UHGV-1558247 (vOTU-036366)

Viral Genome: UHGV-1558247

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1558247
vOTU ID	vOTU-036366
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0066835
Associated BioSample	SAMEA2042011
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.06
Jumbo phage	No

Genome content
Genome length (bp)	10,989
GC content	52.63%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	17
CDS density	91%
Average CDS length (bps)	588.00
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1558247_1	K14059	291.9	0	int; integrase	N/A
PHROG	UHGV-1558247_1	phrog_1	219.1	0	integrase	integration and excision
UniRef90	UHGV-1558247_1	UniRef90_UPI001C02FB7B	687.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1558247_1	877411.JMMA01000002_gene2540	384.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1558247_1	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1558247_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1558247_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1558247_1	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1558247_2	UniRef90_A0A3E2UJ26	112.0	7.54e-28	XRE family transcriptional regulator	N/A
Pfam	UHGV-1558247_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1558247_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1558247_3	UniRef90_UPI000994F32A	47.8	0.00000874	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1558247_3	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1558247_3	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1558247_3	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1558247_4	phrog_2113	48.3	0.00000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1558247_4	1298920.KI911353_gene2059	52.0	0.000000534	N/A	N/A
structural_annotation	UHGV-1558247_4	PF08279,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-1558247_5	phrog_8489	215.1	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1558247_5	UniRef90_UPI0018994D15	220.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-1558247_5	1507.HMPREF0262_00303	261.0	0	DnaD domain protein	N/A
COG	UHGV-1558247_5	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1558247_5	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1558247_6	K02315	160.8	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1558247_6	phrog_50	149.6	2.24208e-44	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1558247_6	UniRef90_UPI00195C3322	267.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1558247_6	1121344.JHZO01000004_gene1170	267.0	0	N/A	N/A
Pfam	UHGV-1558247_6	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1558247_6	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1558247_6	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1558247_6	PF01695,MF_01158,NF005992,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-1558247_8	K03091	56.4	7e-16	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-1558247_8	UniRef90_A0A1C5NSG8	140.0	5.3e-38	Sigma-70	N/A
eggNOG-mapper	UHGV-1558247_8	646529.Desaci_3037	73.2	0.000000000000764	Sigma-70, region 4	N/A
Pfam	UHGV-1558247_8	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-1558247_8	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1558247_8	COG0568	N/A	N/A	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	N/A
structural_annotation	UHGV-1558247_8	PF07638,MF_00959,NF006147,COG0568	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1558247_9	1009370.ALO_17461	69.7	0.000000000000129	N/A	N/A
PHROG	UHGV-1558247_14	phrog_11299	75.7	7.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-1558247_14	693746.OBV_18160	171.0	0	N/A	N/A
structural_annotation	UHGV-1558247_14	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1558247_15	phrog_706	113.3	2.1e-33	N/A	unknown function
UniRef90	UHGV-1558247_15	UniRef90_UPI001D069FB9	215.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1558247_15	693746.OBV_18170	199.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1558247_15	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1558247_15	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1558247_16	phrog_1535	87.7	1.9e-39	tail length tape measure protein	tail
UniRef90	UHGV-1558247_16	UniRef90_A0A810PX76	136.0	8.58e-30	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1558247_16	693746.OBV_18190	134.0	1.49e-29	domain protein	N/A
COG	UHGV-1558247_16	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1558247_16	PF05546,TIGR02559	N/A	N/A	N/A	N/A