UHGV-1874583 (vOTU-116439)

Viral Genome: UHGV-1874583

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1874583
vOTU ID	vOTU-116439
Representative Genome?	Yes
Source	DEVoC
Original genome ID	ViralSequence439
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9541
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.1
Jumbo phage	No

Genome content
Genome length (bp)	41,511
GC content	49.97%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	92%
Average CDS length (bps)	816.64
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1874583_1	phrog_4259	115.4	2.1e-34	N/A	unknown function
UniRef90	UHGV-1874583_1	UniRef90_D4P7B9	94.4	1.2e-22	Gp008	N/A
eggNOG-mapper	UHGV-1874583_1	691965.D4P7B9_9CAUD	94.4	2.01e-23	N/A	N/A
PHROG	UHGV-1874583_2	phrog_4321	201.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1874583_2	UniRef90_A0A649V6Q6	169.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1874583_2	411460.RUMTOR_01352	187.0	0	N/A	N/A
PHROG	UHGV-1874583_3	phrog_4247	161.7	0	virion structural protein	head and packaging
UniRef90	UHGV-1874583_3	UniRef90_D4P7C3	128.0	3.82e-36	Structural protein	N/A
eggNOG-mapper	UHGV-1874583_3	428125.CLOLEP_01407	130.0	9.85e-38	N/A	N/A
PHROG	UHGV-1874583_4	phrog_7021	85.0	9.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1874583_4	411460.RUMTOR_01350	62.8	0.000000000114	N/A	N/A
PHROG	UHGV-1874583_5	phrog_9	244.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1874583_5	UniRef90_A0A7X5ECI8	907.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1874583_5	742740.HMPREF9474_02272	922.0	0	Phage Terminase	N/A
Pfam	UHGV-1874583_5	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1874583_5	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1874583_5	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1874583_5	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_7	phrog_12	110.8	5.3e-33	portal protein	head and packaging
UniRef90	UHGV-1874583_7	UniRef90_A0A1Y4MMD6	575.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1874583_7	742733.HMPREF9469_05032	568.0	0	Phage portal protein	N/A
Pfam	UHGV-1874583_7	PF04860	N/A	N/A	Phage portal protein	Phage_portal
structural_annotation	UHGV-1874583_7	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1874583_8	K06904	66.6	4.3e-19	N/A	N/A
PHROG	UHGV-1874583_8	phrog_3270	735.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1874583_8	UniRef90_A0A372V7I1	853.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-1874583_8	428125.CLOLEP_01412	810.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1874583_8	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
structural_annotation	UHGV-1874583_8	PF04586,PF06673,TIGR01543,TIGR01554,COG3740,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_9	phrog_31690	127.2	6.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-1874583_9	1232452.BAIB02000007_gene1624	53.9	0.000000114	N/A	N/A
structural_annotation	UHGV-1874583_9	PF18207	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_10	phrog_4270	155.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1874583_10	665956.HMPREF1032_00677	137.0	1.36e-40	N/A	N/A
structural_annotation	UHGV-1874583_10	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_11	phrog_2645	311.6	0	major tail protein	tail
UniRef90	UHGV-1874583_11	UniRef90_A0A2U8UI58	260.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-1874583_11	742740.HMPREF9474_02267	247.0	0	N/A	N/A
structural_annotation	UHGV-1874583_11	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_12	phrog_4282	147.7	5.46506e-44	N/A	unknown function
eggNOG-mapper	UHGV-1874583_12	411460.RUMTOR_01340	103.0	2.39e-26	N/A	N/A
PHROG	UHGV-1874583_13	phrog_4338	257.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1874583_13	742733.HMPREF9469_05023	208.0	0	N/A	N/A
UniRef90	UHGV-1874583_14	UniRef90_A0A7X4ZPC4	130.0	7.61e-37	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1874583_14	742740.HMPREF9474_02263	128.0	1.48e-36	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1874583_14	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1874583_14	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_15	phrog_4372	651.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1874583_15	UniRef90_UPI0018A04E48	539.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1874583_15	478749.BRYFOR_08513	480.0	0	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-1874583_15	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-1874583_15	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
NCBIFam	UHGV-1874583_15	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1874583_15	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
PHROG	UHGV-1874583_17	phrog_9151	48.7	0.00000000000015	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1874583_17	UniRef90_A0A5M9HU25	60.1	0.000000000109	Type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-1874583_17	472759.Nhal_3030	52.4	0.0000000575	HicB family	N/A
COG	UHGV-1874583_17	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
PHROG	UHGV-1874583_18	phrog_643	42.6	0.0000000000074	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1874583_18	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_19	phrog_643	53.1	0.0000000000000059	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1874583_19	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_20	phrog_33	70.7	3.1e-20	distal tail protein Dit	tail
UniRef90	UHGV-1874583_20	UniRef90_A0A1W1Z4I2	187.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1874583_20	931276.Cspa_c07550	114.0	5.58e-28	tail component	N/A
COG	UHGV-1874583_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1874583_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_21	phrog_1067	184.4	0	minor head protein	head and packaging
eggNOG-mapper	UHGV-1874583_21	195103.CPF_1574	92.8	5.18e-16	Prophage endopeptidase tail	N/A
Pfam	UHGV-1874583_21	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1874583_21	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1874583_21	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-1874583_22	phrog_372	95.0	7.2e-28	tail protein	tail
eggNOG-mapper	UHGV-1874583_22	1231377.C426_1940	68.6	0.00000000322	N/A	N/A
Pfam	UHGV-1874583_22	PF05895	N/A	N/A	N/A	DUF859
PHROG	UHGV-1874583_25	phrog_35541	200.5	0	N/A	unknown function
UniRef90	UHGV-1874583_25	UniRef90_A0A3D6B2G4	224.0	0	Mtd_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1874583_25	411470.RUMGNA_00120	64.7	0.000000012	N/A	N/A
Pfam	UHGV-1874583_25	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
structural_annotation	UHGV-1874583_25	PF18454	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1874583_26	1200557.JHWV01000006_gene1705	89.0	5.91e-17	Membrane	N/A
COG	UHGV-1874583_26	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1874583_27	phrog_18608	46.8	0.00000000000027	N/A	unknown function
eggNOG-mapper	UHGV-1874583_27	1294142.CINTURNW_0307	71.2	0.000000000107	N/A	N/A
PHROG	UHGV-1874583_28	phrog_36886	64.1	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-1874583_28	665956.HMPREF1032_02937	92.4	7.31e-18	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-1874583_28	PF00754	N/A	N/A	F5/8 type C domain	F5_F8_type_C
COG	UHGV-1874583_28	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-1874583_29	phrog_14030	155.4	0	N/A	unknown function
UniRef90	UHGV-1874583_29	UniRef90_G5FC83	177.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-1874583_29	411461.DORFOR_00720	179.0	0	N/A	N/A
Pfam	UHGV-1874583_29	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-1874583_29	PF01471,PF18342,TIGR02869,TIGR04457,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_30	phrog_937	51.7	0.000000000000016	hemolysin	other
PHROG	UHGV-1874583_31	phrog_13239	74.7	1.5e-21	N/A	unknown function
UniRef90	UHGV-1874583_31	UniRef90_UPI001D0692FC	103.0	2.03e-27	phage holin	N/A
eggNOG-mapper	UHGV-1874583_31	742740.HMPREF9474_02251	104.0	1.1e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-1874583_31	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1874583_31	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_32	phrog_32444	53.2	0.0000000000000045	N/A	unknown function
eggNOG-mapper	UHGV-1874583_32	478749.BRYFOR_08525	57.4	0.000000147	N/A	N/A
Pfam	UHGV-1874583_32	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
structural_annotation	UHGV-1874583_32	PF21435,NF011786	N/A	N/A	N/A	N/A
KOfam	UHGV-1874583_34	K14059	201.1	0	int; integrase	N/A
PHROG	UHGV-1874583_34	phrog_1	193.0	0	integrase	integration and excision
UniRef90	UHGV-1874583_34	UniRef90_UPI0018A92BEB	140.0	2.68e-35	site-specific integrase	N/A
eggNOG-mapper	UHGV-1874583_34	1235793.C809_03065	134.0	1.32e-33	Phage integrase family	N/A
Pfam	UHGV-1874583_34	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-1874583_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1874583_34	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1874583_34	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
UniRef90	UHGV-1874583_35	UniRef90_A0A374JNR5	110.0	2.03e-29	N/A	N/A
eggNOG-mapper	UHGV-1874583_35	397290.C810_02398	94.0	8.68e-23	Transposase	N/A
Pfam	UHGV-1874583_35	PF20020	N/A	N/A	N/A	DUF6431
COG	UHGV-1874583_35	COG3464	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-1874583_35	PF20020,TIGR03831,COG3436	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_36	phrog_11237	162.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1874583_36	742740.HMPREF9474_02326	159.0	0	N/A	N/A
PHROG	UHGV-1874583_38	phrog_15309	58.0	1.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1874583_38	742733.HMPREF9469_05090	56.6	0.00000000101	N/A	N/A
PHROG	UHGV-1874583_39	phrog_15866	53.3	2.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-1874583_39	428125.CLOLEP_01351	71.2	0.0000000000000196	N/A	N/A
PHROG	UHGV-1874583_40	phrog_2152	170.9	0	N/A	unknown function
UniRef90	UHGV-1874583_40	UniRef90_UPI00156EA150	160.0	4.2039e-45	N/A	N/A
eggNOG-mapper	UHGV-1874583_40	665950.HMPREF1025_01940	150.0	6.0396e-42	N/A	N/A
Pfam	UHGV-1874583_40	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-1874583_40	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_42	phrog_2152	259.1	0	N/A	unknown function
UniRef90	UHGV-1874583_42	UniRef90_UPI0011CA98EE	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-1874583_42	411460.RUMTOR_02024	276.0	0	N/A	N/A
Pfam	UHGV-1874583_42	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-1874583_42	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-1874583_44	phrog_4079	157.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1874583_44	742733.HMPREF9469_05076	145.0	2.68993e-41	N/A	N/A
PHROG	UHGV-1874583_46	phrog_236	89.9	5.4e-26	nucleotide kinase	other
UniRef90	UHGV-1874583_46	UniRef90_A0A173Z9D7	111.0	2.28e-30	N/A	N/A
eggNOG-mapper	UHGV-1874583_46	742740.HMPREF9474_02311	104.0	1.49e-28	N/A	N/A
Pfam	UHGV-1874583_46	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-1874583_47	phrog_2152	95.8	4.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-1874583_47	742740.HMPREF9474_02310	95.5	3.8e-22	N/A	N/A
Pfam	UHGV-1874583_47	PF19880	N/A	N/A	N/A	DUF6353