UHGV-1863450 (vOTU-125364)

Viral Genome: UHGV-1863450

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1863450
vOTU ID	vOTU-125364
Representative Genome?	Yes
Source	DEVoC
Original genome ID	ViralSequence897
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.01 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.69
Jumbo phage	No

Genome content
Genome length (bp)	25,053
GC content	53.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	89%
Average CDS length (bps)	437.12
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1863450_1	K22300	45.2	0.0000000000018	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1863450_1	phrog_8	69.1	9.1e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1863450_1	UniRef90_A0A8D9PDC4	105.0	3.66e-28	Repressor protein	N/A
eggNOG-mapper	UHGV-1863450_1	1226322.HMPREF1545_00039	77.0	7.99e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-1863450_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1863450_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1863450_1	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1863450_3	552398.HMPREF0866_03131	50.8	0.0000000986	N/A	N/A
UniRef90	UHGV-1863450_5	UniRef90_A0A8D9PDT5	60.8	0.000000000582	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1863450_7	phrog_5781	66.2	5e-19	N/A	unknown function
UniRef90	UHGV-1863450_7	UniRef90_R5AT00	110.0	1.15e-29	Gp57	N/A
eggNOG-mapper	UHGV-1863450_7	630626.EBL_c22110	72.4	0.00000000000000191	N/A	N/A
Pfam	UHGV-1863450_7	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-1863450_7	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-1863450_7	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1863450_8	phrog_3136	134.0	4.79999e-40	N/A	unknown function
UniRef90	UHGV-1863450_8	UniRef90_UPI001CBCD733	131.0	1e-35	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1863450_8	693746.OBV_25380	58.9	0.0000000392	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1863450_8	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1863450_8	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1863450_9	phrog_38832	51.8	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1863450_9	445972.ANACOL_00165	55.8	0.000000327	N/A	N/A
PHROG	UHGV-1863450_11	phrog_27610	65.8	3.9e-19	N/A	unknown function
KOfam	UHGV-1863450_12	K00558	160.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1863450_12	phrog_116	190.9	0	DNA methyltransferase	other
UniRef90	UHGV-1863450_12	UniRef90_D4JYK0	382.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1863450_12	718252.FP2_16350	382.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1863450_12	oMTase_00004	214.1	0	orphan methyltransferase	RM
Pfam	UHGV-1863450_12	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1863450_12	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1863450_12	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
Pfam	UHGV-1863450_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1863450_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1863450_13	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-1863450_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1863450_14	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1863450_15	K23779	47.7	4.8e-27	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1863450_15	phrog_8	71.8	4e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1863450_15	UniRef90_A0A7X6YBU5	77.0	0.0000000000000329	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1863450_15	264732.Moth_1827	55.8	0.000000316	transcriptional regulator, XRE family	N/A
PADLOC	UHGV-1863450_15	retron_type_VI_hth_cluster2_1	41.6	4.3e-21	N/A	Retron
Pfam	UHGV-1863450_15	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-1863450_15	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1863450_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1863450_15	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-1863450_17	phrog_190	115.5	4e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863450_17	UniRef90_UPI001C0170D2	110.0	4.95e-28	N/A	N/A
eggNOG-mapper	UHGV-1863450_17	1226322.HMPREF1545_00295	124.0	4.02e-34	N/A	N/A
Pfam	UHGV-1863450_17	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1863450_17	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-1863450_18	K02315	175.9	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1863450_18	phrog_50	153.3	1.4013e-45	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863450_18	UniRef90_UPI00137A9A0F	277.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1863450_18	203119.Cthe_2467	261.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1863450_18	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1863450_18	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1863450_18	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1863450_18	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1863450_19	phrog_15768	110.9	2.5e-33	N/A	unknown function
UniRef90	UHGV-1863450_19	UniRef90_UPI001959E913	133.0	1.05e-35	N/A	N/A
eggNOG-mapper	UHGV-1863450_19	203119.Cthe_2466	101.0	7.58e-23	N/A	N/A
AcrCatalog	UHGV-1863450_19	cluster_38323	84.0	1.07e-21	NA	N/A
Pfam	UHGV-1863450_19	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1863450_19	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1863450_20	K03111	120.1	3e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1863450_20	phrog_44	116.1	3.5e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863450_20	UniRef90_R5SNS5	143.0	2.25006e-41	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1863450_20	1007096.BAGW01000007_gene1922	145.0	6.37591e-43	Single-strand binding protein family	N/A
Pfam	UHGV-1863450_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1863450_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1863450_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1863450_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1863450_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1863450_21	K07455	287.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1863450_21	phrog_148	272.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863450_21	UniRef90_U2SBP2	432.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-1863450_21	1226322.HMPREF1545_00015	432.0	0	RecT family	N/A
Pfam	UHGV-1863450_21	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1863450_21	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1863450_21	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1863450_21	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1863450_22	phrog_434	286.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863450_22	UniRef90_U2SK35	411.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1863450_22	1226322.HMPREF1545_00014	411.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1863450_22	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1863450_22	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1863450_22	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1863450_22	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1863450_24	phrog_22529	93.6	1.2e-27	N/A	unknown function
UniRef90	UHGV-1863450_24	UniRef90_A0A352RPR8	139.0	6.51e-39	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1863450_24	1298920.KI911353_gene568	112.0	3e-28	3D domain	N/A
Pfam	UHGV-1863450_24	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1863450_24	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1863450_24	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-1863450_25	K00571	117.9	1.2e-34	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1863450_25	phrog_67	101.3	4.9e-30	DNA methyltransferase	other
UniRef90	UHGV-1863450_25	UniRef90_A0A1C6E5W1	432.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1863450_25	35241.Q9XJE8_BPTU2	369.0	0	helicase activity	N/A
PADLOC	UHGV-1863450_25	MTase_II_00157	96.0	5.6e-28	Type II methyltransferase	RM
Pfam	UHGV-1863450_25	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-1863450_25	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1863450_28	phrog_2657	116.2	2.5e-34	transcriptional regulator	transcription regulation
UniRef90	UHGV-1863450_28	UniRef90_A0A3D0M0D9	172.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1863450_28	1203606.HMPREF1526_00304	182.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1863450_28	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
COG	UHGV-1863450_28	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1863450_28	NF033622,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-1863450_29	K22300	51.5	0.000000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1863450_29	phrog_8	40.8	0.000000000045	transcriptional regulator	transcription regulation
UniRef90	UHGV-1863450_29	UniRef90_A0A810PZI0	95.9	8.84e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1863450_29	1203606.HMPREF1526_00248	52.0	0.0000000386	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1863450_29	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1863450_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1863450_29	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1863450_30	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1863450_31	411902.CLOBOL_02557	185.0	0	N/A	N/A
UniRef90	UHGV-1863450_32	UniRef90_R5HRH2	52.0	0.00000698	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1863450_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1863450_32	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1863450_32	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1863450_33	K06400	275.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1863450_33	phrog_95	293.9	0	integrase	integration and excision
UniRef90	UHGV-1863450_33	UniRef90_A0A3A9I9T1	373.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1863450_33	903814.ELI_4654	295.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1863450_33	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1863450_33	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1863450_33	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1863450_33	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1863450_34	1232443.BAIA02000078_gene6	57.4	0.00000000459	N/A	N/A
PHROG	UHGV-1863450_35	phrog_28802	43.1	0.0000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1863450_35	476272.RUMHYD_01772	59.3	0.00000000512	N/A	N/A
PHROG	UHGV-1863450_36	phrog_20016	185.0	0	N/A	unknown function
UniRef90	UHGV-1863450_36	UniRef90_A0A285PT46	186.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1863450_36	397290.C810_05214	162.0	0	N/A	N/A
structural_annotation	UHGV-1863450_36	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1863450_37	phrog_3377	187.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863450_37	UniRef90_UPI001BFED834	137.0	2.07e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1863450_37	1460635.JCM19038_3433	157.0	1.4013e-45	N/A	N/A
PHROG	UHGV-1863450_38	phrog_16490	136.6	1.79997e-41	N/A	unknown function
eggNOG-mapper	UHGV-1863450_38	1408437.JNJN01000043_gene803	159.0	1.4013e-45	N/A	N/A
PHROG	UHGV-1863450_39	phrog_22984	80.6	1.5e-23	N/A	unknown function
PHROG	UHGV-1863450_40	phrog_21718	81.0	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-1863450_40	397290.C810_05210	60.8	0.00000000158	N/A	N/A
PHROG	UHGV-1863450_41	phrog_3754	112.7	2.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-1863450_41	1226322.HMPREF1545_00073	163.0	0	N/A	N/A
UniRef90	UHGV-1863450_44	UniRef90_A0A6N3FXW7	133.0	7.13e-39	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1863450_44	742738.HMPREF9460_04059	82.4	9.24e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1863450_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1863450_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1863450_44	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1863450_47	K17733	95.5	5.8e-28	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-1863450_47	phrog_6523	77.6	2.2e-22	endolysin	lysis
UniRef90	UHGV-1863450_47	UniRef90_R5RXG6	226.0	0	Serine-type D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-1863450_47	1519439.JPJG01000023_gene536	220.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-1863450_47	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-1863450_47	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-1863450_47	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-1863450_48	phrog_13256	60.9	1.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-1863450_48	1226322.HMPREF1545_00166	71.6	0.00000000000000157	N/A	N/A
PHROG	UHGV-1863450_50	phrog_937	44.8	0.0000000000024	hemolysin	other
eggNOG-mapper	UHGV-1863450_50	1519439.JPJG01000023_gene533	70.9	0.0000000000000109	N/A	N/A
PHROG	UHGV-1863450_51	phrog_27545	143.5	9.5008e-43	N/A	unknown function
UniRef90	UHGV-1863450_51	UniRef90_A0A2V2GQB6	150.0	1.54143e-44	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1863450_51	1519439.JPJG01000060_gene1895	145.0	1.41994e-41	N/A	N/A
Pfam	UHGV-1863450_51	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12