UHGV-1907603 (vOTU-163503)

Viral Genome: UHGV-1907603

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1907603
vOTU ID	vOTU-163503
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300000276\|EM166_1000721
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.77 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9823
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.5
Jumbo phage	No

Genome content
Genome length (bp)	28,117
GC content	41.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	89%
Average CDS length (bps)	478.96
Total tRNA genes	7
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1907603_1	K14059	166.8	0	int; integrase	N/A
PHROG	UHGV-1907603_1	phrog_1	166.8	0	integrase	integration and excision
UniRef90	UHGV-1907603_1	UniRef90_A0A3E4V887	738.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1907603_1	1232453.BAIF02000027_gene4194	453.0	0	Phage integrase family	N/A
Pfam	UHGV-1907603_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1907603_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1907603_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1907603_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_2	phrog_7115	150.4	4.2039e-45	N/A	unknown function
UniRef90	UHGV-1907603_2	UniRef90_UPI001CD3F351	243.0	0	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-1907603_2	471855.Shel_11460	146.0	1.02295e-43	Bacterial PH domain	N/A
Pfam	UHGV-1907603_2	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-1907603_2	PF08000,MF_00437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1907603_3	411461.DORFOR_00034	152.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-1907603_3	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-1907603_5	K18830	45.1	0.00000000000023	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-1907603_5	UniRef90_A0A2N5NVN2	231.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1907603_5	397290.C810_05152	127.0	1.95e-36	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1907603_5	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1907603_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1907603_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1907603_9	K07741	139.2	5.99994e-41	antB; anti-repressor protein	N/A
PHROG	UHGV-1907603_9	phrog_63	138.5	4.80001e-41	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1907603_9	UniRef90_UPI001D0477D9	488.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1907603_9	411470.RUMGNA_02184	476.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-1907603_9	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1907603_9	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1907603_9	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1907603_9	PF09669,PF03374,TIGR02681,COG3646	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1907603_10	1235790.C805_00014	48.9	0.000000271	N/A	N/A
PHROG	UHGV-1907603_11	phrog_36464	64.0	2.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1907603_11	411461.DORFOR_01136	66.2	0.00000000000017	N/A	N/A
structural_annotation	UHGV-1907603_11	PF09035	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_16	phrog_253	125.6	3e-37	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1907603_16	UniRef90_A7B3R2	284.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1907603_16	411470.RUMGNA_02192	284.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-1907603_16	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1907603_16	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_17	phrog_14970	285.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1907603_17	411470.RUMGNA_02193	276.0	0	double-strand break repair protein	N/A
COG	UHGV-1907603_17	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1907603_17	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_18	phrog_72	49.4	0.000000000000069	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1907603_18	411470.RUMGNA_02194	331.0	0	N/A	N/A
structural_annotation	UHGV-1907603_18	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_19	phrog_7566	62.5	4.4e-18	N/A	unknown function
UniRef90	UHGV-1907603_19	UniRef90_A0A2N5NVH0	253.0	0	Phosphoenolpyruvate carboxykinase	N/A
KOfam	UHGV-1907603_20	K01160	57.0	5.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1907603_20	phrog_140	134.2	6.50001e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1907603_20	UniRef90_A7B3R6	261.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1907603_20	411470.RUMGNA_02196	261.0	0	COG COG4570 Holliday junction resolvase	N/A
Pfam	UHGV-1907603_20	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1907603_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1907603_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_21	phrog_1163	230.3	0	N/A	unknown function
UniRef90	UHGV-1907603_21	UniRef90_A0A415S878	541.0	0	Replication protein	N/A
eggNOG-mapper	UHGV-1907603_21	1042163.BRLA_c031420	185.0	0	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1907603_21	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-1907603_21	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1907603_21	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1907603_21	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-1907603_21	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_22	phrog_2600	120.8	1.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-1907603_22	1178540.BA70_18565	181.0	0	N/A	N/A
KOfam	UHGV-1907603_24	K00390	95.0	3.5e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1907603_24	phrog_424	125.0	5.1e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1907603_24	UniRef90_A0A6N3DEG0	607.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1907603_24	1232452.BAIB02000007_gene1640	446.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1907603_24	BrxP_00001	66.6	6.3e-21	BrxP	BREX
Pfam	UHGV-1907603_24	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1907603_24	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1907603_24	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1907603_25	97139.C824_00033	56.2	0.00000000592	N/A	N/A
UniRef90	UHGV-1907603_30	UniRef90_A0A8B3BTL4	113.0	1.91e-29	N/A	N/A
eggNOG-mapper	UHGV-1907603_32	537007.BLAHAN_05459	231.0	0	N/A	N/A
PHROG	UHGV-1907603_34	phrog_36	59.5	7.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1907603_34	UniRef90_A7B3S5	251.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1907603_34	411470.RUMGNA_02205	251.0	0	Sigma-70, region 4	N/A
Pfam	UHGV-1907603_34	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1907603_34	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_35	phrog_309	204.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-1907603_35	UniRef90_A0A2N5PKF8	302.0	0	Transposase	N/A
eggNOG-mapper	UHGV-1907603_35	411470.RUMGNA_02210	207.0	0	transposase activity	N/A
Pfam	UHGV-1907603_35	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-1907603_35	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1907603_35	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1907603_36	K06909	82.5	5.8e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1907603_36	phrog_2	88.2	1.5e-25	terminase large subunit	head and packaging
UniRef90	UHGV-1907603_36	UniRef90_A7B3T0	869.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1907603_36	411470.RUMGNA_02211	869.0	0	N/A	N/A
Pfam	UHGV-1907603_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1907603_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1907603_36	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_37	phrog_533	338.6	0	portal protein	head and packaging
UniRef90	UHGV-1907603_37	UniRef90_A7B3T1	894.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1907603_37	411470.RUMGNA_02212	894.0	0	N/A	N/A
structural_annotation	UHGV-1907603_37	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_38	phrog_581	339.3	0	minor head protein	head and packaging
UniRef90	UHGV-1907603_38	UniRef90_UPI001EE14397	622.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1907603_38	411470.RUMGNA_02213	783.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1907603_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1907603_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1907603_38	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1907603_39	411470.RUMGNA_02214	184.0	0	N/A	N/A
structural_annotation	UHGV-1907603_39	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
UniRef90	UHGV-1907603_40	UniRef90_A0A174NC72	64.7	0.000000292	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1907603_40	411470.RUMGNA_02215	338.0	0	N/A	N/A
NCBIFam	UHGV-1907603_42	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1907603_42	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_43	phrog_194	108.2	8.9e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-1907603_43	UniRef90_A5KPA4	305.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1907603_43	411470.RUMGNA_02218	342.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1907603_43	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1907603_43	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_44	phrog_422	209.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1907603_44	411470.RUMGNA_02219	551.0	0	N/A	N/A
structural_annotation	UHGV-1907603_44	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_45	phrog_541	99.3	2.7e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-1907603_45	411470.RUMGNA_02220	220.0	0	N/A	N/A
PHROG	UHGV-1907603_46	phrog_3366	93.9	5.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-1907603_46	411470.RUMGNA_02221	229.0	0	N/A	N/A
Pfam	UHGV-1907603_46	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1907603_46	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_47	phrog_556	132.7	9.6e-40	minor head protein	head and packaging
UniRef90	UHGV-1907603_47	UniRef90_UPI001C8E2A32	205.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1907603_47	411470.RUMGNA_02222	212.0	0	N/A	N/A
structural_annotation	UHGV-1907603_47	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_48	phrog_3266	158.6	0	tail completion	connector
UniRef90	UHGV-1907603_48	UniRef90_UPI001F2730AA	137.0	7.77e-39	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-1907603_48	411470.RUMGNA_02223	270.0	0	N/A	N/A
structural_annotation	UHGV-1907603_48	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_49	phrog_3099	151.9	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-1907603_49	411470.RUMGNA_02224	289.0	0	N/A	N/A
structural_annotation	UHGV-1907603_49	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_50	phrog_4450	115.5	3e-34	N/A	unknown function
UniRef90	UHGV-1907603_50	UniRef90_A0A416RQL6	65.9	0.0000000000332	AP endonuclease	N/A
eggNOG-mapper	UHGV-1907603_50	411470.RUMGNA_02225	224.0	0	N/A	N/A
Pfam	UHGV-1907603_50	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-1907603_50	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_51	phrog_706	154.7	0	N/A	unknown function
UniRef90	UHGV-1907603_51	UniRef90_A7B3U5	359.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1907603_51	411470.RUMGNA_02226	359.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-1907603_51	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1907603_51	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1907603_52	phrog_1686	113.5	1.4e-33	tail length tape measure protein	tail
UniRef90	UHGV-1907603_52	UniRef90_A0A316MA27	219.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-1907603_52	411470.RUMGNA_02228	320.0	0	tape measure	N/A
Pfam	UHGV-1907603_52	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1907603_52	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1907603_52	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A