UHGV-1882847 (vOTU-058983)

Viral Genome: UHGV-1882847

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1882847
vOTU ID	vOTU-058983
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300006312\|Ga0099626_100576
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9681
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.31
Jumbo phage	No

Genome content
Genome length (bp)	35,341
GC content	43.82%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	92%
Average CDS length (bps)	640.35
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1882847_1	K03111	120.9	1.7e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1882847_1	phrog_44	126.8	1.5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1882847_1	UniRef90_UPI001961C9E0	220.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1882847_1	97138.C820_02339	149.0	2.10195e-44	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1882847_1	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1882847_1	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1882847_1	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1882847_1	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1882847_1	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_4	phrog_7566	88.6	4.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1882847_4	97139.C824_05985	69.3	0.00000000000068	N/A	N/A
PHROG	UHGV-1882847_5	phrog_3584	185.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1882847_5	632245.CLP_2642	112.0	3.63e-27	N/A	N/A
structural_annotation	UHGV-1882847_5	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_7	phrog_24518	64.4	1.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1882847_7	1519439.JPJG01000077_gene922	64.7	0.000000000386	N/A	N/A
PHROG	UHGV-1882847_10	phrog_3	42.3	0.000000000027	transcriptional repressor	transcription regulation
UniRef90	UHGV-1882847_10	UniRef90_UPI001A9C15D9	95.5	7.35e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1882847_10	1540257.JQMW01000013_gene774	83.6	5.3e-20	N/A	N/A
Pfam	UHGV-1882847_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-1882847_11	K01356	157.5	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1882847_11	phrog_4	129.1	3.9e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-1882847_11	UniRef90_A0A7X5E0L6	231.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1882847_11	1121423.JONT01000002_gene2372	176.0	0	Peptidase S24-like	N/A
Pfam	UHGV-1882847_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1882847_11	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1882847_11	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1882847_11	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1882847_13	UniRef90_A0A352UR60	161.0	0	Nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-1882847_13	1203606.HMPREF1526_03104	127.0	2.65e-36	Nucleotidyltransferase substrate binding protein like	N/A
Pfam	UHGV-1882847_13	PF08780	N/A	N/A	Nucleotidyltransferase substrate binding protein like	NTase_sub_bind
NCBIFam	UHGV-1882847_13	TIGR01987.1	N/A	N/A	HI0074 family nucleotidyltransferase substrate-binding subunit	N/A
COG	UHGV-1882847_13	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A
structural_annotation	UHGV-1882847_13	PF08780,TIGR01987,COG2445	N/A	N/A	N/A	N/A
UniRef90	UHGV-1882847_14	UniRef90_A0A1M6V533	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-1882847_14	138119.DSY1815	102.0	2.69e-23	cell wall binding repeat	N/A
COG	UHGV-1882847_14	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
structural_annotation	UHGV-1882847_14	PF17118,MF_00612,NF002486,COG3012	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1882847_15	1410624.JNKK01000069_gene1367	136.0	9.54999e-41	N/A	N/A
UniRef90	UHGV-1882847_16	UniRef90_A0A3A8UJG3	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-1882847_16	657322.FPR_11180	140.0	1.40971e-42	N/A	N/A
Pfam	UHGV-1882847_16	PF13711	N/A	N/A	N/A	DUF4160
KOfam	UHGV-1882847_17	K06400	307.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1882847_17	phrog_95	327.3	0	integrase	integration and excision
UniRef90	UHGV-1882847_17	UniRef90_R6Q6C1	955.0	0	Resolvase N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1882847_17	1120998.AUFC01000016_gene36	384.0	0	resolvase	N/A
Pfam	UHGV-1882847_17	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1882847_17	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1882847_17	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1882847_17	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1882847_17	PF07508,NF041201	N/A	N/A	N/A	N/A
KOfam	UHGV-1882847_19	K06223	230.5	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1882847_19	phrog_56	199.1	0	DNA methyltransferase	other
UniRef90	UHGV-1882847_19	UniRef90_A0A0X1U7T3	333.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-1882847_19	97138.C820_00252	293.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1882847_19	MTase_II_00080	140.2	1.49995e-41	Type II methyltransferase	RM
Pfam	UHGV-1882847_19	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-1882847_19	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-1882847_19	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1882847_19	PF02086,TIGR00571,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_20	phrog_7540	54.4	0.000000000000002	N/A	unknown function
eggNOG-mapper	UHGV-1882847_20	887325.HMPREF0381_0348	147.0	3.37993e-41	N/A	N/A
PHROG	UHGV-1882847_21	phrog_6264	66.4	4.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-1882847_21	887325.HMPREF0381_0349	136.0	4.12e-40	N/A	N/A
KOfam	UHGV-1882847_22	K03496	167.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1882847_22	phrog_164	163.5	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1882847_22	UniRef90_UPI00195B0F05	454.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1882847_22	596329.HMPREF0631_1367	335.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-1882847_22	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1882847_22	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1882847_22	PF01656,MF_00355,NF041283,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1882847_23	K21471	48.3	0.00000000000024	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
UniRef90	UHGV-1882847_23	UniRef90_R6Q814	394.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-1882847_23	742735.HMPREF9467_02997	134.0	2.58e-35	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	N/A
COG	UHGV-1882847_23	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1882847_23	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_24	phrog_36029	145.2	2.39622e-43	N/A	unknown function
UniRef90	UHGV-1882847_24	UniRef90_A0A345BPS8	120.0	4.02e-33	Holin of superfamily 6	N/A
eggNOG-mapper	UHGV-1882847_24	411468.CLOSCI_01511	139.0	5.76004e-41	N/A	N/A
eggNOG-mapper	UHGV-1882847_25	428125.CLOLEP_01418	55.8	0.00000000768	N/A	N/A
eggNOG-mapper	UHGV-1882847_26	97138.C820_00591	50.8	0.000000341	N/A	N/A
PHROG	UHGV-1882847_27	phrog_1067	280.9	0	minor head protein	head and packaging
UniRef90	UHGV-1882847_27	UniRef90_A0A396NSB6	396.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1882847_27	1443125.Z962_p0068	235.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1882847_27	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1882847_27	PF13385	N/A	N/A	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
NCBIFam	UHGV-1882847_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1882847_27	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1882847_27	PF14594,PF04862,TIGR01665,TIGR04362,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_29	phrog_863	100.2	3e-29	tail fiber assembly	tail
UniRef90	UHGV-1882847_29	UniRef90_A0A136WG25	141.0	1.37e-34	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1882847_29	1321778.HMPREF1982_03560	77.0	0.00000000000363	N/A	N/A
Pfam	UHGV-1882847_29	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-1882847_29	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
COG	UHGV-1882847_29	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-1882847_29	PF10651,PF21722,NF032891,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_30	phrog_33	101.2	1.6e-29	distal tail protein Dit	tail
UniRef90	UHGV-1882847_30	UniRef90_A0A350TW29	256.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1882847_30	1540257.JQMW01000004_gene407	167.0	0	tail component	N/A
Pfam	UHGV-1882847_30	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-1882847_30	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1882847_30	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1882847_31	K10421	77.8	3.5e-23	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-1882847_31	phrog_23464	232.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1882847_31	33035.JPJF01000023_gene3232	231.0	0	phage tail tape measure protein	N/A
COG	UHGV-1882847_31	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1882847_31	PF02050	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_33	phrog_88	109.8	2.1e-32	major tail protein	tail
UniRef90	UHGV-1882847_33	UniRef90_G9YSC5	220.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1882847_33	411459.RUMOBE_00930	80.1	4.68e-16	N/A	N/A
NCBIFam	UHGV-1882847_33	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1882847_33	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_34	phrog_5	52.0	0.000000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-1882847_34	UniRef90_A0A1C6FG30	124.0	4.38e-33	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1882847_34	1235798.C817_04589	114.0	5.2e-30	N/A	N/A
Pfam	UHGV-1882847_34	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1882847_34	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1882847_34	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_35	phrog_78	47.4	0.00000000000036	tail terminator	connector
eggNOG-mapper	UHGV-1882847_35	1235798.C817_04588	125.0	3.74e-36	N/A	N/A
structural_annotation	UHGV-1882847_35	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_36	phrog_19734	95.1	6.4e-28	N/A	unknown function
UniRef90	UHGV-1882847_36	UniRef90_A0A3R6AW46	102.0	4.79e-26	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1882847_36	33035.JPJF01000039_gene275	101.0	2.38e-26	N/A	N/A
structural_annotation	UHGV-1882847_36	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_37	phrog_2550	85.2	3.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-1882847_37	1235798.C817_04586	108.0	1.13e-29	N/A	N/A
structural_annotation	UHGV-1882847_37	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_38	phrog_10	192.8	0	major head protein	head and packaging
UniRef90	UHGV-1882847_38	UniRef90_UPI001E346EE7	459.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1882847_38	642492.Clole_0744	409.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1882847_38	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1882847_38	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1882847_38	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1882847_38	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1882847_39	K06904	145.9	3.50325e-43	N/A	N/A
PHROG	UHGV-1882847_39	phrog_80	168.9	0	head maturation protease	head and packaging
UniRef90	UHGV-1882847_39	UniRef90_A0A8G1TPN9	298.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1882847_39	33035.JPJF01000039_gene272	298.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1882847_39	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1882847_39	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1882847_39	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1882847_39	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_40	phrog_12	172.5	0	portal protein	head and packaging
UniRef90	UHGV-1882847_40	UniRef90_A0A8G1TPJ1	573.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1882847_40	1235798.C817_04583	538.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1882847_40	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1882847_40	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1882847_40	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1882847_40	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_41	phrog_9	295.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1882847_41	UniRef90_A0A3D1FL87	919.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1882847_41	1235798.C817_04582	924.0	0	Phage Terminase	N/A
Pfam	UHGV-1882847_41	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1882847_41	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1882847_41	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1882847_41	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_42	phrog_361	95.9	3.4e-28	terminase small subunit	head and packaging
UniRef90	UHGV-1882847_42	UniRef90_A0A1Y4FAU6	151.0	5.60519e-45	Terminase	N/A
eggNOG-mapper	UHGV-1882847_42	1235798.C817_04581	155.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1882847_42	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1882847_42	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_43	phrog_119	53.9	0.0000000000000028	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1882847_43	UniRef90_A0A3E3ADS4	132.0	5.13e-38	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1882847_43	908340.HMPREF9406_2583	136.0	1.66001e-40	HNH nucleases	N/A
COG	UHGV-1882847_43	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1882847_44	phrog_36	79.4	5.2e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1882847_44	UniRef90_UPI00148B00F2	100.0	2.44e-24	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1882847_44	1235799.C818_04213	110.0	4.15e-29	sigma factor activity	N/A
COG	UHGV-1882847_44	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1882847_44	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1882847_45	phrog_6568	69.2	4.2e-20	N/A	unknown function
KOfam	UHGV-1882847_51	K00558	218.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1882847_51	phrog_116	265.9	0	DNA methyltransferase	other
UniRef90	UHGV-1882847_51	UniRef90_A0A810Q3U8	780.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1882847_51	1121334.KB911073_gene1852	783.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1882847_51	MTase_II_00020	101.4	3.8e-34	Type II methyltransferase	RM
Pfam	UHGV-1882847_51	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1882847_51	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1882847_51	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A