UHGV-1687998 (vOTU-138379)

Viral Genome: UHGV-1687998

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1687998
vOTU ID	vOTU-138379
Representative Genome?	Yes
Source	MGV
Original genome ID	MGV-GENOME-0147574
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9459
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.93
Jumbo phage	No

Genome content
Genome length (bp)	20,179
GC content	41.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	22
CDS density	98%
Average CDS length (bps)	896.86
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1687998_2	phrog_9827	212.8	0	N/A	unknown function
UniRef90	UHGV-1687998_2	UniRef90_A0A0Z8KUQ7	535.0	0	N/A	N/A
eggNOG-mapper	UHGV-1687998_2	176090.SSIN_1589	1094.0	0	N/A	N/A
structural_annotation	UHGV-1687998_2	PF14280,PF16873,PF13281,NF038257	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1687998_3	585203.SMSK564_0519	207.0	0	N/A	N/A
KOfam	UHGV-1687998_4	K06400	355.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1687998_4	phrog_95	444.4	0	integrase	integration and excision
UniRef90	UHGV-1687998_4	UniRef90_A0A427ZV43	823.0	0	Transposon Tn3 resolvase	N/A
eggNOG-mapper	UHGV-1687998_4	888821.HMPREF9394_1028	832.0	0	LambdaSa04 family prophage resolvase	N/A
Pfam	UHGV-1687998_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1687998_4	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1687998_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1687998_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1687998_4	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1687998_5	K06400	316.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1687998_5	phrog_95	397.4	0	integrase	integration and excision
UniRef90	UHGV-1687998_5	UniRef90_F0I1M1	758.0	0	LambdaSa04 family prophage resolvase	N/A
eggNOG-mapper	UHGV-1687998_5	888821.HMPREF9394_1027	746.0	0	PFAM Resolvase domain	N/A
Pfam	UHGV-1687998_5	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1687998_5	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1687998_5	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1687998_5	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1687998_5	PF00239,PF07508,MF_00549,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1687998_6	K07273	188.1	0	acm; lysozyme	N/A
PHROG	UHGV-1687998_6	phrog_291	163.2	0	endolysin	lysis
UniRef90	UHGV-1687998_6	UniRef90_A0A4D6AST6	616.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-1687998_6	888821.HMPREF9394_1026	622.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1687998_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1687998_6	PF01476	N/A	N/A	LysM domain	LysM
NCBIFam	UHGV-1687998_6	TIGR02899.1	N/A	N/A	SafA/ExsA family spore coat assembly protein	N/A
COG	UHGV-1687998_6	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1687998_6	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_7	phrog_21233	105.4	2.5e-31	N/A	unknown function
UniRef90	UHGV-1687998_7	UniRef90_A0A4D6ANF2	239.0	0	Holin	N/A
eggNOG-mapper	UHGV-1687998_7	888821.HMPREF9394_1025	239.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1687998_7	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1687998_7	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1687998_7	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1687998_7	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_8	phrog_1164	191.1	0	N/A	unknown function
UniRef90	UHGV-1687998_8	UniRef90_A0A4F6TM58	146.0	1.60028e-42	N/A	N/A
eggNOG-mapper	UHGV-1687998_8	1214217.ALNF01000017_gene223	138.0	9.46998e-41	N/A	N/A
PHROG	UHGV-1687998_9	phrog_1137	102.1	2.4e-30	N/A	unknown function
UniRef90	UHGV-1687998_9	UniRef90_A0A4D6ALF3	53.9	0.0000000651	Glycerate kinase	N/A
eggNOG-mapper	UHGV-1687998_9	1214217.ALNF01000017_gene222	57.8	0.000000000331	N/A	N/A
PHROG	UHGV-1687998_10	phrog_1330	531.3	0	tail protein	tail
UniRef90	UHGV-1687998_10	UniRef90_UPI0008AE2FF4	819.0	0	gp58-like family protein	N/A
eggNOG-mapper	UHGV-1687998_10	888821.HMPREF9394_1022	1960.0	0	Phage minor structural protein	N/A
NCBIFam	UHGV-1687998_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1687998_10	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1687998_10	PF14594,PF00629,TIGR01665,NF033675,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_11	phrog_33	53.7	0.0000000000000054	distal tail protein Dit	tail
UniRef90	UHGV-1687998_11	UniRef90_UPI00195B2D0A	323.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1687998_11	1123314.AUIO01000016_gene850	325.0	0	N/A	N/A
structural_annotation	UHGV-1687998_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1687998_12	K10421	41.0	0.000000000011	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1687998_12	phrog_5755	447.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1687998_12	UniRef90_A0A0F2CJ83	1271.0	0	Chromosome partition protein Smc	N/A
eggNOG-mapper	UHGV-1687998_12	862971.SANR_1243	1337.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1687998_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1687998_12	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1687998_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1687998_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_13	phrog_3033	59.0	8.1e-17	N/A	unknown function
UniRef90	UHGV-1687998_13	UniRef90_A0A0C1HUU2	52.4	0.0000000377	N/A	N/A
eggNOG-mapper	UHGV-1687998_13	365048.Q0H231_9CAUD	47.4	0.000000637	N/A	N/A
PHROG	UHGV-1687998_14	phrog_709	144.2	4.2039e-43	N/A	unknown function
UniRef90	UHGV-1687998_14	UniRef90_F2BRF6	262.0	0	Prophage pi2 protein 40	N/A
eggNOG-mapper	UHGV-1687998_14	888821.HMPREF9394_1018	262.0	0	N/A	N/A
structural_annotation	UHGV-1687998_14	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_15	phrog_88	161.0	0	major tail protein	tail
UniRef90	UHGV-1687998_15	UniRef90_F0I6F1	381.0	0	Phi13 family prophage LambdaSa04	N/A
eggNOG-mapper	UHGV-1687998_15	888821.HMPREF9394_1017	379.0	0	phage tail protein	N/A
NCBIFam	UHGV-1687998_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1687998_15	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_16	phrog_78	51.2	0.000000000000027	tail terminator	connector
UniRef90	UHGV-1687998_16	UniRef90_F2BRF4	203.0	0	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-1687998_16	862971.SANR_1247	206.0	0	N/A	N/A
structural_annotation	UHGV-1687998_16	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_17	phrog_5	41.7	0.000000000031	tail completion or Neck1 protein	connector
UniRef90	UHGV-1687998_17	UniRef90_W1TVM3	141.0	3.42996e-41	Prophage pi2 protein 37	N/A
eggNOG-mapper	UHGV-1687998_17	888821.HMPREF9394_1015	219.0	0	N/A	N/A
Pfam	UHGV-1687998_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1687998_17	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_18	phrog_25	56.2	7e-16	head closure Hc1	connector
UniRef90	UHGV-1687998_18	UniRef90_F0I6E8	216.0	0	Prophage LambdaSa04, head-tail adaptor	N/A
eggNOG-mapper	UHGV-1687998_18	888821.HMPREF9394_1014	210.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-1687998_18	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-1687998_18	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1687998_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_19	phrog_40	61.7	1.1e-17	head-tail adaptor Ad1	connector
UniRef90	UHGV-1687998_19	UniRef90_I0S9F3	172.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1687998_19	888821.HMPREF9394_1013	177.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1687998_19	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-1687998_19	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1687998_19	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_20	phrog_10	354.5	0	major head protein	head and packaging
UniRef90	UHGV-1687998_20	UniRef90_K0ZUU4	761.0	0	Phage prohead protease	N/A
eggNOG-mapper	UHGV-1687998_20	888821.HMPREF9394_1012	759.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1687998_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1687998_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1687998_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1687998_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1687998_21	K01358	145.3	5.60519e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1687998_21	phrog_94	250.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1687998_21	UniRef90_X8HAC6	437.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1687998_21	888821.HMPREF9394_1011	438.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1687998_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1687998_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1687998_21	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1687998_22	phrog_12	409.6	0	portal protein	head and packaging
UniRef90	UHGV-1687998_22	UniRef90_A0A4D6AQD8	852.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1687998_22	862971.SANR_1253	848.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1687998_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1687998_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1687998_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1687998_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A