UHGV-1888793 (vOTU-078036)

Viral Genome: UHGV-1888793

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1888793
vOTU ID	vOTU-078036
Representative Genome?	Yes
Source	GFD
Original genome ID	GFD_23.6_NODE_67_length_41011_cov_10.057989
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.979
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.82
Jumbo phage	No

Genome content
Genome length (bp)	41,011
GC content	42.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	73
CDS density	94%
Average CDS length (bps)	525.58
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1888793_2	phrog_38	356.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1888793_2	UniRef90_A0A845QMQ7	662.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1888793_2	755731.Clo1100_2438	464.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-1888793_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1888793_2	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1888793_2	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1888793_2	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1888793_2	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_4	phrog_156	78.4	1.8e-23	portal protein	head and packaging
eggNOG-mapper	UHGV-1888793_4	1232449.BAHV02000016_gene1822	427.0	0	N/A	N/A
structural_annotation	UHGV-1888793_4	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_6	phrog_267	89.7	3.3e-26	major head protein	head and packaging
UniRef90	UHGV-1888793_6	UniRef90_A0A7C6CNA9	156.0	1.11964e-42	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-1888793_6	665956.HMPREF1032_03906	326.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1888793_6	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1888793_7	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_9	phrog_3287	79.3	2.4e-23	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1888793_9	1232449.BAHV02000016_gene1816	240.0	0	N/A	N/A
structural_annotation	UHGV-1888793_9	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
Pfam	UHGV-1888793_11	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-1888793_11	PF21722	N/A	N/A	N/A	N/A
KOfam	UHGV-1888793_13	K18454	42.2	0.00000000001	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-1888793_13	phrog_18593	110.2	1.8e-32	N/A	unknown function
UniRef90	UHGV-1888793_13	UniRef90_A0A2Y9CAD1	127.0	2.14e-35	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1888793_13	552398.HMPREF0866_03095	112.0	1.72e-29	N/A	N/A
Pfam	UHGV-1888793_13	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1888793_13	PF14600	N/A	N/A	N/A	N/A
Pfam	UHGV-1888793_14	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-1888793_14	TIGR02559	N/A	N/A	N/A	N/A
UniRef90	UHGV-1888793_15	UniRef90_A0A845QMU2	590.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1888793_15	1408437.JNJN01000060_gene452	345.0	0	heme binding	N/A
COG	UHGV-1888793_15	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-1888793_15	PF18857,PF18798	N/A	N/A	N/A	N/A
KOfam	UHGV-1888793_16	K08640	69.6	8.4e-20	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1888793_16	phrog_894	56.0	7.2e-16	endolysin	lysis
UniRef90	UHGV-1888793_16	UniRef90_A0A3B8P2A9	60.5	0.00000000897	Peptidase M15	N/A
eggNOG-mapper	UHGV-1888793_16	390235.PputW619_1627	55.5	0.000000119	peptidase M15A	N/A
Pfam	UHGV-1888793_16	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1888793_16	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1888793_16	PF08291,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_17	phrog_4105	45.7	0.0000000000011	N/A	unknown function
PHROG	UHGV-1888793_19	phrog_6918	53.5	0.0000000000000038	holin	lysis
Pfam	UHGV-1888793_19	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1888793_19	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-1888793_20	UniRef90_A0A843HPX3	87.8	1.55e-21	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1888793_20	1235790.C805_00057	51.2	0.0000000789	N/A	N/A
structural_annotation	UHGV-1888793_20	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_21	phrog_21718	53.4	0.0000000000000037	N/A	unknown function
eggNOG-mapper	UHGV-1888793_21	476272.RUMHYD_01768	53.5	0.00000015	N/A	N/A
PHROG	UHGV-1888793_23	phrog_16490	40.5	0.0000000000032	N/A	unknown function
eggNOG-mapper	UHGV-1888793_23	641112.ACOK01000103_gene525	95.5	1.3e-21	N/A	N/A
structural_annotation	UHGV-1888793_24	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-1888793_26	K14059	148.1	1.09301e-43	int; integrase	N/A
PHROG	UHGV-1888793_26	phrog_1	172.2	0	integrase	integration and excision
UniRef90	UHGV-1888793_26	UniRef90_A0A845QLR8	342.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1888793_26	936375.HMPREF1152_1040	217.0	0	Phage integrase family	N/A
Pfam	UHGV-1888793_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1888793_26	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1888793_26	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_28	phrog_20936	42.4	0.000000000012	N/A	unknown function
Pfam	UHGV-1888793_28	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1888793_28	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1888793_29	K22300	43.5	0.0000000000061	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1888793_29	phrog_8	69.5	7.3e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1888793_29	UniRef90_UPI000A3301B9	74.3	0.0000000000000079	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1888793_29	1300150.EMQU_2529	74.3	0.00000000000000147	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1888793_29	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1888793_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1888793_29	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_32	phrog_8	40.3	0.000000000071	transcriptional regulator	transcription regulation
UniRef90	UHGV-1888793_32	UniRef90_UPI0018AA5D9A	66.2	0.000000000000498	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1888793_32	1201292.DR75_1541	57.8	0.00000000017	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1888793_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1888793_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1888793_32	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1888793_35	K19449	40.1	0.000000000072	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	N/A
PHROG	UHGV-1888793_35	phrog_8	50.6	0.000000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-1888793_35	UniRef90_A0A807DIK3	64.7	0.00000000000582	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1888793_35	1121936.AUHI01000001_gene995	54.3	0.0000000117	transcriptional	N/A
Pfam	UHGV-1888793_35	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1888793_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1888793_35	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1888793_36	NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_38	phrog_22529	119.0	1.8e-35	N/A	unknown function
UniRef90	UHGV-1888793_38	UniRef90_R6EKT9	161.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1888793_38	457421.CBFG_00763	100.0	2.33e-23	3D domain protein	N/A
Pfam	UHGV-1888793_38	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1888793_38	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1888793_38	PF06725,MF_02071,NF040677,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-1888793_40	K00390	76.7	2.1e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1888793_40	phrog_424	161.7	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1888793_40	UniRef90_UPI001D097961	379.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1888793_40	742823.HMPREF9465_01257	316.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1888793_40	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1888793_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1888793_40	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_43	phrog_155	142.3	3.50044e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1888793_43	UniRef90_UPI001CF7F8A4	226.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1888793_43	386415.NT01CX_2192	177.0	0	ERF superfamily	N/A
Pfam	UHGV-1888793_43	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1888793_43	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_44	phrog_434	105.6	3.9e-31	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1888793_44	UniRef90_UPI001CF8591D	292.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1888793_44	1122146.AUHP01000010_gene1042	195.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1888793_44	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-1888793_44	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1888793_44	PF10926,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_45	phrog_72	57.4	2.1e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1888793_45	UniRef90_A0A8D9PDS2	121.0	9.74e-32	NinB protein	N/A
eggNOG-mapper	UHGV-1888793_45	445972.ANACOL_01825	144.0	1.88993e-41	N/A	N/A
structural_annotation	UHGV-1888793_45	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_46	phrog_7566	101.8	3.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-1888793_46	1304866.K413DRAFT_1198	102.0	1.96e-27	N/A	N/A
KOfam	UHGV-1888793_47	K03111	140.8	1.49995e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1888793_47	phrog_44	131.6	6e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1888793_47	UniRef90_R6E0A2	189.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1888793_47	1120998.AUFC01000019_gene325	164.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1888793_47	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1888793_47	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1888793_47	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1888793_47	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1888793_47	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1888793_48	K01160	41.1	0.000000000046	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1888793_48	phrog_1682	87.9	1.3e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1888793_48	UniRef90_R6DSN2	211.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1888793_48	1120985.AUMI01000019_gene2247	126.0	2.15e-35	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-1888793_48	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1888793_48	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1888793_48	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_49	phrog_2514	107.9	9.3e-32	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1888793_49	UniRef90_UPI001C1E0E19	193.0	0	GntR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1888793_49	646529.Desaci_3039	142.0	1.01e-38	Transcriptional regulator	N/A
COG	UHGV-1888793_49	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1888793_49	PF08222,NF033788,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-1888793_50	K02315	197.0	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1888793_50	phrog_50	178.6	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1888793_50	UniRef90_R6DSN6	312.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1888793_50	1256908.HMPREF0373_01003	184.0	0	N/A	N/A
Pfam	UHGV-1888793_50	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1888793_50	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1888793_50	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1888793_50	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-1888793_51	K00571	119.1	4.8e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1888793_51	phrog_67	101.5	4.6e-30	DNA methyltransferase	other
UniRef90	UHGV-1888793_51	UniRef90_UPI001D09885E	496.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1888793_51	658655.HMPREF0988_00878	470.0	0	DNA methylase	N/A
PADLOC	UHGV-1888793_51	MTase_II_00157	97.4	2.4e-28	Type II methyltransferase	RM
Pfam	UHGV-1888793_51	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1888793_51	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1888793_51	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1888793_55	PF09889,MF_00649	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_59	phrog_21026	63.9	3.3e-18	N/A	unknown function
structural_annotation	UHGV-1888793_60	PF13973	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_65	phrog_2118	110.7	1.5e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1888793_65	UniRef90_G4KQ95	144.0	3.75968e-42	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1888793_65	693746.OBV_25310	144.0	6.30584e-43	HNH endonuclease	N/A
Pfam	UHGV-1888793_65	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1888793_65	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1888793_65	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_66	phrog_13489	41.3	0.000000000027	N/A	unknown function
eggNOG-mapper	UHGV-1888793_66	1158601.I585_01174	68.6	0.000000000000127	N/A	N/A
PHROG	UHGV-1888793_68	phrog_1485	93.9	2.1e-27	N/A	unknown function
UniRef90	UHGV-1888793_68	UniRef90_A0A3S8RPB6	108.0	2.68e-28	N/A	N/A
eggNOG-mapper	UHGV-1888793_68	1444310.JANV01000096_gene3245	82.0	6.91e-18	N/A	N/A
Pfam	UHGV-1888793_68	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
structural_annotation	UHGV-1888793_68	PF07659	N/A	N/A	N/A	N/A
PHROG	UHGV-1888793_69	phrog_25385	67.3	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-1888793_69	411468.CLOSCI_00565	65.1	0.0000000000386	N/A	N/A
structural_annotation	UHGV-1888793_71	PF18066	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1888793_72	PF05263,TIGR01636	N/A	N/A	N/A	N/A