UHGV-1851358 (vOTU-140437)

Viral Genome: UHGV-1851358

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1851358
vOTU ID	vOTU-140437
Representative Genome?	Yes
Source	GFD
Original genome ID	GFD_14.1_NODE_332_length_35473_cov_7.517364
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	50.15 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.62
Jumbo phage	No

Genome content
Genome length (bp)	35,473
GC content	44.81%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	91%
Average CDS length (bps)	609.34
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1851358_1	K15913	50.4	0.000000000000044	pglD; UDP-N-acetylbacillosamine N-acetyltransferase [EC:2.3.1.203]	N/A
eggNOG-mapper	UHGV-1851358_1	586413.CCDL010000001_gene1148	59.3	0.000000000288	Bacterial transferase hexapeptide (six repeats)	N/A
COG	UHGV-1851358_1	COG0110	N/A	N/A	Acetyltransferase, isoleucine patch superfamily	N/A
KOfam	UHGV-1851358_2	K01356	145.9	4.90454e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1851358_2	phrog_4	139.0	3.89995e-41	transcriptional repressor	transcription regulation
UniRef90	UHGV-1851358_2	UniRef90_A0A3D1VDF3	224.0	0	LexA family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1851358_2	428125.CLOLEP_01832	209.0	0	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1851358_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1851358_2	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1851358_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1851358_2	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1851358_3	K02342	161.0	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1851358_3	phrog_192	150.3	7.00649e-45	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1851358_3	UniRef90_A0A839K0X1	306.0	0	3'-5' exoribonuclease	N/A
eggNOG-mapper	UHGV-1851358_3	927704.SELR_11040	261.0	0	BRCA1 C Terminus (BRCT) domain	N/A
PADLOC	UHGV-1851358_3	cd06127	114.1	2.4e-34	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1851358_3	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-1851358_3	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-1851358_3	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-1851358_3	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-1851358_3	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-1851358_4	K14059	296.3	0	int; integrase	N/A
PHROG	UHGV-1851358_4	phrog_1	247.8	0	integrase	integration and excision
UniRef90	UHGV-1851358_4	UniRef90_UPI0001E2C286	234.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1851358_4	509191.AEDB02000075_gene2812	234.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1851358_4	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1851358_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1851358_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1851358_4	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1851358_5	K06400	267.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1851358_5	phrog_95	275.5	0	integrase	integration and excision
UniRef90	UHGV-1851358_5	UniRef90_UPI000681192F	348.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1851358_5	1410668.JNKC01000014_gene2480	184.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1851358_5	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1851358_5	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1851358_5	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1851358_5	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1851358_8	PF07878,NF041793,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_9	phrog_1758	157.9	0	acetyltransferase	other
UniRef90	UHGV-1851358_9	UniRef90_A0A7G5N3M6	263.0	0	N-acetyltransferase	N/A
eggNOG-mapper	UHGV-1851358_9	642492.Clole_1882	255.0	0	acetyltransferase	N/A
COG	UHGV-1851358_9	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-1851358_9	PF13673,MF_02210,NF000360,COG2153	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_10	phrog_3291	82.3	4.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-1851358_10	272563.CD630_09390	64.3	0.000000000000357	N/A	N/A
PHROG	UHGV-1851358_11	phrog_59	133.5	9.2e-40	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1851358_11	UniRef90_UPI000EB78D1E	131.0	1.74e-35	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1851358_11	1206110.L0P6F5_9CAUD	126.0	6.76e-34	sequence-specific DNA binding transcription factor activity	N/A
PADLOC	UHGV-1851358_11	HEase_00016	60.7	9.8e-18	homing endonuclease	RM
Pfam	UHGV-1851358_11	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1851358_11	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1851358_11	PF07463	N/A	N/A	N/A	N/A
KOfam	UHGV-1851358_12	K13731	96.8	2.4e-28	inlB; internalin B	N/A
PHROG	UHGV-1851358_12	phrog_2338	128.7	6.1e-38	endolysin	lysis
UniRef90	UHGV-1851358_12	UniRef90_A0A0A2TI27	192.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1851358_12	1321778.HMPREF1982_04708	180.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-1851358_12	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1851358_12	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1851358_12	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_13	phrog_1129	85.1	4.5e-25	holin	lysis
UniRef90	UHGV-1851358_13	UniRef90_UPI001C124A7D	117.0	6.13e-32	phage holin family protein	N/A
eggNOG-mapper	UHGV-1851358_13	556261.HMPREF0240_01266	94.4	9e-24	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1851358_13	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1851358_13	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_16	phrog_19695	108.9	3.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-1851358_16	537013.CLOSTMETH_03776	207.0	0	N/A	N/A
KOfam	UHGV-1851358_17	K07218	43.4	0.0000000000025	nosD; nitrous oxidase accessory protein	N/A
Pfam	UHGV-1851358_17	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-1851358_17	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_19	phrog_538	198.6	0	minor tail protein	tail
UniRef90	UHGV-1851358_19	UniRef90_UPI001E488613	157.0	1.88993e-41	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1851358_19	634956.Geoth_0803	139.0	6.62e-35	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-1851358_19	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1851358_19	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_20	phrog_33	72.9	8e-21	distal tail protein Dit	tail
UniRef90	UHGV-1851358_20	UniRef90_V9GJ34	90.1	2.07e-17	Tail protein, putative	N/A
eggNOG-mapper	UHGV-1851358_20	1234664.AMRO01000024_gene1818	59.7	0.000000181	Phage tail protein	N/A
Pfam	UHGV-1851358_20	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-1851358_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1851358_20	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_21	phrog_9959	195.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1851358_21	755731.Clo1100_1173	303.0	0	tape measure	N/A
Pfam	UHGV-1851358_21	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1851358_21	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1851358_21	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1851358_24	phrog_88	135.1	4.3e-40	major tail protein	tail
UniRef90	UHGV-1851358_24	UniRef90_A0A239AJE2	130.0	9.95e-35	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1851358_24	927704.SELR_11340	90.1	7.4e-20	N/A	N/A
Pfam	UHGV-1851358_24	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-1851358_24	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1851358_24	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1851358_25	1031288.AXAA01000048_gene772	52.0	0.00000106	N/A	N/A
Pfam	UHGV-1851358_25	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1851358_25	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_26	phrog_556	41.6	0.000000000021	minor head protein	head and packaging
UniRef90	UHGV-1851358_26	UniRef90_A0A2R4N3B8	75.5	0.00000000000000265	Bacteriophage HK97-gp10, putative tail-component	N/A
eggNOG-mapper	UHGV-1851358_26	1121926.AXWO01000004_gene1155	78.6	2.63e-17	N/A	N/A
structural_annotation	UHGV-1851358_26	PF11114,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_27	phrog_581	93.9	1.8e-27	minor head protein	head and packaging
UniRef90	UHGV-1851358_27	UniRef90_A0A1Q2Z4B3	64.3	0.00000000152	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1851358_27	1391647.AVSV01000003_gene1804	82.8	5.63e-16	Phage minor capsid protein 2	N/A
Pfam	UHGV-1851358_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1851358_27	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_28	phrog_793	46.5	0.00000000000071	head-tail adaptor	connector
structural_annotation	UHGV-1851358_28	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
Pfam	UHGV-1851358_29	PF20557	N/A	N/A	Putative DnaT-like ssDNA binding protein	DnaT_2
PHROG	UHGV-1851358_30	phrog_247	283.1	0	major head protein	head and packaging
UniRef90	UHGV-1851358_30	UniRef90_UPI000A1C9CC1	525.0	0	coat protein	N/A
eggNOG-mapper	UHGV-1851358_30	903814.ELI_3208	453.0	0	N/A	N/A
Pfam	UHGV-1851358_30	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-1851358_30	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_31	phrog_194	77.1	2.1e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-1851358_31	UniRef90_B0MB52	109.0	2.85e-26	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1851358_31	411490.ANACAC_00778	109.0	4.79e-27	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1851358_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1851358_31	PF06810,MF_02110	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1851358_33	235909.GK2142	49.3	0.00000267	N/A	N/A
PHROG	UHGV-1851358_34	phrog_581	154.3	1.4013e-45	minor head protein	head and packaging
UniRef90	UHGV-1851358_34	UniRef90_A0A1I0IDA4	134.0	3.44e-32	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1851358_34	1303692.SFUL_5519	124.0	2.76e-28	Phage minor capsid protein 2	N/A
Pfam	UHGV-1851358_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
PHROG	UHGV-1851358_35	phrog_533	98.1	6.9e-29	portal protein	head and packaging
UniRef90	UHGV-1851358_35	UniRef90_A0A6A7K8Y2	276.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1851358_35	86416.Clopa_3381	274.0	0	PFAM Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1851358_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1851358_35	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1851358_36	K06909	407.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1851358_36	phrog_3717	157.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1851358_36	UniRef90_A0A1Y4LTF3	571.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1851358_36	411461.DORFOR_01162	478.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1851358_36	PF10685	N/A	N/A	Stress-induced bacterial acidophilic repeat motif	KGG
Pfam	UHGV-1851358_36	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1851358_36	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1851358_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1851358_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1851358_36	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_37	phrog_36	67.2	3.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1851358_37	UniRef90_A0A2K9P072	89.7	2.52e-20	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1851358_37	1321784.HMPREF1987_01063	72.8	0.0000000000000163	N/A	N/A
structural_annotation	UHGV-1851358_37	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_39	phrog_419	106.6	2.4e-31	N/A	unknown function
UniRef90	UHGV-1851358_39	UniRef90_A0A0I7PZA1	94.7	2.49e-23	N/A	N/A
eggNOG-mapper	UHGV-1851358_39	1282664.H354_06646	95.9	1.5e-24	N/A	N/A
PHROG	UHGV-1851358_42	phrog_24517	78.7	5.4e-23	N/A	unknown function
structural_annotation	UHGV-1851358_42	TIGR03666	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1851358_44	1203606.HMPREF1526_00240	114.0	3.42e-32	N/A	N/A
structural_annotation	UHGV-1851358_44	PF18419	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_48	phrog_244	72.6	7.8e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1851358_48	768704.Desmer_4473	123.0	7.61e-35	N/A	N/A
structural_annotation	UHGV-1851358_48	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_49	phrog_9804	124.2	9.6e-37	N/A	unknown function
UniRef90	UHGV-1851358_49	UniRef90_A0A3D1LDS2	110.0	2.66e-27	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1851358_49	1499683.CCFF01000013_gene503	106.0	2.24e-26	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1851358_49	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1851358_49	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_50	phrog_2562	170.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1851358_50	UniRef90_B1C7J8	251.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1851358_50	445971.ANASTE_00700	251.0	0	N/A	N/A
Pfam	UHGV-1851358_50	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1851358_50	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1851358_50	PF14297	N/A	N/A	N/A	N/A
UniRef90	UHGV-1851358_51	UniRef90_A0A357NGS2	65.5	0.0000000000306	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-1851358_51	PF21715,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-1851358_52	K03111	131.5	1.1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1851358_52	phrog_44	138.2	5.70006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1851358_52	UniRef90_UPI001C1005D2	141.0	1.01e-40	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1851358_52	203119.Cthe_1350	126.0	1.61e-35	Single-strand binding protein family	N/A
Pfam	UHGV-1851358_52	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1851358_52	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1851358_52	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1851358_52	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1851358_52	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1851358_53	phrog_398	67.2	3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1851358_53	1400520.LFAB_09205	64.7	0.00000000000954	Putative HNHc nuclease	N/A
Pfam	UHGV-1851358_53	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6