UHGV-1870268 (vOTU-058830)

Viral Genome: UHGV-1870268

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1870268
vOTU ID	vOTU-058830
Representative Genome?	Yes
Source	GFD
Original genome ID	GFD_13.6_NODE_50_length_42325_cov_16.513083
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.52
Jumbo phage	No

Genome content
Genome length (bp)	42,270
GC content	50.43%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	88%
Average CDS length (bps)	630.41
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1870268_1	K14059	133.7	2.6e-39	int; integrase	N/A
PHROG	UHGV-1870268_1	phrog_1	104.6	1.3e-30	integrase	integration and excision
UniRef90	UHGV-1870268_1	UniRef90_UPI0009AE1946	253.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1870268_1	537013.CLOSTMETH_02136	197.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1870268_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1870268_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1870268_1	PF00589,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1870268_2	K20342	55.8	8.3e-16	comR; HTH-type transcriptional regulator, regulator for ComX	N/A
PHROG	UHGV-1870268_2	phrog_8	46.2	0.000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-1870268_2	UniRef90_UPI00082D6F42	151.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1870268_2	1121931.AUHG01000003_gene900	61.2	0.000000000172	N/A	N/A
PADLOC	UHGV-1870268_2	Control_protein_00002	44.9	0.0000000000031	control protein	RM
Pfam	UHGV-1870268_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1870268_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1870268_2	PF01381,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_4	phrog_13890	55.7	6.6e-16	N/A	unknown function
UniRef90	UHGV-1870268_4	UniRef90_UPI000830B4CD	113.0	7.05e-32	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-1870268_4	1519439.JPJG01000054_gene2127	50.4	0.000000136	N/A	N/A
Pfam	UHGV-1870268_4	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
structural_annotation	UHGV-1870268_4	PF19807,NF010256,COG4453	N/A	N/A	N/A	N/A
KOfam	UHGV-1870268_5	K22299	46.1	0.0000000000011	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1870268_5	phrog_5823	49.9	0.000000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-1870268_5	UniRef90_UPI00082B5ED2	244.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1870268_5	445972.ANACOL_00325	69.3	0.000000000000239	sequence-specific DNA binding	N/A
PADLOC	UHGV-1870268_5	retron_type_VI_hth_cluster2_1	55.2	0.0000000000000018	N/A	Retron
Pfam	UHGV-1870268_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1870268_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1870268_6	phrog_3243	68.8	6.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-1870268_6	266762.HQ36_01995	70.9	0.0000000000304	N/A	N/A
structural_annotation	UHGV-1870268_6	PF15072,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
UniRef90	UHGV-1870268_7	UniRef90_A0A1C6H462	487.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1870268_7	1408437.JNJN01000060_gene452	472.0	0	heme binding	N/A
COG	UHGV-1870268_7	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-1870268_9	phrog_937	48.8	0.00000000000014	hemolysin	other
eggNOG-mapper	UHGV-1870268_9	1297617.JPJD01000099_gene2176	53.1	0.0000000909	N/A	N/A
KOfam	UHGV-1870268_10	K19304	73.0	5.2e-21	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1870268_10	phrog_3578	74.4	1.7e-21	metallo-endopeptidase	other
UniRef90	UHGV-1870268_10	UniRef90_A0A413G5Q6	493.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1870268_10	1235835.C814_01941	337.0	0	Peptidase family M23	N/A
Pfam	UHGV-1870268_10	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1870268_10	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1870268_10	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_11	phrog_33625	57.0	1.7e-16	holin	lysis
UniRef90	UHGV-1870268_11	UniRef90_A0A413G5S1	187.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-1870268_11	1232443.BAIA02000106_gene3114	145.0	3.36312e-44	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1870268_11	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1870268_11	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1870268_11	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1870268_11	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_13	phrog_30034	89.0	7.3e-26	N/A	unknown function
UniRef90	UHGV-1870268_13	UniRef90_UPI00189D24DB	195.0	0	alpha-amylase	N/A
eggNOG-mapper	UHGV-1870268_13	552398.HMPREF0866_03095	143.0	1.85994e-41	N/A	N/A
Pfam	UHGV-1870268_13	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1870268_13	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_16	phrog_10993	169.8	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1870268_16	UniRef90_A0A413FU47	548.0	0	N/A	N/A
eggNOG-mapper	UHGV-1870268_16	718252.FP2_16970	132.0	2.71e-32	N/A	N/A
Pfam	UHGV-1870268_16	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1870268_16	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_17	phrog_10993	126.2	2e-37	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1870268_17	UniRef90_UPI00082E6BB0	426.0	0	N/A	N/A
eggNOG-mapper	UHGV-1870268_17	742738.HMPREF9460_02534	114.0	3.23e-25	N/A	N/A
Pfam	UHGV-1870268_17	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1870268_17	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_18	phrog_18608	97.1	1.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-1870268_18	1232449.BAHV02000016_gene1815	149.0	6.77e-36	N/A	N/A
PHROG	UHGV-1870268_19	phrog_3287	146.8	2.8026e-45	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1870268_19	665956.HMPREF1032_03917	603.0	0	N/A	N/A
structural_annotation	UHGV-1870268_19	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1870268_20	693746.OBV_23880	129.0	1.07e-34	N/A	N/A
structural_annotation	UHGV-1870268_20	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_21	phrog_371	145.2	4.1058e-43	major head protein	head and packaging
UniRef90	UHGV-1870268_21	UniRef90_R6TFU9	315.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-1870268_21	1226322.HMPREF1545_03848	402.0	0	N/A	N/A
Pfam	UHGV-1870268_21	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1870268_21	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_22	phrog_24113	117.8	4.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-1870268_22	1226322.HMPREF1545_03847	98.2	1.75e-24	N/A	N/A
structural_annotation	UHGV-1870268_22	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_23	phrog_35275	64.8	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1870268_23	1226322.HMPREF1545_03846	72.0	0.0000000000112	N/A	N/A
PHROG	UHGV-1870268_25	phrog_156	274.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1870268_25	1519439.JPJG01000060_gene1886	575.0	0	N/A	N/A
structural_annotation	UHGV-1870268_25	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1870268_26	K06909	248.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1870268_26	phrog_3717	227.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1870268_26	UniRef90_UPI00082C9116	993.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1870268_26	445971.ANASTE_00711	570.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1870268_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1870268_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1870268_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1870268_26	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_27	phrog_606	68.0	1.6e-19	terminase small subunit	head and packaging
UniRef90	UHGV-1870268_27	UniRef90_UPI001F487344	151.0	1.82169e-44	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1870268_27	397290.C810_05185	129.0	3.29e-36	DNA-packaging protein gp3	N/A
Pfam	UHGV-1870268_27	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1870268_27	PF16677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1870268_30	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_33	phrog_2717	48.2	0.00000000000018	N/A	unknown function
eggNOG-mapper	UHGV-1870268_33	552398.HMPREF0866_02231	82.4	1.96e-18	N/A	N/A
PHROG	UHGV-1870268_34	phrog_8684	47.9	0.000000000000063	N/A	unknown function
UniRef90	UHGV-1870268_37	UniRef90_UPI00082EBC63	182.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1870268_37	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
COG	UHGV-1870268_37	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
KOfam	UHGV-1870268_39	K01160	60.7	4.5e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1870268_39	phrog_34	70.6	2.8e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1870268_39	UniRef90_A0A498CNH4	190.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1870268_39	477974.Daud_0813	58.5	0.00000000737	N/A	N/A
structural_annotation	UHGV-1870268_39	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_40	phrog_1408	72.7	4.6e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1870268_40	UniRef90_A0A417QFV0	110.0	8.08e-26	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1870268_40	1095750.HMPREF9970_1674	150.0	2.62996e-41	N/A	N/A
structural_annotation	UHGV-1870268_40	PF01978,MF_01819,NF041413,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1870268_41	K03111	154.0	1.4013e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1870268_41	phrog_44	156.7	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1870268_41	UniRef90_A0A413G501	250.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1870268_41	1235835.C814_01372	228.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1870268_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1870268_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1870268_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1870268_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1870268_41	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_42	phrog_1389	65.5	8.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1870268_42	1347392.CCEZ01000060_gene3269	108.0	2.93e-29	N/A	N/A
structural_annotation	UHGV-1870268_42	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_43	phrog_7566	107.2	7.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-1870268_43	508419.F8J187_9CAUD	98.2	1.25e-25	N/A	N/A
PHROG	UHGV-1870268_44	phrog_14970	229.0	0	N/A	unknown function
UniRef90	UHGV-1870268_44	UniRef90_A0A1C5NV07	167.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-1870268_44	428127.EUBDOL_01248	193.0	0	double-strand break repair protein	N/A
COG	UHGV-1870268_44	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1870268_44	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1870268_46	PF14445	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_48	phrog_2113	46.4	0.00000000000051	N/A	unknown function
UniRef90	UHGV-1870268_48	UniRef90_UPI000835921F	195.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1870268_48	PF08279	N/A	N/A	HTH domain	HTH_11
PHROG	UHGV-1870268_49	phrog_1033	50.4	0.000000000000014	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1870268_49	UniRef90_UPI0013716616	137.0	1.17e-35	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-1870268_49	1235797.C816_04224	221.0	0	DNA binding	N/A
Pfam	UHGV-1870268_49	PF20188	N/A	N/A	N/A	DUF6551
COG	UHGV-1870268_49	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1870268_49	PF20188,MF_02015,TIGR04172,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1870268_50	K03497	90.3	3.3e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1870268_50	phrog_3264	128.2	5.6e-38	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1870268_50	UniRef90_UPI000832D006	514.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1870268_50	397290.C810_00536	192.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1870268_50	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1870268_50	PF17762	N/A	N/A	HTH domain found in ParB protein	HTH_ParB
COG	UHGV-1870268_50	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
UniRef90	UHGV-1870268_53	UniRef90_UPI0011CB51AD	104.0	8.59e-28	excisionase family DNA-binding protein	N/A
eggNOG-mapper	UHGV-1870268_53	1408437.JNJN01000010_gene1230	82.8	5.35e-20	N/A	N/A
structural_annotation	UHGV-1870268_53	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_56	phrog_4738	42.4	0.0000000000047	transcriptional repressor	transcription regulation
UniRef90	UHGV-1870268_56	UniRef90_G4KRC4	60.1	0.0000000556	Peptidase_S24 domain-containing protein	N/A
eggNOG-mapper	UHGV-1870268_56	445972.ANACOL_01808	62.8	0.000000000034	N/A	N/A
PHROG	UHGV-1870268_57	phrog_1914	104.1	1.4e-30	N/A	unknown function
UniRef90	UHGV-1870268_57	UniRef90_UPI000C7BE6C5	196.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1870268_57	1121334.KB911073_gene1841	102.0	4.78e-24	N/A	N/A
Pfam	UHGV-1870268_57	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1870268_57	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1870268_57	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1870268_58	phrog_5978	135.7	3.3e-40	N/A	unknown function
UniRef90	UHGV-1870268_58	UniRef90_A0A2N0UXR1	363.0	0	Adenosine monophosphate-protein transferase SoFic	N/A
eggNOG-mapper	UHGV-1870268_58	936375.HMPREF1152_1541	329.0	0	Filamentation induced by cAMP protein fic	N/A
Pfam	UHGV-1870268_58	PF02661	N/A	N/A	Fic/DOC family	Fic
COG	UHGV-1870268_58	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-1870268_58	PF07183,MF_01911,NF040876,COG3177	N/A	N/A	N/A	N/A
KOfam	UHGV-1870268_59	K14059	141.0	1.70006e-41	int; integrase	N/A
PHROG	UHGV-1870268_59	phrog_1	118.5	7.4e-35	integrase	integration and excision
UniRef90	UHGV-1870268_59	UniRef90_A0A413G8M9	295.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1870268_59	877411.JMMA01000002_gene204	247.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1870268_59	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-1870268_59	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1870268_59	MF_01808,NF002331,COG4973	N/A	N/A	N/A	N/A