UHGV-1890081 (vOTU-076015)

Viral Genome: UHGV-1890081

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1890081
vOTU ID	vOTU-076015
Representative Genome?	Yes
Source	GFD
Original genome ID	GFD_7.1_NODE_59_length_48593_cov_19.488318
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.73 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9715
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.53
Jumbo phage	No

Genome content
Genome length (bp)	33,330
GC content	39.17%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	92%
Average CDS length (bps)	700.36
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1890081_1	phrog_15411	106.1	4e-31	N/A	unknown function
UniRef90	UHGV-1890081_1	UniRef90_A0A374DDR6	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-1890081_1	931276.Cspa_c26850	132.0	2.6e-36	N/A	N/A
Pfam	UHGV-1890081_1	PF13271	N/A	N/A	N/A	DUF4062
COG	UHGV-1890081_1	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-1890081_2	1235792.C808_01558	72.4	0.0000000000515	N/A	N/A
KOfam	UHGV-1890081_3	K14059	91.3	1.7e-26	int; integrase	N/A
PHROG	UHGV-1890081_3	phrog_1	114.3	1.5e-33	integrase	integration and excision
UniRef90	UHGV-1890081_3	UniRef90_A0A1G5CL52	795.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-1890081_3	693746.OBV_41260	182.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1890081_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1890081_3	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1890081_3	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1890081_4	UniRef90_UPI000E52DA24	736.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-1890081_4	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1890081_4	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_5	phrog_1914	146.9	1.20512e-43	N/A	unknown function
UniRef90	UHGV-1890081_5	UniRef90_A0A374NDM7	327.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1890081_5	1160721.RBI_I01604	166.0	0	N/A	N/A
Pfam	UHGV-1890081_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1890081_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1890081_5	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1890081_6	UniRef90_A0A373XLN2	277.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1890081_6	1235793.C809_00679	99.0	5.83e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1890081_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1890081_6	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1890081_7	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1890081_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1890081_7	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1890081_9	K00390	96.5	3e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1890081_9	phrog_424	121.1	8.9e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1890081_9	UniRef90_UPI001C034617	559.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1890081_9	1408437.JNJN01000032_gene2312	333.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1890081_9	BrxP_00001	81.5	3.9e-24	BrxP	BREX
Pfam	UHGV-1890081_9	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1890081_9	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1890081_9	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1890081_10	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_11	phrog_599	41.0	0.000000000038	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1890081_11	UniRef90_UPI0015F48AC0	153.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1890081_11	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1890081_11	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_12	phrog_6058	42.4	0.0000000000078	N/A	unknown function
structural_annotation	UHGV-1890081_12	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1890081_15	K03497	156.5	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1890081_15	phrog_6218	245.5	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1890081_15	UniRef90_UPI000E47CAB6	775.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-1890081_15	1160721.RBI_I01596	233.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1890081_15	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-1890081_15	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-1890081_15	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1890081_15	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1890081_16	K03427	43.6	0.0000000000034	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1890081_16	phrog_5696	212.2	0	N/A	unknown function
UniRef90	UHGV-1890081_16	UniRef90_UPI001B3C9C54	248.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1890081_16	397291.C804_06560	147.0	5.41994e-41	N-6 DNA Methylase	N/A
Pfam	UHGV-1890081_16	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1890081_16	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1890081_16	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_17	phrog_323	82.5	2e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1890081_17	UniRef90_UPI001C01CFF8	290.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1890081_17	394503.Ccel_3305	336.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-1890081_17	PF00249	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-binding
dbAPIS	UHGV-1890081_17	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1890081_17	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-1890081_18	K04763	204.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1890081_18	phrog_1	162.0	0	integrase	integration and excision
UniRef90	UHGV-1890081_18	UniRef90_UPI001B3C6404	381.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1890081_18	1235793.C809_01951	224.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1890081_18	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1890081_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1890081_18	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1890081_18	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1890081_19	K22300	52.3	0.000000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1890081_19	phrog_8	61.7	1.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1890081_19	UniRef90_A0A374N9T4	105.0	8.53e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1890081_19	935845.JADQ01000015_gene3206	79.0	6.44e-18	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1890081_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1890081_19	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1890081_19	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1890081_20	1519439.JPJG01000077_gene922	73.9	0.0000000000000119	N/A	N/A
PHROG	UHGV-1890081_21	phrog_824	144.3	3.79752e-43	N/A	unknown function
UniRef90	UHGV-1890081_21	UniRef90_A0A3D3D6C6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1890081_21	397288.C806_00096	157.0	0	VRR_NUC	N/A
Pfam	UHGV-1890081_21	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1890081_21	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_23	phrog_2118	118.7	5.2e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1890081_23	UniRef90_A0A374DVG7	239.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1890081_23	610130.Closa_0730	149.0	5.60519e-45	HNH endonuclease	N/A
Pfam	UHGV-1890081_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1890081_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1890081_23	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_24	phrog_8684	96.3	1.6e-28	N/A	unknown function
UniRef90	UHGV-1890081_24	UniRef90_A0A374DV44	173.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1890081_24	411477.PARMER_02066	79.0	9.2e-17	YopX protein	N/A
Pfam	UHGV-1890081_24	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1890081_24	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1890081_24	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_27	phrog_3584	148.5	4.34403e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1890081_27	1235800.C819_00515	71.6	0.00000000000514	N/A	N/A
structural_annotation	UHGV-1890081_27	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1890081_28	394503.Ccel_3053	53.1	0.000000489	N/A	N/A
structural_annotation	UHGV-1890081_28	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_29	phrog_119	71.8	9.9e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1890081_29	UniRef90_A0A412ULY9	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1890081_29	1158607.UAU_01026	101.0	1.45e-26	HNH endonuclease	N/A
Pfam	UHGV-1890081_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1890081_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1890081_30	phrog_5110	83.0	2.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1890081_30	UniRef90_A0A1M5U1D5	113.0	1.2e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1890081_30	1211817.CCAT010000053_gene2128	100.0	3.14e-26	N/A	N/A
Pfam	UHGV-1890081_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1890081_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_31	phrog_9	286.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1890081_31	UniRef90_A0A412UM03	1036.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1890081_31	86416.Clopa_0337	618.0	0	Phage Terminase	N/A
Pfam	UHGV-1890081_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1890081_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1890081_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1890081_31	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_32	phrog_12	97.3	1.3e-28	portal protein	head and packaging
UniRef90	UHGV-1890081_32	UniRef90_A0A412ULV9	751.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1890081_32	1415774.U728_1254	265.0	0	Phage portal protein	N/A
Pfam	UHGV-1890081_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1890081_32	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1890081_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1890081_32	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1890081_33	K01358	142.6	3.80032e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1890081_33	phrog_94	213.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1890081_33	UniRef90_A0A412ULU1	409.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1890081_33	86416.Clopa_0340	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1890081_33	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1890081_33	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1890081_33	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_34	phrog_10	121.4	1e-35	major head protein	head and packaging
UniRef90	UHGV-1890081_34	UniRef90_A0A412ULW9	719.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1890081_34	1211817.CCAT010000053_gene2132	328.0	0	Phage capsid family	N/A
Pfam	UHGV-1890081_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1890081_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1890081_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1890081_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_35	phrog_749	56.9	3.3e-16	N/A	unknown function
UniRef90	UHGV-1890081_35	UniRef90_A0A1G5CMX8	108.0	1.06e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1890081_35	1211817.CCAT010000053_gene2133	60.8	0.000000000103	N/A	N/A
PHROG	UHGV-1890081_36	phrog_19734	71.2	1.3e-20	N/A	unknown function
UniRef90	UHGV-1890081_36	UniRef90_UPI00057FE645	61.2	0.000000000812	phage head closure protein	N/A
eggNOG-mapper	UHGV-1890081_36	86416.Clopa_0343	62.4	0.0000000000584	N/A	N/A
structural_annotation	UHGV-1890081_36	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1890081_37	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1890081_38	UniRef90_UPI000E5564A4	266.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1890081_38	1235792.C808_00089	50.8	0.00000434	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1890081_38	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1890081_38	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_39	phrog_88	67.6	1.9e-19	major tail protein	tail
UniRef90	UHGV-1890081_39	UniRef90_A0A1G5CNS8	154.0	8.96831e-44	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1890081_39	1235790.C805_01798	60.8	0.0000000114	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1890081_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1890081_39	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1890081_40	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1890081_41	K20283	57.8	9.9e-19	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1890081_41	phrog_1272	240.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1890081_41	UniRef90_A0A412ULX0	1685.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1890081_41	588581.Cpap_1264	198.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1890081_41	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1890081_41	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1890081_41	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_42	phrog_33	83.1	5.9e-24	distal tail protein Dit	tail
UniRef90	UHGV-1890081_42	UniRef90_R6GVG8	91.3	2.04e-18	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-1890081_42	1160721.RBI_I01575	95.9	6.66e-21	Phage tail protein	N/A
COG	UHGV-1890081_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1890081_42	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1890081_43	phrog_1067	89.9	4.4e-27	minor head protein	head and packaging
UniRef90	UHGV-1890081_43	UniRef90_A0A1G5CPD2	147.0	1.06e-36	Phage minor structural protein, N-terminal region	N/A
NCBIFam	UHGV-1890081_43	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1890081_43	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1890081_44	UniRef90_A0A374N9Y2	187.0	0	N/A	N/A
structural_annotation	UHGV-1890081_44	PF10651	N/A	N/A	N/A	N/A