UHGV-1869701 (vOTU-104053)

Viral Genome: UHGV-1869701

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1869701
vOTU ID	vOTU-104053
Representative Genome?	Yes
Source	DEVoC
Original genome ID	ViralSequence991
Associated BioSample	SAMN18819142
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.48 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9744
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.46
Jumbo phage	No

Genome content
Genome length (bp)	22,955
GC content	43.68%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	33
CDS density	93%
Average CDS length (bps)	648.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1869701_1	phrog_361	74.4	1.5e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1869701_1	UniRef90_A0A1C6H6I9	142.0	3.03998e-41	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1869701_1	1145276.T479_19995	50.4	0.0000052	Phage terminase, small subunit	N/A
Pfam	UHGV-1869701_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1869701_1	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1869701_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_2	phrog_9	296.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1869701_2	UniRef90_A0A0D8IV16	1002.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1869701_2	1226322.HMPREF1545_00113	902.0	0	Phage Terminase	N/A
Pfam	UHGV-1869701_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1869701_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1869701_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1869701_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_3	phrog_12	195.8	0	portal protein	head and packaging
UniRef90	UHGV-1869701_3	UniRef90_A0A0D8IVL0	551.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1869701_3	1226322.HMPREF1545_00114	471.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1869701_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1869701_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1869701_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1869701_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1869701_4	K06904	156.6	0	N/A	N/A
PHROG	UHGV-1869701_4	phrog_80	181.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1869701_4	UniRef90_U2SBX0	265.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-1869701_4	1226322.HMPREF1545_00115	265.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1869701_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1869701_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1869701_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1869701_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_5	phrog_10	215.2	0	major head protein	head and packaging
UniRef90	UHGV-1869701_5	UniRef90_UPI000679B959	688.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1869701_5	1226322.HMPREF1545_00116	554.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1869701_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1869701_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1869701_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1869701_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1869701_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_6	phrog_2550	62.5	4.2e-18	N/A	unknown function
UniRef90	UHGV-1869701_6	UniRef90_UPI0008717716	74.7	0.00000000000000163	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1869701_6	1226322.HMPREF1545_00117	71.2	0.00000000000000648	N/A	N/A
structural_annotation	UHGV-1869701_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_7	phrog_19734	67.8	1.7e-19	N/A	unknown function
UniRef90	UHGV-1869701_7	UniRef90_A0A316NL63	92.4	5.54e-22	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1869701_7	999413.HMPREF1094_02006	62.0	0.0000000000932	N/A	N/A
structural_annotation	UHGV-1869701_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_8	phrog_78	45.4	0.0000000000015	tail terminator	connector
eggNOG-mapper	UHGV-1869701_8	1232446.BAIE02000002_gene829	80.1	5.26e-18	N/A	N/A
structural_annotation	UHGV-1869701_8	PF05657,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1869701_9	UniRef90_A0A1C6FG30	121.0	1.44e-32	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1869701_9	908340.HMPREF9406_2573	92.8	4.18e-22	N/A	N/A
PHROG	UHGV-1869701_10	phrog_88	96.2	3.6e-28	major tail protein	tail
UniRef90	UHGV-1869701_10	UniRef90_G9YSC5	118.0	6.32e-30	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1869701_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1869701_10	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1869701_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_12	phrog_1272	109.9	2.59941e-42	tail length tape measure protein	tail
UniRef90	UHGV-1869701_12	UniRef90_A0A1Y4R6K5	320.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1869701_12	1160721.RBI_II00528	224.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1869701_12	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-1869701_12	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_13	phrog_33	48.7	0.00000000000018	distal tail protein Dit	tail
UniRef90	UHGV-1869701_13	UniRef90_A0A1C5W6B6	151.0	8.54932e-42	Phage-related protein	N/A
eggNOG-mapper	UHGV-1869701_13	1123263.AUKY01000068_gene490	108.0	3.38e-26	tail component	N/A
COG	UHGV-1869701_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1869701_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_14	phrog_1067	349.4	0	minor head protein	head and packaging
UniRef90	UHGV-1869701_14	UniRef90_A0A1C6H6B4	457.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1869701_14	1123263.AUKY01000068_gene489	345.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1869701_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1869701_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1869701_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1869701_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_15	phrog_16573	55.6	4.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-1869701_15	1160721.RBI_I01572	85.5	4.68e-16	N/A	N/A
Pfam	UHGV-1869701_15	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-1869701_16	phrog_24451	91.0	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1869701_16	931276.Cspa_c07590	86.3	2.11e-20	N/A	N/A
PHROG	UHGV-1869701_17	phrog_18593	122.2	2.7e-36	N/A	unknown function
UniRef90	UHGV-1869701_17	UniRef90_R6RWR8	172.0	0	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-1869701_17	411460.RUMTOR_02099	141.0	4.31e-40	N/A	N/A
Pfam	UHGV-1869701_17	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1869701_17	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1869701_18	phrog_937	52.6	0.0000000000000092	hemolysin	other
eggNOG-mapper	UHGV-1869701_18	1235792.C808_00576	88.6	1.67e-21	N/A	N/A
PHROG	UHGV-1869701_19	phrog_10091	104.8	6.1e-31	holin	lysis
UniRef90	UHGV-1869701_19	UniRef90_A0A1Y4IXC2	136.0	5.71e-40	Phage holin	N/A
eggNOG-mapper	UHGV-1869701_19	428127.EUBDOL_01206	131.0	1.06e-38	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1869701_19	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1869701_19	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1869701_19	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1869701_19	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-1869701_20	K07273	236.2	0	acm; lysozyme	N/A
PHROG	UHGV-1869701_20	phrog_291	170.7	0	endolysin	lysis
UniRef90	UHGV-1869701_20	UniRef90_A0A1C5WYX1	231.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1869701_20	537013.CLOSTMETH_02711	211.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1869701_20	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1869701_20	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1869701_20	PF01183,NF002575,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-1869701_21	K14059	144.3	1.49939e-42	int; integrase	N/A
PHROG	UHGV-1869701_21	phrog_1	142.9	2.90069e-42	integrase	integration and excision
UniRef90	UHGV-1869701_21	UniRef90_UPI0011C8F252	320.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1869701_21	693746.OBV_25530	228.0	0	Phage integrase family	N/A
Pfam	UHGV-1869701_21	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1869701_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1869701_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1869701_21	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1869701_23	K02342	115.9	4e-34	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1869701_23	phrog_192	109.0	3.8e-32	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1869701_23	UniRef90_UPI00145AEB3D	211.0	0	DNA polymerase III	N/A
eggNOG-mapper	UHGV-1869701_23	748727.CLJU_c36230	155.0	5.48006e-41	3' exoribonuclease, RNase T-like	N/A
PADLOC	UHGV-1869701_23	cd06127	83.7	4.7e-24	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1869701_23	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-1869701_23	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-1869701_23	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-1869701_23	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1869701_24	1232453.BAIF02000097_gene2773	62.4	0.00000000374	EXOIII	N/A
COG	UHGV-1869701_24	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
KOfam	UHGV-1869701_26	K22300	63.7	4.3e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1869701_26	phrog_2439	52.6	0.0000000000000059	transcriptional regulator	transcription regulation
UniRef90	UHGV-1869701_26	UniRef90_UPI001B119A5C	79.7	3.43e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1869701_26	10717.Q786F1_BPPH1	72.8	0.00000000000000637	sequence-specific DNA binding	N/A
PADLOC	UHGV-1869701_26	retron_type_VI_hth_cluster2_1	58.3	1.6e-16	N/A	Retron
Pfam	UHGV-1869701_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1869701_26	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1869701_27	K07729	54.2	0.0000000000000036	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1869701_27	phrog_1373	47.1	0.00000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-1869701_27	UniRef90_A0A358QWM1	87.4	9.73e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1869701_27	546271.Selsp_1361	60.8	0.000000000191	Transcriptional	N/A
PADLOC	UHGV-1869701_27	retron_type_VI_hth_cluster2_1	50.7	0.000000000000054	N/A	Retron
Pfam	UHGV-1869701_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1869701_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-1869701_29	K22300	51.1	0.00000000000003	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1869701_29	phrog_8	72.4	9.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1869701_29	UniRef90_A0A3A9DV85	124.0	5.28e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1869701_29	864563.HMPREF9166_0595	114.0	1.22e-32	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1869701_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1869701_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1869701_29	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1869701_30	UniRef90_A0A3A9I6A9	102.0	4.96e-27	XRE family transcriptional regulator	N/A
Pfam	UHGV-1869701_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1869701_30	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1869701_30	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1869701_31	UniRef90_UPI001C1173DA	53.9	0.000000101	helix-turn-helix domain-containing protein	N/A
COG	UHGV-1869701_31	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1869701_31	PF05339,NF041575,COG3655	N/A	N/A	N/A	N/A