UHGV-1864282 (vOTU-058721)

Viral Genome: UHGV-1864282

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1864282
vOTU ID	vOTU-058721
Representative Genome?	Yes
Source	DEVoC
Original genome ID	ViralSequence448
Associated BioSample	SAMN18819080
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9826
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.25
Jumbo phage	No

Genome content
Genome length (bp)	41,011
GC content	53.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	92%
Average CDS length (bps)	539.44
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1864282_1	phrog_13879	195.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1864282_1	1122919.KB905559_gene1344	165.0	2.25049e-42	N/A	N/A
structural_annotation	UHGV-1864282_1	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864282_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_3	phrog_6900	272.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1864282_3	1123312.KB904569_gene357	321.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1864282_3	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1864282_3	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_5	phrog_18646	59.4	7e-17	N/A	unknown function
PHROG	UHGV-1864282_6	phrog_885	72.7	4.5e-21	major tail protein	tail
UniRef90	UHGV-1864282_6	UniRef90_A0A843J9F0	209.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1864282_6	1504822.CCNO01000012_gene492	247.0	0	N/A	N/A
structural_annotation	UHGV-1864282_6	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864282_7	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_8	phrog_17977	79.1	4.3e-23	N/A	unknown function
UniRef90	UHGV-1864282_8	UniRef90_UPI00141211AB	114.0	9.97e-31	head-tail adaptor protein	N/A
structural_annotation	UHGV-1864282_8	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_10	phrog_544	132.9	3.1e-39	major head protein	head and packaging
UniRef90	UHGV-1864282_10	UniRef90_A0A1C6B5R0	595.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1864282_10	1232453.BAIF02000011_gene3359	363.0	0	N/A	N/A
Pfam	UHGV-1864282_10	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1864282_10	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_11	phrog_194	44.0	0.0000000000043	head scaffolding protein	head and packaging
UniRef90	UHGV-1864282_11	UniRef90_A0A6B9SU02	153.0	1.73761e-43	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-1864282_11	476272.RUMHYD_01775	59.7	0.0000000251	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-1864282_11	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_12	phrog_5	82.4	7.9e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-1864282_12	UniRef90_A0A7X5E1T2	182.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1864282_12	764299.STRIC_1434	92.4	3e-22	N/A	N/A
Pfam	UHGV-1864282_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1864282_12	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1864282_12	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_13	phrog_115	118.8	4.9e-35	minor head protein	head and packaging
UniRef90	UHGV-1864282_13	UniRef90_A0A810PSD3	449.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1864282_13	1504822.CCNO01000013_gene286	218.0	0	cell adhesion	N/A
Pfam	UHGV-1864282_13	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1864282_13	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1864282_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864282_13	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_15	phrog_35892	42.1	0.0000000000037	N/A	unknown function
eggNOG-mapper	UHGV-1864282_15	36875.HQ29_03185	69.3	0.000000000157	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
Pfam	UHGV-1864282_15	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-1864282_15	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
structural_annotation	UHGV-1864282_15	PF13306	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1864282_16	411471.SUBVAR_06929	309.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1864282_16	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-1864282_18	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_19	phrog_64	155.2	0	portal protein	head and packaging
UniRef90	UHGV-1864282_19	UniRef90_UPI001AA0B7FF	496.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1864282_19	673376.F2VHW1_9CAUD	219.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1864282_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1864282_19	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1864282_20	K06909	102.5	4.9e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1864282_20	phrog_10250	117.0	1.5e-34	N/A	unknown function
UniRef90	UHGV-1864282_20	UniRef90_A0A1I3QR69	465.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1864282_20	748224.HMPREF9436_03341	340.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1864282_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1864282_20	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1864282_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1864282_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1864282_20	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1864282_22	K21527	152.7	1.4013e-45	mom; adenine modification enzyme [EC:2.3.1.-]	N/A
PHROG	UHGV-1864282_22	phrog_1384	156.1	0	Mom-like DNA modification protein	other
UniRef90	UHGV-1864282_22	UniRef90_A0A516MP09	252.0	0	Putative adenine modification enzyme	N/A
eggNOG-mapper	UHGV-1864282_22	619693.HMPREF6745_2515	280.0	0	N/A	N/A
structural_annotation	UHGV-1864282_22	PF16092,MF_02210,NF007025,COG3818	N/A	N/A	N/A	N/A
KOfam	UHGV-1864282_23	K03497	50.3	0.00000000000006	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1864282_23	phrog_620	143.4	1.19951e-42	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1864282_23	UniRef90_A0A3D3Y046	353.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-1864282_23	985665.HPL003_12065	112.0	1.04e-26	DNA methylase	N/A
PADLOC	UHGV-1864282_23	MTase_II_00015	81.8	1.4e-23	Type II methyltransferase	RM
Pfam	UHGV-1864282_23	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1864282_23	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1864282_23	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1864282_24	742738.HMPREF9460_02503	87.8	2.25e-21	N/A	N/A
structural_annotation	UHGV-1864282_24	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_26	phrog_1770	59.7	6.3e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1864282_26	32057.KB217481_gene8515	128.0	1.8e-35	N/A	N/A
structural_annotation	UHGV-1864282_26	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_30	phrog_38832	61.7	2.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1864282_30	445972.ANACOL_00165	61.2	0.0000000135	N/A	N/A
Pfam	UHGV-1864282_31	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1864282_31	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_32	phrog_424	77.3	2e-22	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1864282_32	445972.ANACOL_01819	497.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-1864282_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1864282_32	PF01507,MF_00064,NF010367,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_34	phrog_16304	56.6	5.4e-16	N/A	unknown function
UniRef90	UHGV-1864282_34	UniRef90_A0A3D3Y5P0	220.0	0	N/A	N/A
Pfam	UHGV-1864282_34	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1864282_34	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1864282_35	K03111	145.6	5.29691e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1864282_35	phrog_44	145.1	4.49817e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1864282_35	UniRef90_R6LVK0	198.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1864282_35	1007096.BAGW01000023_gene151	187.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1864282_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1864282_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1864282_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1864282_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1864282_35	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1864282_36	K07455	281.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1864282_36	phrog_148	272.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1864282_36	UniRef90_A0A1Y4W4R3	384.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1864282_36	1226322.HMPREF1545_00015	343.0	0	RecT family	N/A
Pfam	UHGV-1864282_36	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1864282_36	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1864282_36	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1864282_36	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_37	phrog_434	325.8	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1864282_37	UniRef90_A0A1Y4W4B5	418.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1864282_37	428125.CLOLEP_01823	337.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1864282_37	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1864282_37	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1864282_37	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1864282_37	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1864282_38	K24213	43.0	0.000000000005	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1864282_38	phrog_4433	244.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1864282_38	106648.BBLJ01000054_gene3814	98.2	8.86e-23	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-1864282_38	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1864282_38	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1864282_38	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864282_43	PF10548	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1864282_44	596152.DesU5LDRAFT_1910	92.8	1.11e-20	N/A	N/A
structural_annotation	UHGV-1864282_44	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
UniRef90	UHGV-1864282_45	UniRef90_UPI000F0633F9	63.5	0.00000000000653	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1864282_45	1235835.C814_03153	76.3	1.23e-17	N/A	N/A
structural_annotation	UHGV-1864282_45	PF09035,NF040990	N/A	N/A	N/A	N/A
UniRef90	UHGV-1864282_46	UniRef90_A0A1C7FQD9	88.2	1.63e-21	Transcriptional regulator	N/A
Pfam	UHGV-1864282_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1864282_46	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_47	phrog_8	47.2	0.00000000000051	transcriptional regulator	transcription regulation
UniRef90	UHGV-1864282_47	UniRef90_UPI001E54DE4F	85.1	2.86e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1864282_47	1378168.N510_01712	67.0	0.0000000000084	N/A	N/A
Pfam	UHGV-1864282_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1864282_47	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864282_50	PF03965,MF_01819,NF012168,COG3682	N/A	N/A	N/A	N/A
UniRef90	UHGV-1864282_52	UniRef90_A0A8D9UHA6	86.7	9.02e-18	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1864282_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1864282_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1864282_52	PF12844	N/A	N/A	N/A	N/A
KOfam	UHGV-1864282_53	K14059	132.9	4.3e-39	int; integrase	N/A
PHROG	UHGV-1864282_53	phrog_1	145.3	5.19882e-43	integrase	integration and excision
UniRef90	UHGV-1864282_53	UniRef90_UPI00195CC1EE	380.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1864282_53	1235835.C814_03141	194.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1864282_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1864282_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1864282_53	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1864282_54	1226322.HMPREF1545_00079	110.0	4.87e-30	N/A	N/A
structural_annotation	UHGV-1864282_55	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_56	phrog_20016	184.0	0	N/A	unknown function
UniRef90	UHGV-1864282_56	UniRef90_A0A285PT46	189.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1864282_56	1226322.HMPREF1545_00077	167.0	0	N/A	N/A
structural_annotation	UHGV-1864282_56	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_58	phrog_16490	129.8	1.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-1864282_58	1408437.JNJN01000043_gene803	108.0	1.79e-25	N/A	N/A
PHROG	UHGV-1864282_59	phrog_374	206.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1864282_59	357804.Ping_1595	152.0	1.10997e-41	N/A	N/A
PHROG	UHGV-1864282_60	phrog_22984	77.3	6.9e-23	N/A	unknown function
PHROG	UHGV-1864282_61	phrog_21718	105.0	6.7e-31	N/A	unknown function
eggNOG-mapper	UHGV-1864282_61	397290.C810_05210	62.4	0.000000000584	N/A	N/A
PHROG	UHGV-1864282_62	phrog_3754	92.0	6.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-1864282_62	476272.RUMHYD_01764	162.0	0	N/A	N/A
structural_annotation	UHGV-1864282_63	PF16509,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_64	phrog_14030	143.8	1.10002e-42	N/A	unknown function
UniRef90	UHGV-1864282_64	UniRef90_R6LL81	244.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1864282_64	1121866.AUGK01000003_gene1444	90.9	3.28e-18	amidase activity	N/A
COG	UHGV-1864282_64	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1864282_65	phrog_13256	66.7	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1864282_65	1226322.HMPREF1545_00132	72.8	5.16e-16	N/A	N/A
Pfam	UHGV-1864282_68	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-1864282_68	COG4447	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1864282_68	PF07484	N/A	N/A	N/A	N/A
Pfam	UHGV-1864282_69	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1864282_69	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
PHROG	UHGV-1864282_70	phrog_18725	75.1	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1864282_70	693746.OBV_18220	115.0	6.46e-31	N/A	N/A