UHGV-1875001 (vOTU-073977)

Viral Genome: UHGV-1875001

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1875001
vOTU ID	vOTU-073977
Representative Genome?	Yes
Source	DEVoC
Original genome ID	ViralSequence394
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.48
Jumbo phage	No

Genome content
Genome length (bp)	43,004
GC content	53.66%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	80
CDS density	93%
Average CDS length (bps)	499.39
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1875001_1	phrog_4433	146.3	2.20004e-43	N/A	unknown function
UniRef90	UHGV-1875001_1	UniRef90_A0A6M5C839	95.9	4.88e-22	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-1875001_1	767434.Fraau_1460	99.4	2.09e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1875001_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1875001_6	PF10548	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1875001_7	760568.Desku_0919	112.0	2.01e-28	N/A	N/A
structural_annotation	UHGV-1875001_7	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1875001_8	1235835.C814_03153	74.7	5.02e-17	N/A	N/A
structural_annotation	UHGV-1875001_8	PF09035,NF040990	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1875001_9	405948.SACE_5483	50.1	0.00000403	domain, Protein	N/A
Pfam	UHGV-1875001_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1875001_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1875001_9	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1875001_10	1216932.CM240_0696	73.6	0.000000000000439	N/A	N/A
structural_annotation	UHGV-1875001_10	PF03965,MF_01819,NF012168,COG3682	N/A	N/A	N/A	N/A
UniRef90	UHGV-1875001_11	UniRef90_A0A3D3Y0G5	114.0	5.08e-30	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1875001_11	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1875001_12	PF13601,TIGR04176,COG1846	N/A	N/A	N/A	N/A
Pfam	UHGV-1875001_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1875001_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1875001_16	PF12844	N/A	N/A	N/A	N/A
KOfam	UHGV-1875001_17	K14059	132.5	5.1e-39	int; integrase	N/A
PHROG	UHGV-1875001_17	phrog_1	144.8	6.89439e-43	integrase	integration and excision
UniRef90	UHGV-1875001_17	UniRef90_UPI00195CC1EE	380.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1875001_17	1235835.C814_03141	194.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1875001_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1875001_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1875001_17	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1875001_18	1226322.HMPREF1545_00079	108.0	2.8e-29	N/A	N/A
structural_annotation	UHGV-1875001_19	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_20	phrog_20016	187.0	0	N/A	unknown function
UniRef90	UHGV-1875001_20	UniRef90_A0A285PT46	192.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1875001_20	1226322.HMPREF1545_00077	171.0	0	N/A	N/A
structural_annotation	UHGV-1875001_20	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_22	phrog_16490	122.4	5.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-1875001_22	1408437.JNJN01000043_gene803	129.0	5.96e-34	N/A	N/A
PHROG	UHGV-1875001_23	phrog_22984	76.9	6.2e-23	N/A	unknown function
PHROG	UHGV-1875001_24	phrog_21718	102.1	4.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-1875001_24	397290.C810_05210	60.1	0.00000000421	N/A	N/A
PHROG	UHGV-1875001_25	phrog_3754	94.0	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-1875001_25	476272.RUMHYD_01764	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-1875001_26	1384065.JAGS01000001_gene2489	52.4	0.0000000214	N/A	N/A
structural_annotation	UHGV-1875001_26	PF10723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1875001_31	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_32	phrog_14030	145.6	2.90069e-43	N/A	unknown function
UniRef90	UHGV-1875001_32	UniRef90_R6LL81	246.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1875001_32	1121866.AUGK01000003_gene1444	95.1	1.08e-19	amidase activity	N/A
COG	UHGV-1875001_32	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1875001_33	phrog_6918	97.2	9.9e-29	holin	lysis
UniRef90	UHGV-1875001_33	UniRef90_A0A316QCY7	103.0	1.73e-26	Holin	N/A
eggNOG-mapper	UHGV-1875001_33	1297617.JPJD01000020_gene301	101.0	1.21e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1875001_33	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1875001_33	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_34	phrog_355	59.1	7.5e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1875001_34	UniRef90_UPI0019572D92	149.0	5.60519e-45	N/A	N/A
eggNOG-mapper	UHGV-1875001_34	397290.C810_05229	139.0	1.56007e-41	N/A	N/A
structural_annotation	UHGV-1875001_34	PF14359	N/A	N/A	N/A	N/A
Pfam	UHGV-1875001_37	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-1875001_37	PF07484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1875001_38	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_39	phrog_18725	99.1	4.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-1875001_39	693746.OBV_18220	137.0	4.77e-39	N/A	N/A
PHROG	UHGV-1875001_40	phrog_13879	181.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1875001_40	1122919.KB905559_gene1344	160.0	1.4e-40	N/A	N/A
structural_annotation	UHGV-1875001_40	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1875001_41	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_42	phrog_6900	266.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1875001_42	1123312.KB904569_gene357	318.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1875001_42	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1875001_42	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_44	phrog_18646	62.4	8e-18	N/A	unknown function
UniRef90	UHGV-1875001_44	UniRef90_B6CXF0	72.0	0.0000000000000746	Peptidase-colicin	N/A
PHROG	UHGV-1875001_45	phrog_885	78.2	9e-23	major tail protein	tail
UniRef90	UHGV-1875001_45	UniRef90_A0A843J9F0	215.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1875001_45	1504822.CCNO01000012_gene492	245.0	0	N/A	N/A
structural_annotation	UHGV-1875001_45	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1875001_46	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_47	phrog_17977	78.6	5.6e-23	N/A	unknown function
UniRef90	UHGV-1875001_47	UniRef90_UPI00141211AB	115.0	7.02e-31	head-tail adaptor protein	N/A
structural_annotation	UHGV-1875001_47	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_49	phrog_544	130.3	1e-38	major head protein	head and packaging
UniRef90	UHGV-1875001_49	UniRef90_A0A1C6B5R0	592.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1875001_49	1232453.BAIF02000011_gene3359	367.0	0	N/A	N/A
Pfam	UHGV-1875001_49	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1875001_49	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_50	phrog_194	44.3	0.0000000000032	head scaffolding protein	head and packaging
UniRef90	UHGV-1875001_50	UniRef90_A0A6B9SU02	154.0	8.68805e-44	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-1875001_50	476272.RUMHYD_01775	59.7	0.0000000251	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-1875001_50	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_51	phrog_5	81.6	1.2e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-1875001_51	UniRef90_UPI0018AA0B5A	193.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1875001_51	1280685.AUKC01000004_gene1630	110.0	1.77e-29	N/A	N/A
Pfam	UHGV-1875001_51	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1875001_51	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1875001_51	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
KOfam	UHGV-1875001_53	K11044	79.1	2.8e-23	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-1875001_53	phrog_595	165.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1875001_53	UniRef90_A0A810PSD3	449.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1875001_53	1504822.CCNO01000013_gene286	216.0	0	cell adhesion	N/A
Pfam	UHGV-1875001_53	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-1875001_53	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
NCBIFam	UHGV-1875001_53	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1875001_53	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1875001_53	PF03496,PF04233,MF_04142,NF040688,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1875001_54	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_56	phrog_29409	43.8	0.0000000000029	N/A	unknown function
PHROG	UHGV-1875001_57	phrog_37900	318.4	0	N/A	unknown function
UniRef90	UHGV-1875001_57	UniRef90_UPI001C3EA4DF	342.0	0	N/A	N/A
eggNOG-mapper	UHGV-1875001_57	552398.HMPREF0866_03098	247.0	0	N/A	N/A
Pfam	UHGV-1875001_57	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1875001_57	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1875001_57	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1875001_58	411471.SUBVAR_06929	318.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1875001_58	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-1875001_60	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_61	phrog_64	156.7	0	portal protein	head and packaging
UniRef90	UHGV-1875001_61	UniRef90_UPI001AA0B7FF	501.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1875001_61	673376.F2VHW1_9CAUD	217.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1875001_61	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1875001_61	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1875001_62	K06909	132.7	3.5e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1875001_62	phrog_10250	158.3	0	N/A	unknown function
UniRef90	UHGV-1875001_62	UniRef90_UPI0018A99FCF	609.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1875001_62	476272.RUMHYD_01756	452.0	0	N/A	N/A
Pfam	UHGV-1875001_62	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1875001_62	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1875001_62	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1875001_62	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1875001_62	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1875001_63	K07474	105.4	1e-30	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1875001_63	phrog_51	113.5	1.5e-33	terminase small subunit	head and packaging
UniRef90	UHGV-1875001_63	UniRef90_A0A396NMY4	130.0	1.98e-36	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1875001_63	476272.RUMHYD_01754	125.0	4.3e-35	Terminase small subunit	N/A
Pfam	UHGV-1875001_63	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1875001_63	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1875001_63	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1875001_64	PF10922,MF_00839	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1875001_65	742738.HMPREF9460_02503	91.3	9.69e-23	N/A	N/A
structural_annotation	UHGV-1875001_65	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_69	phrog_1770	56.0	7.7e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1875001_69	536233.CLO_1822	153.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1875001_69	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
Pfam	UHGV-1875001_71	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1875001_71	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_73	phrog_38832	55.3	5.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-1875001_73	1232443.BAIA02000078_gene48	116.0	6.67e-33	N/A	N/A
structural_annotation	UHGV-1875001_73	PF09629	N/A	N/A	N/A	N/A
KOfam	UHGV-1875001_74	K00558	159.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1875001_74	phrog_363	245.4	0	DNA methyltransferase	other
UniRef90	UHGV-1875001_74	UniRef90_G4KRB8	339.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1875001_74	693746.OBV_01900	339.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1875001_74	MTase_II_00058	120.6	7.9e-36	Type II methyltransferase	RM
Pfam	UHGV-1875001_74	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1875001_74	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1875001_74	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1875001_74	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_76	phrog_16304	56.7	3.6e-16	N/A	unknown function
UniRef90	UHGV-1875001_76	UniRef90_A0A3D3Y5P0	220.0	0	N/A	N/A
Pfam	UHGV-1875001_76	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1875001_76	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_77	phrog_378	99.3	4.3e-29	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1875001_77	UniRef90_UPI001E43F9BA	71.6	0.000000000000791	N/A	N/A
eggNOG-mapper	UHGV-1875001_77	1423732.BALS01000134_gene393	65.5	0.0000000000437	N/A	N/A
structural_annotation	UHGV-1875001_77	PF05037,NF004948	N/A	N/A	N/A	N/A
UniRef90	UHGV-1875001_78	UniRef90_A0A2Z4QA33	240.0	0	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-1875001_78	718252.FP2_01050	129.0	9.24e-35	N/A	N/A
structural_annotation	UHGV-1875001_78	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_79	phrog_124	114.2	1.1e-33	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1875001_79	UniRef90_A0A2Z4QBI4	394.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-1875001_79	445972.ANACOL_00146	220.0	0	AAA domain	N/A
Pfam	UHGV-1875001_79	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1875001_79	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-1875001_79	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1875001_80	phrog_27197	92.2	3.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-1875001_80	394503.Ccel_3068	52.0	0.000000882	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1875001_80	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A