UHGV-1866108 (vOTU-058762)

Viral Genome: UHGV-1866108

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1866108
vOTU ID	vOTU-058762
Representative Genome?	Yes
Source	DEVoC
Original genome ID	ViralSequence534
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.48
Jumbo phage	No

Genome content
Genome length (bp)	37,870
GC content	52.15%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	92%
Average CDS length (bps)	553.24
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1866108_1	phrog_3754	96.4	2.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-1866108_1	476272.RUMHYD_01764	153.0	0	N/A	N/A
PHROG	UHGV-1866108_2	phrog_21718	98.9	2.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1866108_2	397290.C810_05210	86.3	2.45e-19	N/A	N/A
PHROG	UHGV-1866108_3	phrog_22984	82.6	3.8e-24	N/A	unknown function
PHROG	UHGV-1866108_4	phrog_16490	152.7	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-1866108_4	1408437.JNJN01000043_gene803	131.0	1.48e-34	N/A	N/A
PHROG	UHGV-1866108_5	phrog_20016	207.2	0	N/A	unknown function
UniRef90	UHGV-1866108_5	UniRef90_A0A285PT46	200.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1866108_5	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-1866108_5	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1866108_6	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1866108_7	1226322.HMPREF1545_00079	72.4	0.00000000000000427	N/A	N/A
KOfam	UHGV-1866108_8	K06400	292.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1866108_8	phrog_95	319.2	0	integrase	integration and excision
UniRef90	UHGV-1866108_8	UniRef90_A0A3A9ED02	382.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-1866108_8	1378168.N510_03180	288.0	0	resolvase	N/A
Pfam	UHGV-1866108_8	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1866108_8	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1866108_8	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1866108_8	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1866108_8	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1866108_9	PF13560,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_10	phrog_17658	58.5	1.5e-16	N/A	unknown function
structural_annotation	UHGV-1866108_10	PF18116	N/A	N/A	N/A	N/A
KOfam	UHGV-1866108_13	K22300	74.4	2.1e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1866108_13	phrog_8	60.8	3.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1866108_13	UniRef90_UPI00156FE30C	79.7	1.7e-16	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1866108_13	696281.Desru_0419	52.8	0.00000228	sequence-specific DNA binding	N/A
PADLOC	UHGV-1866108_13	retron_type_VI_hth_cluster2_1	43.0	0.0000000000074	N/A	Retron
Pfam	UHGV-1866108_13	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1866108_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1866108_13	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_18	phrog_5070	101.8	4.7e-30	N/A	unknown function
UniRef90	UHGV-1866108_18	UniRef90_B0PAM0	110.0	1.98e-27	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-1866108_18	887929.HMP0721_1276	123.0	8.35e-34	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-1866108_18	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1866108_19	PF00412	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_21	phrog_14970	246.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1866108_21	411468.CLOSCI_00315	199.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1866108_21	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1866108_21	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1866108_21	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_22	phrog_72	57.5	1.4e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1866108_22	UniRef90_UPI000C7BF263	118.0	1.22e-30	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1866108_22	445972.ANACOL_01825	129.0	2.21e-35	N/A	N/A
structural_annotation	UHGV-1866108_22	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_23	phrog_7370	51.0	0.000000000000023	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1866108_23	UniRef90_A0A3D3Y4P7	132.0	5.96e-38	HNH domain-containing protein	N/A
Pfam	UHGV-1866108_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1866108_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1866108_24	K03111	135.2	7.69999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1866108_24	phrog_44	138.3	4.99997e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1866108_24	UniRef90_A0A2V2CEG7	151.0	1.12104e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1866108_24	693746.OBV_19910	147.0	9.52883e-44	Single-strand binding protein family	N/A
Pfam	UHGV-1866108_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1866108_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1866108_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1866108_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1866108_24	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_25	phrog_190	112.7	3.1e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1866108_25	UniRef90_UPI001C0F5697	147.0	2.29813e-43	N/A	N/A
eggNOG-mapper	UHGV-1866108_25	1236514.BAKL01000051_gene3708	95.1	8.51e-24	N/A	N/A
Pfam	UHGV-1866108_25	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1866108_25	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_26	phrog_16304	75.7	7.4e-22	N/A	unknown function
UniRef90	UHGV-1866108_26	UniRef90_UPI001E36D421	116.0	3.58e-29	N/A	N/A
eggNOG-mapper	UHGV-1866108_26	1139219.I569_00067	107.0	1e-25	DnaD domain protein	N/A
Pfam	UHGV-1866108_26	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1866108_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1866108_26	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1866108_28	PF21291	N/A	N/A	N/A	N/A
KOfam	UHGV-1866108_32	K22300	42.2	0.000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1866108_32	phrog_8	42.5	0.000000000014	transcriptional regulator	transcription regulation
Pfam	UHGV-1866108_32	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1866108_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1866108_32	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_33	phrog_757	184.6	0	DNA methyltransferase	other
UniRef90	UHGV-1866108_33	UniRef90_A0A374BFJ7	327.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1866108_33	748224.HMPREF9436_03069	275.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1866108_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
eggNOG-mapper	UHGV-1866108_37	411459.RUMOBE_01385	63.2	0.0000000000112	N/A	N/A
KOfam	UHGV-1866108_38	K00571	87.5	1.3e-25	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1866108_38	phrog_498	290.3	0	DNA methyltransferase	other
UniRef90	UHGV-1866108_38	UniRef90_A0A3D2E2H5	306.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1866108_38	596323.HMPREF0554_0840	269.0	0	ParB-like nuclease domain	N/A
PADLOC	UHGV-1866108_38	MTase_II_00015	135.3	0	Type II methyltransferase	RM
Pfam	UHGV-1866108_38	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1866108_38	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1866108_38	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1866108_38	PF01555,PF02195,NF010253,TIGR00180,COG0863,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-1866108_40	K06909	127.5	1.4e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1866108_40	phrog_10250	174.4	0	N/A	unknown function
UniRef90	UHGV-1866108_40	UniRef90_A0A3D3Y0N9	635.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1866108_40	1226322.HMPREF1545_00043	582.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1866108_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1866108_40	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1866108_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1866108_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1866108_40	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_41	phrog_64	183.1	0	portal protein	head and packaging
UniRef90	UHGV-1866108_41	UniRef90_UPI001AA0B7FF	526.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1866108_41	673376.F2VHW1_9CAUD	238.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1866108_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1866108_41	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_42	phrog_595	102.4	5.7e-30	head maturation protease	head and packaging
UniRef90	UHGV-1866108_42	UniRef90_A0A1C7FSE6	368.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1866108_42	1280685.AUKC01000004_gene1632	102.0	7.57e-22	Phage Mu protein F like protein	N/A
Pfam	UHGV-1866108_42	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1866108_42	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1866108_42	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_43	phrog_5	75.4	1e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-1866108_43	UniRef90_A0A7X5E1T2	168.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1866108_43	1504822.CCNO01000013_gene284	89.0	3.7e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1866108_43	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1866108_43	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1866108_43	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1866108_44	PF18152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1866108_45	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_46	phrog_544	180.2	0	major head protein	head and packaging
UniRef90	UHGV-1866108_46	UniRef90_A0A810PZM2	630.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1866108_46	1347392.CCEZ01000005_gene1236	275.0	0	N/A	N/A
Pfam	UHGV-1866108_46	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1866108_46	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_48	phrog_17977	56.1	6e-16	N/A	unknown function
UniRef90	UHGV-1866108_48	UniRef90_UPI00141211AB	72.8	0.0000000000000121	head-tail adaptor protein	N/A
structural_annotation	UHGV-1866108_48	TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_49	phrog_17405	48.7	0.00000000000013	head protein	head and packaging
UniRef90	UHGV-1866108_49	UniRef90_A0A415JI88	111.0	3.55e-29	N/A	N/A
structural_annotation	UHGV-1866108_49	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_50	phrog_885	97.0	1.8e-28	major tail protein	tail
UniRef90	UHGV-1866108_50	UniRef90_A0A843J9F0	163.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1866108_50	1111121.HMPREF1247_0789	189.0	0	N/A	N/A
structural_annotation	UHGV-1866108_50	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_52	phrog_6900	234.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1866108_52	UniRef90_A0A1B1IM37	151.0	4.41409e-43	Putative tape measure protein	N/A
eggNOG-mapper	UHGV-1866108_52	1121334.KB911068_gene2299	166.0	2.8026e-45	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1866108_52	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1866108_52	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_53	phrog_1686	90.7	7e-35	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1866108_53	1688.BCUN_0388	107.0	6.76e-21	phage tail tape measure protein	N/A
COG	UHGV-1866108_53	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1866108_54	phrog_33	73.6	4.7e-21	distal tail protein Dit	tail
UniRef90	UHGV-1866108_54	UniRef90_A0A173Z1X4	111.0	2.65e-26	Phage-related protein	N/A
eggNOG-mapper	UHGV-1866108_54	203119.Cthe_1708	93.2	4.23e-20	Phage tail protein	N/A
COG	UHGV-1866108_54	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1866108_54	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_55	phrog_1067	256.3	0	minor head protein	head and packaging
UniRef90	UHGV-1866108_55	UniRef90_A0A1C6H6B4	372.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1866108_55	1123263.AUKY01000068_gene489	305.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1866108_55	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1866108_55	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1866108_55	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1866108_55	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1866108_56	PF05382,COG3738	N/A	N/A	N/A	N/A
PHROG	UHGV-1866108_57	phrog_366	43.1	0.0000000000063	tail fiber protein	tail
Pfam	UHGV-1866108_57	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1866108_59	phrog_1863	71.7	5.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1866108_59	665956.HMPREF1032_03922	96.3	4.94e-25	N/A	N/A
PHROG	UHGV-1866108_60	phrog_443	61.0	3.5e-17	holin	lysis
UniRef90	UHGV-1866108_60	UniRef90_UPI000C852E5F	91.3	9.1e-23	holin	N/A
eggNOG-mapper	UHGV-1866108_60	397288.C806_00114	88.2	2.47e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1866108_60	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1866108_60	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1866108_61	K07273	186.9	0	acm; lysozyme	N/A
PHROG	UHGV-1866108_61	phrog_291	151.3	8.40779e-45	endolysin	lysis
UniRef90	UHGV-1866108_61	UniRef90_A0A1I3PDY7	168.0	1.4013e-45	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
eggNOG-mapper	UHGV-1866108_61	1280666.ATVS01000042_gene1121	149.0	5.97e-37	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1866108_61	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1866108_61	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1866108_61	PF01183,PF19127,TIGR04035,TIGR04303,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1866108_62	PF13404,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1866108_63	469378.Ccur_02570	61.6	0.00000000000419	N/A	N/A