544101_1	718252.FP2_21350	176.0	0	DNA binding	N/A
Pfam	UHGV-1544101_1	PF20188	N/A	N/A	N/A	DUF6551
COG	UHGV-1544101_1	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
UniRef90	UHGV-1544101_2	UniRef90_F7V2L9	147.0	8.83e-41	NTP pyrophosphohydrolase including oxidative damage repair enzyme	N/A
eggNOG-mapper	UHGV-1544101_2	718252.FP2_21350	341.0	0	DNA binding	N/A
Pfam	UHGV-1544101_2	PF20188	N/A	N/A	N/A	DUF6551
COG	UHGV-1544101_2	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-1544101_4	K06400	287.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1544101_4	phrog_95	270.2	0	integrase	integration and excision
UniRef90	UHGV-1544101_4	UniRef90_D4JZR5	1058.0	0	Site-specific recombinases, DNA invertase Pin homologs	N/A
eggNOG-mapper	UHGV-1544101_4	718252.FP2_21330	1058.0	0	N/A	N/A
Pfam	UHGV-1544101_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1544101_4	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1544101_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1544101_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1544101_4	PF07508,PF00239,PF18822,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1544101_6	K07482	47.9	0.00000000000021	K07482; transposase, IS30 family	N/A
PHROG	UHGV-1544101_6	phrog_11420	99.8	1.3e-29	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1544101_6	UniRef90_A0A1Q6KZ75	165.0	0	HTH_38 domain-containing protein	N/A
Pfam	UHGV-1544101_6	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
COG	UHGV-1544101_6	COG1713	N/A	N/A	Diadenosine tetraphosphatase YqeK or a related HD superfamily phosphohydrolase	N/A
structural_annotation	UHGV-1544101_6	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_9	phrog_253	144.2	6.60012e-43	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1544101_9	UniRef90_UPI001898EED4	209.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1544101_9	1226322.HMPREF1545_04074	201.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-1544101_9	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1544101_9	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_10	phrog_14970	320.9	0	N/A	unknown function
UniRef90	UHGV-1544101_10	UniRef90_A0A015RRM9	206.0	0	Rad52/22 double-strand break repair family protein	N/A
eggNOG-mapper	UHGV-1544101_10	1226322.HMPREF1545_04073	321.0	0	double-strand break repair protein	N/A
COG	UHGV-1544101_10	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1544101_10	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_11	phrog_270	119.4	4.3e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1544101_11	UniRef90_UPI00164BB1D1	108.0	7.15e-25	transcriptional regulator	N/A
eggNOG-mapper	UHGV-1544101_11	1226322.HMPREF1545_04072	281.0	0	HNH endonuclease	N/A
COG	UHGV-1544101_11	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1544101_11	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1544101_12	K02315	175.6	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1544101_12	phrog_50	154.0	1.4013e-45	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1544101_12	UniRef90_H7BWC4	567.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1544101_12	1226322.HMPREF1545_04071	402.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1544101_12	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1544101_12	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1544101_12	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1544101_12	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-1544101_13	K01160	52.8	0.000000000000012	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1544101_13	phrog_1682	90.4	2.6e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1544101_13	UniRef90_A0A1Q6KZJ4	263.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1544101_13	1226322.HMPREF1545_04070	227.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1544101_13	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1544101_13	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_14	phrog_9958	156.4	0	N/A	unknown function
UniRef90	UHGV-1544101_14	UniRef90_A0A1Q6KZ66	352.0	0	N/A	N/A
eggNOG-mapper	UHGV-1544101_14	658655.HMPREF0988_00874	61.6	0.00000000881	N/A	N/A
Pfam	UHGV-1544101_14	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1544101_14	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-1544101_17	UniRef90_U2S8S7	129.0	5.31e-36	30S ribosomal protein S18 domain protein	N/A
structural_annotation	UHGV-1544101_17	PF18300	N/A	N/A	N/A	N/A
KOfam	UHGV-1544101_19	K05925	92.5	5.1e-27	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-1544101_19	phrog_359	238.0	0	DNA methyltransferase	other
UniRef90	UHGV-1544101_19	UniRef90_A0A1Q6KQ29	382.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-1544101_19	1226322.HMPREF1545_04067	346.0	0	Belongs to the MT-A70-like family	N/A
PADLOC	UHGV-1544101_19	MTase_II_00048	217.7	0	Type II methyltransferase	RM
Pfam	UHGV-1544101_19	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-1544101_19	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-1544101_19	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_20	phrog_22529	148.9	1.26117e-44	N/A	unknown function
UniRef90	UHGV-1544101_20	UniRef90_A0A1Q6KQ40	338.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1544101_20	1226322.HMPREF1545_04061	184.0	0	protein conserved in bacteria	N/A
Pfam	UHGV-1544101_20	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1544101_20	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1544101_20	PF06725,NF040677,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_21	phrog_3301	139.1	1.79997e-41	pyrophosphatase	other
eggNOG-mapper	UHGV-1544101_21	1226322.HMPREF1545_04060	164.0	0	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-1544101_21	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
KOfam	UHGV-1544101_22	K03111	134.5	1.3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1544101_22	phrog_44	135.4	3.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1544101_22	UniRef90_A0A1C6AHY8	246.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1544101_22	1226322.HMPREF1545_04059	136.0	1.36e-39	Single-strand binding protein family	N/A
Pfam	UHGV-1544101_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1544101_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1544101_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1544101_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1544101_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1544101_23	PF04545,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1544101_24	K07474	155.7	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1544101_24	phrog_51	148.1	4.62428e-44	terminase small subunit	head and packaging
UniRef90	UHGV-1544101_24	UniRef90_A0A1Q6KQ99	343.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1544101_24	1226322.HMPREF1545_04056	247.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-1544101_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1544101_24	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1544101_24	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1544101_25	K06909	313.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1544101_25	phrog_3717	267.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1544101_25	UniRef90_H7BWE9	868.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1544101_25	1226322.HMPREF1545_04055	835.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1544101_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1544101_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1544101_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1544101_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1544101_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_26	phrog_64	310.4	0	portal protein	head and packaging
UniRef90	UHGV-1544101_26	UniRef90_UPI001898D14F	872.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1544101_26	1226322.HMPREF1545_04054	823.0	0	phage portal protein, SPP1	N/A
Pfam	UHGV-1544101_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1544101_26	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_27	phrog_115	360.3	0	minor head protein	head and packaging
UniRef90	UHGV-1544101_27	UniRef90_A0A1C6AIQ5	1028.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-1544101_27	1226322.HMPREF1545_04053	585.0	0	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-1544101_27	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1544101_27	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1544101_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1544101_27	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1544101_28	903814.ELI_3212	53.1	0.00000000981	N/A	N/A
PHROG	UHGV-1544101_29	phrog_194	90.6	1.6e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-1544101_29	UniRef90_U2S0A2	262.0	0	Putative phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1544101_29	1118054.CAGW01000102_gene4698	101.0	5.55e-24	Phage minor structural protein GP20	N/A
Pfam	UHGV-1544101_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1544101_29	PF06810	N/A	N/A	N/A	N/A
UniRef90	UHGV-1544101_30	UniRef90_A0A644YJM4	394.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-1544101_30	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1544101_31	PF12949,PF18885	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_32	phrog_132	87.5	1e-25	head-tail adaptor	connector
UniRef90	UHGV-1544101_32	UniRef90_UPI0006821A34	223.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1544101_32	1226322.HMPREF1545_04047	216.0	0	N/A	N/A
Pfam	UHGV-1544101_32	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1544101_32	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_33	phrog_615	86.3	3e-25	head-tail adaptor	connector
UniRef90	UHGV-1544101_33	UniRef90_UPI001958CF31	123.0	1.02e-33	ABC transporter ATP-binding protein	N/A
eggNOG-mapper	UHGV-1544101_33	1226322.HMPREF1545_04046	196.0	0	N/A	N/A
structural_annotation	UHGV-1544101_33	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_34	phrog_5	50.3	0.000000000000066	tail completion or Neck1 protein	connector
UniRef90	UHGV-1544101_34	UniRef90_UPI0012B5F359	219.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1544101_34	1121121.KB894312_gene3153	91.7	4.09e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1544101_34	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1544101_34	PF17395,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_35	phrog_525	73.8	2.5e-21	N/A	unknown function
UniRef90	UHGV-1544101_35	UniRef90_M9L968	91.7	8.72e-21	Outer membrane protein	N/A
eggNOG-mapper	UHGV-1544101_35	1226322.HMPREF1545_04045	179.0	0	N/A	N/A
Pfam	UHGV-1544101_35	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-1544101_35	PF20765,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1544101_36	phrog_966	50.5	0.000000000000024	N/A	unknown function
KOfam	UHGV-1544101_37	K01929	64.3	1.4e-18	murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]	N/A
PHROG	UHGV-1544101_37	phrog_279	110.5	1.8e-32	tail sheath	tail
UniRef90	UHGV-1544101_37	UniRef90_W4V8J5	183.0	0	Phage-like element PBSX protein XkdK	N/A
eggNOG-mapper	UHGV-1544101_37	1226322.HMPREF1545_04043	231.0	0	PFAM Phage tail sheath protein	N/A
Pfam	UHGV-1544101_37	PF08245	N/A	N/A	Mur ligase middle domain	Mur_ligase_M