UHGV-1853687 (vOTU-026880)

Viral Genome: UHGV-1853687

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1853687
vOTU ID	vOTU-026880
Representative Genome?	Yes
Source	DEVoC
Original genome ID	ViralSequence585
Associated BioSample	SAMN18819180
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.42 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.56
Jumbo phage	No

Genome content
Genome length (bp)	35,901
GC content	39.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	88%
Average CDS length (bps)	457.39
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1853687_1	K19304	108.1	1.1e-31	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1853687_1	phrog_7767	75.7	5.4e-22	metallo-endopeptidase	other
UniRef90	UHGV-1853687_1	UniRef90_R7BGI7	375.0	0	LysM domain/M23/M37 peptidase domain protein	N/A
eggNOG-mapper	UHGV-1853687_1	717606.PaecuDRAFT_2260	100.0	2.34e-21	membrane	N/A
Pfam	UHGV-1853687_1	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-1853687_1	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-1853687_1	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1853687_1	PF01551,PF05036,MF_02022,NF040883,NF008641,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_2	phrog_1194	70.5	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1853687_2	483218.BACPEC_01144	76.6	5.29e-16	N/A	N/A
Pfam	UHGV-1853687_2	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1853687_2	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_3	phrog_18190	516.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1853687_3	1235790.C805_00089	364.0	0	N/A	N/A
Pfam	UHGV-1853687_3	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1853687_3	PF05113,PF13884,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-1853687_6	K04763	171.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1853687_6	phrog_1	163.8	0	integrase	integration and excision
UniRef90	UHGV-1853687_6	UniRef90_UPI00084915C6	255.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1853687_6	610130.Closa_0719	203.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1853687_6	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1853687_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1853687_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1853687_6	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1853687_8	K18830	69.1	1.9e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1853687_8	phrog_4	56.9	5e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-1853687_8	UniRef90_R7BIH5	232.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1853687_8	445972.ANACOL_03315	130.0	1.29e-37	N/A	N/A
Pfam	UHGV-1853687_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1853687_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1853687_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_9	phrog_2657	159.5	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1853687_9	UniRef90_R7BGJ4	436.0	0	Phage regulatory protein rha family	N/A
eggNOG-mapper	UHGV-1853687_9	411459.RUMOBE_01391	289.0	0	N/A	N/A
Pfam	UHGV-1853687_9	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1853687_9	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1853687_9	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1853687_9	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1853687_12	PF18963	N/A	N/A	N/A	N/A
KOfam	UHGV-1853687_13	K07741	196.0	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1853687_13	phrog_63	172.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1853687_13	UniRef90_A0A6N2U2M0	365.0	0	Phage antirepressor protein KilAC domain protein	N/A
eggNOG-mapper	UHGV-1853687_13	658655.HMPREF0988_02592	276.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1853687_13	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1853687_13	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1853687_13	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1853687_13	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_14	phrog_4433	198.7	0	N/A	unknown function
UniRef90	UHGV-1853687_14	UniRef90_A0A1C6I166	172.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-1853687_14	665950.HMPREF1025_01373	163.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1853687_14	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-1853687_15	phrog_22529	202.4	0	N/A	unknown function
UniRef90	UHGV-1853687_15	UniRef90_R7BGN0	252.0	0	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-1853687_15	877420.ATVW01000029_gene1358	108.0	6.1e-26	3D domain	N/A
Pfam	UHGV-1853687_15	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1853687_15	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1853687_15	PF06725,MF_02071,TIGR00413,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_16	phrog_4292	67.9	1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1853687_16	411460.RUMTOR_01375	56.6	0.00000000039	N/A	N/A
KOfam	UHGV-1853687_18	K19171	93.3	2.7e-27	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1853687_18	phrog_77	188.8	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1853687_18	UniRef90_R7BHE4	1102.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1853687_18	1298920.KI911353_gene2731	320.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1853687_18	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1853687_18	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1853687_18	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_19	phrog_9958	102.3	4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1853687_19	1297617.JPJD01000020_gene312	60.5	0.000000013	N/A	N/A
Pfam	UHGV-1853687_19	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1853687_19	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_20	phrog_9958	169.0	0	N/A	unknown function
UniRef90	UHGV-1853687_20	UniRef90_A0A4Q5C6P1	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-1853687_20	658655.HMPREF0988_00873	197.0	0	N/A	N/A
Pfam	UHGV-1853687_20	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1853687_20	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_21	phrog_2185	275.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1853687_21	UniRef90_UPI001BC46C39	464.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1853687_21	658655.HMPREF0988_00886	368.0	0	N/A	N/A
Pfam	UHGV-1853687_21	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1853687_21	NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1853687_22	K06940	60.6	3.3e-17	N/A	N/A
PHROG	UHGV-1853687_22	phrog_32498	141.3	3.50044e-42	N/A	unknown function
UniRef90	UHGV-1853687_22	UniRef90_A0A173SAY4	133.0	1.14e-37	Flagellin N-methylase	N/A
eggNOG-mapper	UHGV-1853687_22	397290.C810_01479	134.0	1e-38	Putative zinc- or iron-chelating domain	N/A
Pfam	UHGV-1853687_22	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
PHROG	UHGV-1853687_23	phrog_25456	121.7	3e-36	N/A	unknown function
KOfam	UHGV-1853687_25	K06167	50.9	0.000000000000022	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1853687_25	phrog_392	176.1	0	metal-dependent hydrolase	other
UniRef90	UHGV-1853687_25	UniRef90_A0A412RQX2	368.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1853687_25	748727.CLJU_c31620	152.0	7.46892e-43	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1853687_25	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-1853687_25	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-1853687_25	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1853687_25	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_26	phrog_7711	149.2	1.12104e-44	N/A	unknown function
UniRef90	UHGV-1853687_26	UniRef90_UPI001C38CAD2	112.0	1.67e-28	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1853687_26	1226322.HMPREF1545_00031	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-1853687_29	397290.C810_01492	90.5	1.62e-20	N/A	N/A
KOfam	UHGV-1853687_31	K03111	130.2	2.7e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1853687_31	phrog_44	133.4	1.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1853687_31	UniRef90_R7BIL2	241.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1853687_31	511680.BUTYVIB_00906	180.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1853687_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1853687_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1853687_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1853687_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1853687_31	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1853687_33	PF14282	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1853687_37	397290.C810_05186	85.5	1.8e-19	N/A	N/A
PHROG	UHGV-1853687_39	phrog_3490	115.7	2.9e-34	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1853687_39	UniRef90_A0A843HS26	162.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1853687_39	1232453.BAIF02000057_gene1143	134.0	2.73e-37	N/A	N/A
Pfam	UHGV-1853687_39	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1853687_39	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_40	phrog_1384	130.3	1.3e-38	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-1853687_40	428125.CLOLEP_01816	167.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-1853687_40	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_43	phrog_6724	89.0	5.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1853687_43	1463936.JOJI01000043_gene7935	64.3	0.00000000000472	N/A	N/A
KOfam	UHGV-1853687_45	K00571	101.8	9.2e-30	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1853687_45	phrog_23224	195.0	0	DNA methyltransferase	other
UniRef90	UHGV-1853687_45	UniRef90_UPI000462F5E4	355.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1853687_45	1345695.CLSA_c30050	248.0	0	DNA methylase	N/A
PADLOC	UHGV-1853687_45	MTase_II_00157	68.7	5.5e-24	Type II methyltransferase	RM
Pfam	UHGV-1853687_45	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1853687_45	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1853687_45	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_47	phrog_8489	185.8	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1853687_47	UniRef90_UPI000AB3B1F8	149.0	3.82975e-42	replisome organizer	N/A
eggNOG-mapper	UHGV-1853687_47	1415774.U728_867	142.0	1.71e-39	DnaD domain protein	N/A
COG	UHGV-1853687_47	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-1853687_50	K22299	40.7	0.000000000047	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1853687_50	phrog_8	45.9	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-1853687_50	UniRef90_A0A1M6LJH6	49.7	0.00000507	Helix-turn-helix	N/A
Pfam	UHGV-1853687_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1853687_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1853687_51	phrog_17690	108.2	4.6e-32	N/A	unknown function
UniRef90	UHGV-1853687_51	UniRef90_A0A6L5XWF4	95.9	5.72e-23	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-1853687_51	33035.JPJF01000123_gene2433	98.2	1.26e-24	N/A	N/A
KOfam	UHGV-1853687_52	K02479	42.0	0.000000000014	K02479; two-component system, NarL family, response regulator	N/A
PHROG	UHGV-1853687_52	phrog_16129	65.6	3.3e-19	excisionase	integration and excision
UniRef90	UHGV-1853687_52	UniRef90_A0A412RR26	156.0	0	HTH luxR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1853687_52	658088.HMPREF0987_01415	88.2	2.09e-21	Excisionase from transposon Tn916	N/A
Pfam	UHGV-1853687_52	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
Pfam	UHGV-1853687_52	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
NCBIFam	UHGV-1853687_52	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1853687_52	PF09035,PF00196,MF_00674,NF033787,NF008895,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1853687_53	K14059	253.3	0	int; integrase	N/A
PHROG	UHGV-1853687_53	phrog_1	212.9	0	integrase	integration and excision
UniRef90	UHGV-1853687_53	UniRef90_A0A292SPJ9	584.0	0	Site-specific integrase (Fragment)	N/A
eggNOG-mapper	UHGV-1853687_53	742733.HMPREF9469_03088	373.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1853687_53	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1853687_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1853687_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1853687_53	PF00589,PF14659,PF02920,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1853687_55	phrog_21718	53.5	0.0000000000000038	N/A	unknown function
eggNOG-mapper	UHGV-1853687_55	658655.HMPREF0988_00919	112.0	3.52e-29	N/A	N/A
structural_annotation	UHGV-1853687_55	NF033819	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1853687_56	658655.HMPREF0988_00918	79.7	9.42e-19	N/A	N/A
PHROG	UHGV-1853687_57	phrog_16490	178.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1853687_57	397290.C810_01328	198.0	0	N/A	N/A
PHROG	UHGV-1853687_59	phrog_20016	224.7	0	N/A	unknown function
UniRef90	UHGV-1853687_59	UniRef90_A0A285PT46	161.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1853687_59	397290.C810_05214	226.0	0	N/A	N/A
structural_annotation	UHGV-1853687_59	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1853687_60	658655.HMPREF0988_00915	67.0	0.000000000172	N/A	N/A
PHROG	UHGV-1853687_61	phrog_1233	44.6	0.0000000000025	N/A	unknown function
eggNOG-mapper	UHGV-1853687_61	658655.HMPREF0988_00914	115.0	4.61e-32	N/A	N/A
structural_annotation	UHGV-1853687_61	PF13058	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1853687_64	1235800.C819_00521	58.2	0.00000000419	N/A	N/A
structural_annotation	UHGV-1853687_64	PF09392,NF011854	N/A	N/A	N/A	N/A
UniRef90	UHGV-1853687_67	UniRef90_A0A3R6B3D9	126.0	2.39e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1853687_67	394503.Ccel_3173	53.1	0.0000000259	N/A	N/A
Pfam	UHGV-1853687_67	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1853687_67	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1853687_69	397290.C810_01353	64.3	0.0000000000049	N/A	N/A