UHGV-1853476 (vOTU-037979)

Viral Genome: UHGV-1853476

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1853476
vOTU ID	vOTU-037979
Representative Genome?	Yes
Source	GFD
Original genome ID	GFD_14.1_NODE_534_length_26795_cov_7.818025
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9702
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.87
Jumbo phage	No

Genome content
Genome length (bp)	26,795
GC content	45.09%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	92%
Average CDS length (bps)	537.59
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1853476_1	999413.HMPREF1094_01998	84.0	5.53e-18	N/A	N/A
PHROG	UHGV-1853476_2	phrog_1067	338.4	0	minor head protein	head and packaging
UniRef90	UHGV-1853476_2	UniRef90_A0A3E3AEF9	569.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1853476_2	1232446.BAIE02000002_gene836	569.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1853476_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1853476_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1853476_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1853476_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_3	phrog_33	77.1	4e-22	distal tail protein Dit	tail
UniRef90	UHGV-1853476_3	UniRef90_A0A3E3EI44	224.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1853476_3	999413.HMPREF1094_02000	244.0	0	phage tail	N/A
NCBIFam	UHGV-1853476_3	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1853476_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1853476_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1853476_4	K20478	46.6	0.000000000000065	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1853476_4	phrog_1533	523.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1853476_4	UniRef90_UPI00189C7468	400.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1853476_4	903814.ELI_1307	391.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1853476_4	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1853476_4	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1853476_4	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1853476_4	PF10145,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_6	phrog_709	43.0	1.6e-20	N/A	unknown function
UniRef90	UHGV-1853476_6	UniRef90_K6DJ01	63.5	0.000000000112	Prophage pi2 protein 40	N/A
eggNOG-mapper	UHGV-1853476_6	1121105.ATXL01000027_gene752	67.8	0.000000000000452	N/A	N/A
structural_annotation	UHGV-1853476_6	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_7	phrog_88	109.2	4e-32	major tail protein	tail
UniRef90	UHGV-1853476_7	UniRef90_A0A3E3EG64	284.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1853476_7	478749.BRYFOR_05589	147.0	4.47995e-42	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1853476_7	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1853476_7	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_8	phrog_5	40.7	0.000000000064	tail completion or Neck1 protein	connector
UniRef90	UHGV-1853476_8	UniRef90_A0A0D0SH91	85.9	4.61e-19	N/A	N/A
eggNOG-mapper	UHGV-1853476_8	1226322.HMPREF1545_00119	92.4	2.16e-22	N/A	N/A
structural_annotation	UHGV-1853476_8	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-1853476_9	UniRef90_U2SBX3	56.2	0.0000000261	HTH merR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1853476_9	476272.RUMHYD_01476	65.5	0.00000000000111	COG NOG18352 non supervised orthologous group	N/A
structural_annotation	UHGV-1853476_9	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1853476_10	610130.Closa_0746	77.8	7.65e-17	N/A	N/A
structural_annotation	UHGV-1853476_10	PF16467,MF_01457,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_11	phrog_749	64.6	1.4e-18	N/A	unknown function
UniRef90	UHGV-1853476_11	UniRef90_UPI0018CD5F53	53.9	0.000000331	phage head-tail connector protein	N/A
PHROG	UHGV-1853476_12	phrog_10	125.9	3.8e-37	major head protein	head and packaging
UniRef90	UHGV-1853476_12	UniRef90_A0A3E3EGM4	545.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1853476_12	349161.Dred_2604	355.0	0	Phage capsid family	N/A
Pfam	UHGV-1853476_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1853476_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1853476_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1853476_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1853476_13	K01358	151.6	7.00649e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1853476_13	phrog_94	231.3	0	head maturation protease	head and packaging
UniRef90	UHGV-1853476_13	UniRef90_A0A3E3EG77	331.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1853476_13	1232452.BAIB02000007_gene1626	209.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1853476_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1853476_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1853476_13	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_14	phrog_12	146.5	1.59748e-43	portal protein	head and packaging
UniRef90	UHGV-1853476_14	UniRef90_A0A3E3EI59	503.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1853476_14	349161.Dred_2606	347.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1853476_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1853476_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1853476_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1853476_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_15	phrog_9	238.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1853476_15	UniRef90_A0A3E3EH16	750.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1853476_15	610130.Closa_0741	642.0	0	Phage Terminase	N/A
Pfam	UHGV-1853476_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1853476_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1853476_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1853476_15	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_16	phrog_5110	90.6	1.1e-26	terminase small subunit	head and packaging
UniRef90	UHGV-1853476_16	UniRef90_UPI001D06BD2A	70.9	0.000000000000169	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1853476_16	1265845.PWEIH_00610	50.1	0.00000295	Phage terminase, small subunit	N/A
Pfam	UHGV-1853476_16	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1853476_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_18	phrog_119	77.6	1.9e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1853476_18	UniRef90_A0A352P165	113.0	3.56e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1853476_18	610130.Closa_0739	106.0	3.23e-28	HNH nucleases	N/A
Pfam	UHGV-1853476_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1853476_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1853476_20	phrog_36	49.4	0.000000000000097	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1853476_20	PF04545,PF01920,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_21	phrog_474	115.6	6.6e-34	phosphofructokinase	other
UniRef90	UHGV-1853476_21	UniRef90_A0A316NLA2	108.0	5.65e-29	N/A	N/A
eggNOG-mapper	UHGV-1853476_21	665956.HMPREF1032_00639	98.2	1.3e-25	N/A	N/A
Pfam	UHGV-1853476_21	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1853476_21	PF19905	N/A	N/A	N/A	N/A
UniRef90	UHGV-1853476_22	UniRef90_K9D562	53.9	0.000000039	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1853476_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
Pfam	UHGV-1853476_25	PF09652	N/A	N/A	Putative CRISPR-associated protein (Cas_VVA1548)	Cas_VVA1548
KOfam	UHGV-1853476_26	K02086	114.2	1.2e-33	dnaD; DNA replication protein	N/A
PHROG	UHGV-1853476_26	phrog_186	94.5	1.3e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1853476_26	883112.HMPREF9707_00662	77.8	0.0000000000000461	Replication initiation and membrane attachment	N/A
Pfam	UHGV-1853476_26	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1853476_26	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1853476_26	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1853476_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1853476_26	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-1853476_27	K04763	172.5	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1853476_27	phrog_1	127.9	1.1e-37	integrase	integration and excision
UniRef90	UHGV-1853476_27	UniRef90_A0A1M7NLW3	282.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-1853476_27	1232449.BAHV02000016_gene1840	271.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1853476_27	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-1853476_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1853476_27	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1853476_27	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_29	phrog_2164	87.1	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-1853476_29	1260356.D920_00267	95.9	1.39e-23	N/A	N/A
eggNOG-mapper	UHGV-1853476_32	1120978.KB894087_gene426	59.7	0.00000000137	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1853476_32	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-1853476_33	phrog_2245	87.8	1.3e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1853476_33	UniRef90_A0A4U9RLZ8	54.3	0.00000019	N/A	N/A
eggNOG-mapper	UHGV-1853476_33	428127.EUBDOL_01514	78.2	1.55e-17	N/A	N/A
PHROG	UHGV-1853476_34	phrog_1029	176.6	0	N/A	unknown function
UniRef90	UHGV-1853476_34	UniRef90_A0A0U3EGQ0	113.0	5.5e-27	Phage-related protein	N/A
eggNOG-mapper	UHGV-1853476_34	1232449.BAHV02000016_gene1838	177.0	0	N/A	N/A
structural_annotation	UHGV-1853476_34	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-1853476_35	phrog_997	40.2	0.000000000063	replication terminator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1853476_35	756499.Desde_1051	53.5	0.000000295	N/A	N/A
structural_annotation	UHGV-1853476_36	PF04314,NF041740,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-1853476_43	K22300	53.6	0.0000000000000055	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1853476_43	phrog_8	42.5	0.000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1853476_43	UniRef90_A0A7I8DHV1	125.0	1.64e-34	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1853476_43	903814.ELI_3237	120.0	2.37e-33	sequence-specific DNA binding	N/A
Pfam	UHGV-1853476_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1853476_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1853476_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1853476_46	K14059	181.9	0	int; integrase	N/A
PHROG	UHGV-1853476_46	phrog_1	166.2	0	integrase	integration and excision
UniRef90	UHGV-1853476_46	UniRef90_UPI0018AA7879	307.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1853476_46	908340.HMPREF9406_2610	238.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1853476_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
Pfam	UHGV-1853476_46	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
COG	UHGV-1853476_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1853476_46	PF00589,PF13102,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A