UHGV-1912336 (vOTU-117444)

Viral Genome: UHGV-1912336

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1912336
vOTU ID	vOTU-117444
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300000297\|EM338_1000609
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.4 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.12
Jumbo phage	No

Genome content
Genome length (bp)	28,093
GC content	60.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	93%
Average CDS length (bps)	620.57
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.4)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1912336_1	UniRef90_A0A3A6E2U3	112.0	1.5e-27	N/A	N/A
Pfam	UHGV-1912336_1	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1912336_2	PF17642	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_3	phrog_1067	293.0	0	minor head protein	head and packaging
UniRef90	UHGV-1912336_3	UniRef90_A0A316NPB5	502.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1912336_3	1123263.AUKY01000068_gene489	348.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1912336_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1912336_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1912336_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1912336_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_4	phrog_33	78.0	2e-22	distal tail protein Dit	tail
UniRef90	UHGV-1912336_4	UniRef90_A0A2X2UUQ3	162.0	0	Phage putative tail component	N/A
eggNOG-mapper	UHGV-1912336_4	994573.T472_0211980	97.1	1.01e-21	tail component	N/A
COG	UHGV-1912336_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1912336_4	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_5	phrog_6900	251.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1912336_5	UniRef90_A0A373CK98	303.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-1912336_5	1216932.CM240_0625	328.0	0	tape measure	N/A
COG	UHGV-1912336_5	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1912336_5	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_8	phrog_88	95.3	6.4e-28	major tail protein	tail
UniRef90	UHGV-1912336_8	UniRef90_A0A1C6CIL7	133.0	1.51e-34	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1912336_8	33035.JPJF01000039_gene278	70.5	0.00000000000295	N/A	N/A
NCBIFam	UHGV-1912336_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1912336_8	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_9	phrog_5	43.6	0.0000000000058	tail completion or Neck1 protein	connector
UniRef90	UHGV-1912336_9	UniRef90_A0A1C6FG30	129.0	3.88e-35	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1912336_9	908340.HMPREF9406_2573	127.0	2.2e-35	N/A	N/A
structural_annotation	UHGV-1912336_9	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1912336_10	999413.HMPREF1094_02005	83.6	2.78e-19	N/A	N/A
structural_annotation	UHGV-1912336_10	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_11	phrog_19734	117.1	9.9e-35	N/A	unknown function
UniRef90	UHGV-1912336_11	UniRef90_A0A6I7GNS7	127.0	4.12e-35	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1912336_11	349161.Dred_2602	88.2	7.31e-21	N/A	N/A
structural_annotation	UHGV-1912336_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_12	phrog_749	65.0	1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1912336_12	349161.Dred_2603	81.3	9.55e-19	N/A	N/A
PHROG	UHGV-1912336_13	phrog_10	124.7	1.1e-36	major head protein	head and packaging
UniRef90	UHGV-1912336_13	UniRef90_G9YSC0	683.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1912336_13	1235792.C808_00086	411.0	0	Phage capsid family	N/A
Pfam	UHGV-1912336_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1912336_13	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1912336_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1912336_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1912336_13	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1912336_14	K01358	128.2	8.7e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1912336_14	phrog_94	246.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1912336_14	UniRef90_A0A1Y4BT12	342.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1912336_14	349161.Dred_2605	303.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1912336_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1912336_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1912336_14	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_15	phrog_12	119.9	7.4e-36	portal protein	head and packaging
UniRef90	UHGV-1912336_15	UniRef90_G9YSB8	511.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1912336_15	610130.Closa_0742	291.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1912336_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1912336_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1912336_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1912336_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_16	phrog_9	241.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1912336_16	UniRef90_A0A6I7GGF0	894.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1912336_16	1235792.C808_00083	597.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1912336_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1912336_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1912336_16	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_17	phrog_5110	61.7	9.8e-18	terminase small subunit	head and packaging
UniRef90	UHGV-1912336_17	UniRef90_UPI00195E8788	120.0	3.66e-33	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1912336_17	1265845.PWEIH_00610	50.4	0.00000235	Phage terminase, small subunit	N/A
Pfam	UHGV-1912336_17	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1912336_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_18	phrog_119	70.8	1.7e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1912336_18	UniRef90_G9YSB5	150.0	4.2039e-45	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1912336_18	1235792.C808_00081	81.6	1.6e-18	HNH nucleases	N/A
Pfam	UHGV-1912336_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1912336_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-1912336_19	UniRef90_UPI001F232519	74.7	2.75e-16	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-1912336_19	1226322.HMPREF1545_00110	68.9	0.00000000000000866	Cysteine-rich KTR	N/A
Pfam	UHGV-1912336_19	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-1912336_19	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_20	phrog_3584	74.9	1.1e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1912336_20	693746.OBV_19950	247.0	0	N/A	N/A
structural_annotation	UHGV-1912336_20	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-1912336_29	K03497	81.4	1.7e-23	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1912336_29	phrog_27290	361.6	0	N/A	unknown function
UniRef90	UHGV-1912336_29	UniRef90_UPI0003130F10	305.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1912336_29	1007096.BAGW01000033_gene1613	305.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1912336_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1912336_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1912336_29	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-1912336_30	K03496	172.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1912336_30	phrog_164	132.8	2.7e-39	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1912336_30	UniRef90_UPI000318E277	264.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1912336_30	1007096.BAGW01000033_gene1614	254.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-1912336_30	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1912336_30	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1912336_30	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1912336_31	K02314	258.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1912336_31	phrog_19	213.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1912336_31	UniRef90_UPI00195856D7	387.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1912336_31	1226322.HMPREF1545_00095	253.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-1912336_31	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1912336_31	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1912336_31	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1912336_31	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_32	phrog_270	111.1	1.3e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1912336_32	UniRef90_UPI001F170B82	182.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1912336_32	742738.HMPREF9460_00851	174.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-1912336_32	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1912336_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1912336_34	phrog_6499	121.8	2.7e-36	transcriptional regulator	transcription regulation
UniRef90	UHGV-1912336_34	UniRef90_G9YL68	140.0	1.45e-39	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1912336_34	742738.HMPREF9460_00847	140.0	1.7e-40	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1912336_34	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1912336_34	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1912336_34	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1912336_35	K22300	60.0	5.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1912336_35	phrog_3	47.7	0.00000000000066	transcriptional repressor	transcription regulation
UniRef90	UHGV-1912336_35	UniRef90_UPI000F0D19B9	63.5	0.0000000000069	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1912336_35	1125712.HMPREF1316_2427	50.8	0.00000145	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1912336_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1912336_35	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1912336_35	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1912336_38	K02342	138.7	4.19997e-41	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1912336_38	phrog_192	133.0	1.6e-39	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1912336_38	UniRef90_A0A174XM30	145.0	1.36e-37	Exonuclease RNase T and DNA polymerase III	N/A
eggNOG-mapper	UHGV-1912336_38	655812.HMPREF0061_0582	128.0	6.08e-32	EXOIII	N/A
PADLOC	UHGV-1912336_38	cd06127	111.8	1e-32	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1912336_38	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-1912336_38	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-1912336_38	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-1912336_38	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1912336_40	TIGR04165,COG3478	N/A	N/A	N/A	N/A
KOfam	UHGV-1912336_41	K14059	148.8	5.74532e-44	int; integrase	N/A
PHROG	UHGV-1912336_41	phrog_1	146.9	1.59748e-43	integrase	integration and excision
UniRef90	UHGV-1912336_41	UniRef90_UPI001EDEB0AD	298.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1912336_41	1226322.HMPREF1545_00144	244.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1912336_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1912336_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1912336_41	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1912336_42	phrog_435	61.4	1.8e-17	endolysin	lysis
UniRef90	UHGV-1912336_42	UniRef90_A0A8D9PDS4	407.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-1912336_42	398512.JQKC01000005_gene5470	72.0	0.00000000000199	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1912336_42	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1912336_42	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A