UHGV-1862275 (vOTU-170235)

Viral Genome: UHGV-1862275

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1862275
vOTU ID	vOTU-170235
Representative Genome?	Yes
Source	DEVoC
Original genome ID	ViralSequence568
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.83 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.45
Jumbo phage	No

Genome content
Genome length (bp)	36,480
GC content	39.39%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	89%
Average CDS length (bps)	580.45
Total tRNA genes	2
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.83)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1862275_3	K19171	80.9	1.3e-23	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1862275_3	phrog_77	163.6	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1862275_3	UniRef90_A0A412RQV0	944.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1862275_3	397290.C810_01461	377.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1862275_3	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1862275_3	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1862275_5	742765.HMPREF9457_03017	104.0	1.25e-24	peptidase	N/A
COG	UHGV-1862275_5	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
PHROG	UHGV-1862275_7	phrog_463	205.7	0	anti-repressor	transcription regulation
UniRef90	UHGV-1862275_7	UniRef90_A0A412RQX1	354.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-1862275_7	596329.HMPREF0631_1352	202.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-1862275_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1862275_7	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1862275_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1862275_7	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-1862275_10	UniRef90_A0A395X814	125.0	1.58e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1862275_10	1121289.JHVL01000079_gene1187	60.1	0.0000000000336	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1862275_10	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1862275_10	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1862275_11	K22300	75.2	1.3e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1862275_11	phrog_8	59.0	1.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1862275_11	UniRef90_A0A395X7H2	112.0	3.42e-30	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1862275_11	397288.C806_00131	89.0	5.55e-21	Transcriptional	N/A
Pfam	UHGV-1862275_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1862275_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1862275_11	PF01381,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1862275_12	UniRef90_A0A8D9UIV6	68.2	0.00000000000156	RNAse domain protein	N/A
UniRef90	UHGV-1862275_15	UniRef90_A0A349YRM6	58.5	0.000000000165	XkdX family protein	N/A
eggNOG-mapper	UHGV-1862275_15	411468.CLOSCI_01507	50.1	0.0000000633	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1862275_15	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1862275_15	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_16	phrog_20201	53.3	0.0000000000000055	N/A	unknown function
KOfam	UHGV-1862275_17	K00986	118.0	1e-34	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1862275_17	phrog_1423	190.4	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1862275_17	UniRef90_G9RWP0	245.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1862275_17	665956.HMPREF1032_00691	245.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1862275_17	drt-UG17	95.4	8.6e-28	DRT	DRT
Pfam	UHGV-1862275_17	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1862275_17	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1862275_17	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_19	phrog_5302	319.6	0	tail protein	tail
UniRef90	UHGV-1862275_19	UniRef90_A0A345BPB9	261.0	0	Lectin	N/A
eggNOG-mapper	UHGV-1862275_19	428125.CLOLEP_01426	314.0	0	N/A	N/A
structural_annotation	UHGV-1862275_19	COG1262	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1862275_20	476272.RUMHYD_01994	67.4	0.0000000000709	N/A	N/A
Pfam	UHGV-1862275_20	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
PHROG	UHGV-1862275_21	phrog_6616	499.2	0	tail protein	tail
UniRef90	UHGV-1862275_21	UniRef90_A0A412RR71	997.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1862275_21	476272.RUMHYD_01992	354.0	0	N/A	N/A
structural_annotation	UHGV-1862275_21	PF05113,NF033848,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_22	phrog_1194	117.7	5.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-1862275_22	997830.HMPREF1124_0608	84.0	2.39e-19	N/A	N/A
Pfam	UHGV-1862275_22	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1862275_22	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_23	phrog_1535	202.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1862275_23	1232443.BAIA02000078_gene18	194.0	0	phage tail tape measure protein	N/A
COG	UHGV-1862275_23	COG1511	N/A	N/A	N/A	N/A
KOfam	UHGV-1862275_24	K07273	157.0	0	acm; lysozyme	N/A
PHROG	UHGV-1862275_24	phrog_291	131.8	6.3e-39	endolysin	lysis
UniRef90	UHGV-1862275_24	UniRef90_A0A174GRH8	577.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1862275_24	1235800.C819_00458	229.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1862275_24	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1862275_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1862275_24	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1862275_24	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
UniRef90	UHGV-1862275_27	UniRef90_R7BGF5	87.8	6.92e-19	Phage tail protein	N/A
structural_annotation	UHGV-1862275_27	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1862275_28	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1862275_29	1232453.BAIF02000058_gene1631	115.0	3.21e-30	N/A	N/A
AcrCatalog	UHGV-1862275_29	cluster_24841	146.0	0	NA	N/A
eggNOG-mapper	UHGV-1862275_30	1298920.KI911353_gene2656	61.2	0.000000000558	N/A	N/A
structural_annotation	UHGV-1862275_30	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_31	phrog_1129	76.6	2.1e-22	holin	lysis
UniRef90	UHGV-1862275_31	UniRef90_A0A412RR82	168.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1862275_31	411461.DORFOR_00721	87.4	1.62e-21	N/A	N/A
Pfam	UHGV-1862275_31	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1862275_31	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_32	phrog_4105	76.2	7.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1862275_32	411459.RUMOBE_00911	142.0	9.16449e-43	N/A	N/A
eggNOG-mapper	UHGV-1862275_33	397290.C810_01402	63.2	0.000000000035	N/A	N/A
UniRef90	UHGV-1862275_34	UniRef90_A0A8D9UIY7	59.7	0.000000000741	Rho termination factor	N/A
structural_annotation	UHGV-1862275_34	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_35	phrog_29	148.8	4.06377e-44	major head protein	head and packaging
UniRef90	UHGV-1862275_35	UniRef90_A0A412RQU1	654.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1862275_35	1296659.S5MNB6_9CAUD	172.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1862275_35	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1862275_35	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_36	phrog_909	79.1	4.2e-23	major head protein	head and packaging
UniRef90	UHGV-1862275_36	UniRef90_R7BGI8	190.0	0	Phage major capsid protein	N/A
UniRef90	UHGV-1862275_37	UniRef90_UPI000E41BB01	55.1	0.00000441	N/A	N/A
PHROG	UHGV-1862275_38	phrog_2662	54.5	0.0000000000000012	portal protein	head and packaging
UniRef90	UHGV-1862275_38	UniRef90_A0A412RR50	390.0	0	Phage_Mu_F domain-containing protein	N/A
COG	UHGV-1862275_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1862275_38	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_39	phrog_64	150.7	7.00649e-45	portal protein	head and packaging
UniRef90	UHGV-1862275_39	UniRef90_A0A412RQZ0	936.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1862275_39	1232453.BAIF02000058_gene1625	343.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1862275_39	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1862275_39	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1862275_40	UniRef90_A0A8D9UIR9	77.4	2.69e-17	RimK-related lysine biosynthesis protein	N/A
PHROG	UHGV-1862275_41	phrog_36	71.5	1.4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1862275_41	UniRef90_A0A6N7XL46	85.5	2.26e-18	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1862275_41	1123288.SOV_6c01520	77.8	2.69e-16	sigma factor activity	N/A
Pfam	UHGV-1862275_41	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1862275_41	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1862275_41	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_42	phrog_9529	81.2	1e-23	N/A	unknown function
UniRef90	UHGV-1862275_42	UniRef90_UPI000836A084	87.4	6.71e-18	N/A	N/A
eggNOG-mapper	UHGV-1862275_42	202752.JL53_03720	59.7	0.0000000452	N/A	N/A
Pfam	UHGV-1862275_42	PF04480	N/A	N/A	N/A	DUF559
COG	UHGV-1862275_42	COG2852	N/A	N/A	Very-short-patch-repair endonuclease	N/A
structural_annotation	UHGV-1862275_42	PF04480,NF007294,COG2852	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_43	phrog_38	140.6	9.99967e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1862275_43	UniRef90_A0A318EQM2	353.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1862275_43	1123263.AUKY01000015_gene1608	354.0	0	chromosome segregation	N/A
COG	UHGV-1862275_43	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1862275_43	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_44	phrog_2316	61.8	1.4e-17	N/A	unknown function
UniRef90	UHGV-1862275_44	UniRef90_A0A3E4YBW5	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-1862275_44	1280676.AUJO01000024_gene3262	68.2	0.0000000000000999	N/A	N/A
Pfam	UHGV-1862275_44	PF16475	N/A	N/A	N/A	DUF5052
structural_annotation	UHGV-1862275_44	PF16475,MF_00436,NF033216,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_45	phrog_1233	86.7	2.4e-25	N/A	unknown function
UniRef90	UHGV-1862275_45	UniRef90_UPI001C39EFB9	152.0	9.80909e-45	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-1862275_45	357809.Cphy_2967	99.0	1.5e-24	N/A	N/A
structural_annotation	UHGV-1862275_45	PF13058	N/A	N/A	N/A	N/A
UniRef90	UHGV-1862275_49	UniRef90_A0A8D9PGN8	65.9	0.00000000000181	Acetyl-coA carboxylase zinc finger domain protein	N/A
structural_annotation	UHGV-1862275_50	PF04466	N/A	N/A	N/A	N/A
UniRef90	UHGV-1862275_51	UniRef90_A0A8D9PGW1	57.8	0.00000000105	HTH psq-type domain-containing protein	N/A
structural_annotation	UHGV-1862275_51	PF05225,COG2886	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_52	phrog_589	46.6	0.00000000000059	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1862275_52	UniRef90_A0A8D9PGN5	286.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1862275_52	525378.HMPREF0793_1846	57.8	0.0000000977	endonuclease activity	N/A
Pfam	UHGV-1862275_52	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1862275_52	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1862275_52	PF01844	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1862275_53	1397699.JNIS01000001_gene2447	107.0	3.77e-24	Conserved phage C-terminus (Phg_2220_C)	N/A
structural_annotation	UHGV-1862275_53	PF07106,NF040642,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1862275_55	phrog_236	55.9	0.000000000000001	nucleotide kinase	other
UniRef90	UHGV-1862275_55	UniRef90_A0A412RQV8	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-1862275_55	1200557.JHWV01000001_gene285	70.1	0.00000000000153	N/A	N/A
Pfam	UHGV-1862275_55	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1862275_55	PF11753	N/A	N/A	N/A	N/A