UHGV-1546342 (vOTU-115709)

Viral Genome: UHGV-1546342

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1546342
vOTU ID	vOTU-115709
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0295645
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.57 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.03
Jumbo phage	No

Genome content
Genome length (bp)	31,935
GC content	37.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	97%
Average CDS length (bps)	706.84
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.57)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1546342_1	phrog_2486	105.9	2.2e-31	N/A	unknown function
UniRef90	UHGV-1546342_1	UniRef90_A0A380JW97	71.6	0.0000000000000714	N/A	N/A
KOfam	UHGV-1546342_2	K03546	63.0	4e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1546342_2	phrog_1499	495.8	0	N/A	unknown function
UniRef90	UHGV-1546342_2	UniRef90_UPI00066DDE39	610.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1546342_2	1140001.I571_01812	538.0	0	AAA domain	N/A
Pfam	UHGV-1546342_2	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1546342_2	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1546342_2	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_3	phrog_124	250.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1546342_3	UniRef90_UPI00066A31E3	494.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1546342_3	1403946.Q615_SPAC00127G0154	458.0	0	AAA domain	N/A
Pfam	UHGV-1546342_3	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1546342_3	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_4	phrog_2698	210.2	0	N/A	unknown function
UniRef90	UHGV-1546342_4	UniRef90_A0A4V0ECJ9	244.0	0	N/A	N/A
eggNOG-mapper	UHGV-1546342_4	1403946.Q615_SPAC00127G0153	248.0	0	N/A	N/A
structural_annotation	UHGV-1546342_4	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-1546342_5	K17677	355.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1546342_5	phrog_16	286.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1546342_5	UniRef90_UPI00066ACFC6	890.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1546342_5	1260356.D920_00099	803.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1546342_5	mREase_IV_00005	138.6	5.40004e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1546342_5	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1546342_5	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1546342_5	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1546342_5	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1546342_6	K07505	414.6	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1546342_6	phrog_2597	1179.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1546342_6	UniRef90_UPI00066B3960	1221.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1546342_6	936580.HMPREF1516_0733	998.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1546342_6	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1546342_6	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1546342_6	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1546342_6	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1546342_7	K01160	46.9	0.00000000000073	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1546342_7	phrog_140	112.3	4.1e-33	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1546342_7	UniRef90_A0A0P0NA62	206.0	0	Phage resolvase	N/A
eggNOG-mapper	UHGV-1546342_7	1123315.AUIP01000003_gene219	216.0	0	crossover junction endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1546342_7	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1546342_7	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1546342_7	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_8	phrog_3745	72.0	4.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1546342_8	1423734.JCM14202_3068	54.7	0.00000000542	N/A	N/A
PHROG	UHGV-1546342_11	phrog_1485	107.9	1.2e-31	N/A	unknown function
UniRef90	UHGV-1546342_11	UniRef90_UPI00101D1A71	112.0	1.46e-30	nucleotide modification associated domain-containing protein	N/A
eggNOG-mapper	UHGV-1546342_11	938278.CAJO01000051_gene805	98.2	2.32e-25	N/A	N/A
Pfam	UHGV-1546342_11	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
KOfam	UHGV-1546342_13	K22300	40.6	0.000000000054	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1546342_13	phrog_8	43.8	0.0000000000059	transcriptional regulator	transcription regulation
UniRef90	UHGV-1546342_13	UniRef90_A0A2X0PH47	71.2	0.0000000000000198	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1546342_13	1158606.I579_00035	67.8	0.000000000000701	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1546342_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1546342_13	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1546342_13	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1546342_15	K22300	49.9	0.00000000000007	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1546342_15	phrog_8	47.3	0.00000000000051	transcriptional regulator	transcription regulation
UniRef90	UHGV-1546342_15	UniRef90_UPI001D120879	55.1	0.000000998	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1546342_15	748224.HMPREF9436_00429	53.9	0.0000012	N/A	N/A
Pfam	UHGV-1546342_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1546342_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-1546342_16	562981.HMPREF0428_01830	73.9	0.0000000000000256	N/A	N/A
KOfam	UHGV-1546342_17	K00558	299.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1546342_17	phrog_116	323.1	0	DNA methyltransferase	other
UniRef90	UHGV-1546342_17	UniRef90_A0A4G3U455	585.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1546342_17	562981.HMPREF0428_01833	548.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1546342_17	MTase_II_00058	327.4	0	Type II methyltransferase	RM
Pfam	UHGV-1546342_17	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1546342_17	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1546342_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1546342_17	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_18	phrog_478	124.1	6.1e-37	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-1546342_18	1497679.EP56_15100	169.0	0	N/A	N/A
KOfam	UHGV-1546342_20	K06191	95.8	4.6e-28	nrdH; glutaredoxin-like protein NrdH	N/A
PHROG	UHGV-1546342_20	phrog_22	59.5	6.7e-17	thioredoxin domain	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1546342_20	UniRef90_A0A420YQR7	133.0	2.01e-39	Glutaredoxin-like protein NrdH	N/A
eggNOG-mapper	UHGV-1546342_20	655812.HMPREF0061_1114	80.9	2.49e-19	Glutaredoxin	N/A
Pfam	UHGV-1546342_20	PF00462	N/A	N/A	Glutaredoxin	Glutaredoxin
NCBIFam	UHGV-1546342_20	TIGR02194.1	N/A	N/A	glutaredoxin-like protein NrdH	N/A
COG	UHGV-1546342_20	COG0695	N/A	N/A	Glutaredoxin	N/A
structural_annotation	UHGV-1546342_20	PF00462,MF_01132,NF007657,COG0695	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_21	phrog_36	79.0	7e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1546342_21	UniRef90_A0A2I1YI57	99.4	5.1e-24	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1546342_21	1069533.Sinf_0781	97.4	4.85e-24	Transcriptional regulator, RinA family	N/A
NCBIFam	UHGV-1546342_21	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-1546342_21	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1546342_22	K07474	112.2	9.7e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1546342_22	phrog_51	131.7	5.2e-39	terminase small subunit	head and packaging
UniRef90	UHGV-1546342_22	UniRef90_A0A380JZD1	202.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1546342_22	663952.SDD27957_09180	200.0	0	Terminase, small subunit	N/A
Pfam	UHGV-1546342_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1546342_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1546342_22	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1546342_23	K06909	374.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1546342_23	phrog_3717	270.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1546342_23	UniRef90_A0A141DZZ4	765.0	0	Terminase, large subunit	N/A
eggNOG-mapper	UHGV-1546342_23	1000588.HMPREF9965_1706	767.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-1546342_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1546342_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1546342_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1546342_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
HAMAP	UHGV-1546342_23	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-1546342_23	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_24	phrog_64	411.1	0	portal protein	head and packaging
UniRef90	UHGV-1546342_24	UniRef90_A0A5C6MBM4	471.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1546342_24	1449343.JQLQ01000002_gene1530	466.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1546342_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1546342_24	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1546342_24	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_25	phrog_115	230.9	0	minor head protein	head and packaging
UniRef90	UHGV-1546342_25	UniRef90_UPI0005524820	195.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1546342_25	1449343.JQLQ01000002_gene1526	195.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1546342_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1546342_25	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1546342_25	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_27	phrog_918	105.9	1.7e-31	N/A	unknown function
UniRef90	UHGV-1546342_27	UniRef90_UPI001D1557C3	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-1546342_27	1123315.AUIP01000003_gene241	144.0	4.34403e-44	N/A	N/A
Pfam	UHGV-1546342_27	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1546342_27	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_28	phrog_172	109.7	3.3e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-1546342_28	UniRef90_A0A4D6B6B6	119.0	5.44e-31	Capsid and scaffold protein	N/A
eggNOG-mapper	UHGV-1546342_28	1000588.HMPREF9965_1701	108.0	1.09e-27	N/A	N/A
Pfam	UHGV-1546342_28	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1546342_28	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_29	phrog_422	238.3	0	major head protein	head and packaging
UniRef90	UHGV-1546342_29	UniRef90_A0A0Z8H3K7	432.0	0	Carbohydrate-binding family V/XII	N/A
eggNOG-mapper	UHGV-1546342_29	1277891.M1IF90_9CAUD	438.0	0	N/A	N/A
Pfam	UHGV-1546342_29	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1546342_29	PF19821,MF_04119,TIGR04387,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_30	phrog_132	83.5	2e-24	head-tail adaptor	connector
UniRef90	UHGV-1546342_30	UniRef90_UPI000829FFA7	83.2	1.58e-18	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1546342_30	1294142.CINTURNW_1692	87.0	8.55e-21	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1546342_30	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1546342_30	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_31	phrog_2168	121.5	3.4e-36	N/A	unknown function
eggNOG-mapper	UHGV-1546342_31	1280689.AUJC01000003_gene969	95.5	4.44e-24	N/A	N/A
structural_annotation	UHGV-1546342_31	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_32	phrog_5	84.4	1.9e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-1546342_32	UniRef90_A0A0V8CZK9	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-1546342_32	416870.llmg_0839	189.0	0	N/A	N/A
Pfam	UHGV-1546342_32	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1546342_32	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1546342_32	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_33	phrog_78	50.7	0.000000000000035	tail terminator	connector
eggNOG-mapper	UHGV-1546342_33	1158602.I590_01689	91.7	2.88e-22	N/A	N/A
structural_annotation	UHGV-1546342_33	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_34	phrog_158	83.1	4.4e-24	major tail protein	tail
UniRef90	UHGV-1546342_34	UniRef90_A0A544TAA7	159.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1546342_34	1499683.CCFF01000017_gene2926	150.0	8.40779e-45	Phage tail tube protein, TTP	N/A
Pfam	UHGV-1546342_34	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1546342_34	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1546342_35	UniRef90_UPI000B4B93F4	77.8	5.36e-16	N/A	N/A
eggNOG-mapper	UHGV-1546342_35	1293597.BN147_01425	72.0	0.0000000000000196	N/A	N/A
Pfam	UHGV-1546342_35	PF19591	N/A	N/A	N/A	DUF6096
PHROG	UHGV-1546342_36	phrog_2066	95.7	3.6e-28	N/A	unknown function
UniRef90	UHGV-1546342_36	UniRef90_A0A0B2XDU9	62.4	0.000000000377	N/A	N/A
eggNOG-mapper	UHGV-1546342_36	1140002.I570_01434	68.9	0.000000000000139	N/A	N/A
PHROG	UHGV-1546342_37	phrog_1535	363.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1546342_37	UniRef90_A0A4U9RES2	156.0	3.34e-35	TMP repeat family	N/A
eggNOG-mapper	UHGV-1546342_37	33035.JPJF01000093_gene2243	205.0	0	phage tail tape measure protein	N/A
COG	UHGV-1546342_37	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1546342_37	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_38	phrog_1194	137.3	4.99997e-41	N/A	unknown function
UniRef90	UHGV-1546342_38	UniRef90_A0A0P0N9J5	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-1546342_38	1123304.AQYA01000037_gene234	179.0	0	N/A	N/A
Pfam	UHGV-1546342_38	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1546342_38	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_39	phrog_9680	566.3	0	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1546342_39	UniRef90_A0A0T7K7E9	606.0	0	PblB	N/A
eggNOG-mapper	UHGV-1546342_39	1289601.M1PSK1_9CAUD	461.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
KOfam	UHGV-1546342_40	K06823	57.8	5.5e-17	COL18A; collagen type XVIII alpha	N/A
PHROG	UHGV-1546342_40	phrog_6320	79.0	4.9e-23	tail fiber protein	tail
eggNOG-mapper	UHGV-1546342_40	482234.SCAZ3_03785	65.5	0.00000000801	translation initiation factor activity	N/A
Pfam	UHGV-1546342_40	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
Pfam	UHGV-1546342_40	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1546342_40	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1546342_41	phrog_33657	40.4	0.000000000049	N/A	unknown function
structural_annotation	UHGV-1546342_41	PF21231,COG0806	N/A	N/A	N/A	N/A
PHROG	UHGV-1546342_42	phrog_7841	184.3	0	N/A	unknown function
UniRef90	UHGV-1546342_42	UniRef90_W1UY94	254.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1546342_42	768726.HMPREF9178_1052	145.0	1.24e-33	N/A	N/A
Pfam	UHGV-1546342_42	PF07902	N/A	N/A	gp58-like protein	Gp58
Pfam	UHGV-1546342_42	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-1546342_42	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1546342_42	PF13884	N/A	N/A	N/A	N/A