UHGV-1883317 (vOTU-058984)

Viral Genome: UHGV-1883317

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1883317
vOTU ID	vOTU-058984
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300006298\|Ga0099618_100303
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9768
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.67
Jumbo phage	No

Genome content
Genome length (bp)	39,987
GC content	37.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	93%
Average CDS length (bps)	653.68
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1883317_1	K02395	48.6	0.000000000000089	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1883317_1	phrog_3513	56.4	3.2e-16	endolysin	lysis
UniRef90	UHGV-1883317_1	UniRef90_R5ZWS5	466.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-1883317_1	1423724.BAMM01000042_gene2173	59.3	0.000000207	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1883317_1	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-1883317_1	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1883317_1	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1883317_1	PF08230,NF004974,COG1705	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_2	phrog_199	72.2	6e-21	holin	lysis
UniRef90	UHGV-1883317_2	UniRef90_A0A3B8UJ75	240.0	0	Holin	N/A
eggNOG-mapper	UHGV-1883317_2	483218.BACPEC_01140	214.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1883317_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1883317_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1883317_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1883317_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_5	phrog_2566	45.8	0.00000000000091	N/A	unknown function
PHROG	UHGV-1883317_6	phrog_6616	162.6	0	tail protein	tail
UniRef90	UHGV-1883317_6	UniRef90_A0A8D9PGP3	749.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1883317_6	1232453.BAIF02000058_gene1641	263.0	0	Phage minor structural protein	N/A
COG	UHGV-1883317_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1883317_6	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_7	phrog_1401	65.1	1e-18	N/A	unknown function
UniRef90	UHGV-1883317_7	UniRef90_UPI0007099B7A	68.2	0.00000000000485	N/A	N/A
eggNOG-mapper	UHGV-1883317_7	1294142.CINTURNW_1705	59.3	0.00000000216	N/A	N/A
structural_annotation	UHGV-1883317_7	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_8	phrog_1194	81.1	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1883317_8	33035.JPJF01000093_gene2242	153.0	0	N/A	N/A
structural_annotation	UHGV-1883317_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_9	phrog_1535	227.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1883317_9	UniRef90_A0A1C5PIN9	386.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1883317_9	33035.JPJF01000093_gene2243	332.0	0	phage tail tape measure protein	N/A
COG	UHGV-1883317_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1883317_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_10	phrog_8355	117.5	2.4e-35	N/A	unknown function
UniRef90	UHGV-1883317_10	UniRef90_UPI0006BBA9AA	175.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1883317_10	1117108.PAALTS15_13522	117.0	2.33e-32	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1883317_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1883317_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_11	phrog_8300	66.3	4.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-1883317_11	1151292.QEW_2425	59.3	0.000000000613	N/A	N/A
structural_annotation	UHGV-1883317_11	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_12	phrog_820	117.7	6.8e-35	major tail protein	tail
UniRef90	UHGV-1883317_12	UniRef90_T3DDR1	171.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-1883317_12	1151292.QEW_2426	171.0	0	N/A	N/A
structural_annotation	UHGV-1883317_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_13	phrog_2595	79.6	3.4e-23	head-tail connector protein	connector
UniRef90	UHGV-1883317_13	UniRef90_UPI001D068DAC	136.0	9.25e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-1883317_13	742740.HMPREF9474_03510	124.0	7.84e-35	N/A	N/A
Pfam	UHGV-1883317_13	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1883317_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_14	phrog_556	59.1	6.7e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-1883317_14	742740.HMPREF9474_03509	142.0	8.75952e-42	N/A	N/A
structural_annotation	UHGV-1883317_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_15	phrog_8710	124.3	4.4e-37	N/A	unknown function
eggNOG-mapper	UHGV-1883317_15	33035.JPJF01000093_gene2249	108.0	1.71e-29	N/A	N/A
structural_annotation	UHGV-1883317_15	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_16	phrog_541	67.4	2.1e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-1883317_16	1304866.K413DRAFT_0783	149.0	7.00649e-45	N/A	N/A
PHROG	UHGV-1883317_17	phrog_422	260.0	0	major head protein	head and packaging
UniRef90	UHGV-1883317_17	UniRef90_A0A3D5M0U8	503.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1883317_17	663278.Ethha_1589	378.0	0	N/A	N/A
structural_annotation	UHGV-1883317_17	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_18	phrog_2303	139.1	3.00004e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1883317_18	483218.BACPEC_01156	134.0	2.6e-36	N/A	N/A
PHROG	UHGV-1883317_19	phrog_872	163.3	0	N/A	unknown function
UniRef90	UHGV-1883317_19	UniRef90_UPI0018C70BF8	205.0	0	N/A	N/A
eggNOG-mapper	UHGV-1883317_19	573413.Spirs_2170	169.0	0	N/A	N/A
Pfam	UHGV-1883317_19	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1883317_19	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1883317_19	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_21	phrog_581	242.2	0	minor head protein	head and packaging
UniRef90	UHGV-1883317_21	UniRef90_A0A413YU28	642.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1883317_21	33035.JPJF01000093_gene2255	439.0	0	N/A	N/A
Pfam	UHGV-1883317_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1883317_21	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1883317_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_22	phrog_533	285.2	0	portal protein	head and packaging
UniRef90	UHGV-1883317_22	UniRef90_A0A413YU90	937.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1883317_22	33035.JPJF01000093_gene2257	543.0	0	N/A	N/A
structural_annotation	UHGV-1883317_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1883317_23	K06909	97.5	1.7e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1883317_23	phrog_2	72.2	1.1e-20	terminase large subunit	head and packaging
UniRef90	UHGV-1883317_23	UniRef90_A0A413YU24	945.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1883317_23	1294142.CINTURNW_1023	521.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1883317_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1883317_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1883317_23	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1883317_24	K07474	151.9	5.60519e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1883317_24	phrog_51	160.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-1883317_24	UniRef90_A0A413YU49	367.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1883317_24	1499683.CCFF01000014_gene3916	149.0	9.94922e-43	Terminase small subunit	N/A
Pfam	UHGV-1883317_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1883317_24	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1883317_24	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_25	phrog_36	60.2	3.7e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1883317_25	397290.C810_01391	104.0	1.65e-26	N/A	N/A
structural_annotation	UHGV-1883317_25	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_26	phrog_625	68.2	7.5e-20	N/A	unknown function
UniRef90	UHGV-1883317_26	UniRef90_A0A413YU40	237.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1883317_26	397290.C810_01502	125.0	1.7e-35	N/A	N/A
structural_annotation	UHGV-1883317_26	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_28	phrog_2118	123.5	1.7e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1883317_28	UniRef90_R5ZJF1	281.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1883317_28	610130.Closa_0730	132.0	7.02e-38	HNH endonuclease	N/A
Pfam	UHGV-1883317_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1883317_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-1883317_30	UniRef90_UPI001D072F7E	60.5	0.0000000505	N/A	N/A
eggNOG-mapper	UHGV-1883317_30	397290.C810_01492	77.0	0.00000000000000264	N/A	N/A
KOfam	UHGV-1883317_33	K00558	231.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1883317_33	phrog_116	267.4	0	DNA methyltransferase	other
UniRef90	UHGV-1883317_33	UniRef90_A0A356C6K5	812.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1883317_33	1235800.C819_02255	650.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1883317_33	MTase_II_00020	116.7	5.5e-37	Type II methyltransferase	RM
Pfam	UHGV-1883317_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1883317_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1883317_33	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1883317_34	K07319	90.0	1.5e-26	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1883317_34	phrog_16	226.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1883317_34	UniRef90_A0A356C6C6	1498.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-1883317_34	1298920.KI911353_gene2709	1392.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1883317_34	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1883317_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1883317_34	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1883317_34	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_36	phrog_7566	95.1	4.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-1883317_36	1235800.C819_00511	105.0	2.02e-26	N/A	N/A
structural_annotation	UHGV-1883317_38	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-1883317_39	K03469	68.1	1.7e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1883317_39	phrog_531	64.6	1.7e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1883317_39	UniRef90_A0A413YU26	268.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1883317_39	941824.TCEL_01720	77.0	8.72e-16	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1883317_39	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1883317_39	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1883317_39	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_40	phrog_3584	241.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1883317_40	UniRef90_A0A4P8IFK4	345.0	0	N/A	N/A
eggNOG-mapper	UHGV-1883317_40	742741.HMPREF9475_00404	296.0	0	N/A	N/A
structural_annotation	UHGV-1883317_40	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-1883317_41	UniRef90_A0A356C6A4	154.0	0	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-1883317_41	318464.IO99_13850	65.5	0.000000000000379	Helix-turn-helix domain	N/A
Pfam	UHGV-1883317_41	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1883317_41	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1883317_41	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1883317_44	NF040556	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1883317_47	NF037954	N/A	N/A	N/A	N/A
UniRef90	UHGV-1883317_50	UniRef90_UPI00041C3C71	97.4	3.73e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1883317_50	1120998.AUFC01000030_gene2205	97.4	4.77e-26	Helix-turn-helix	N/A
Pfam	UHGV-1883317_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1883317_50	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1883317_51	K22300	62.5	9.4e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1883317_51	phrog_8	66.4	6.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1883317_51	UniRef90_A0A3A9CUU7	150.0	3.36312e-44	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1883317_51	1120998.AUFC01000030_gene2204	117.0	1.6e-31	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1883317_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1883317_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1883317_51	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_52	phrog_87	80.0	2.4e-23	metallo-protease	other
UniRef90	UHGV-1883317_52	UniRef90_A0A373INP4	202.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1883317_52	397288.C806_00132	196.0	0	Zn peptidase	N/A
Pfam	UHGV-1883317_52	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1883317_52	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1883317_52	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1883317_53	phrog_1847	512.0	0	N/A	unknown function
UniRef90	UHGV-1883317_53	UniRef90_R9JJN1	484.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-1883317_53	1235792.C808_05258	484.0	0	N/A	N/A
Pfam	UHGV-1883317_53	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-1883317_53	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-1883317_53	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-1883317_53	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1883317_54	658655.HMPREF0988_00902	52.0	0.0000000102	N/A	N/A
PHROG	UHGV-1883317_55	phrog_2158	174.2	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1883317_55	UniRef90_UPI000E5D2F29	590.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-1883317_55	626523.GCWU000342_01051	241.0	0	Abi-like protein	N/A
PADLOC	UHGV-1883317_55	AbiD	126.9	3.5e-37	AbiD	Abi
Pfam	UHGV-1883317_55	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-1883317_55	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-1883317_55	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-1883317_57	K14059	222.0	0	int; integrase	N/A
PHROG	UHGV-1883317_57	phrog_1	209.1	0	integrase	integration and excision
UniRef90	UHGV-1883317_57	UniRef90_R6AKI6	815.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1883317_57	536233.CLO_0855	397.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-1883317_57	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1883317_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1883317_57	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1883317_57	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A