UHGV-1922720 (vOTU-007557)

Viral Genome: UHGV-1922720

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1922720
vOTU ID	vOTU-007557
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300007657\|Ga0105536_100455
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.76 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.85
Jumbo phage	No

Genome content
Genome length (bp)	37,692
GC content	38.29%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	92%
Average CDS length (bps)	734.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1922720_1	K14059	45.0	0.000000000002	int; integrase	N/A
PHROG	UHGV-1922720_1	phrog_26960	79.9	3.7e-23	N/A	unknown function
UniRef90	UHGV-1922720_1	UniRef90_A0A351QWV4	118.0	6.39e-32	Core-binding (CB) domain-containing protein	N/A
eggNOG-mapper	UHGV-1922720_1	536233.CLO_0855	127.0	1.82e-33	Arm DNA-binding domain	N/A
Pfam	UHGV-1922720_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1922720_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-1922720_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-1922720_2	phrog_1847	341.8	0	N/A	unknown function
UniRef90	UHGV-1922720_2	UniRef90_A0A174S171	674.0	0	Membrane-bound metallopeptidase	N/A
eggNOG-mapper	UHGV-1922720_2	483218.BACPEC_01182	624.0	0	T5orf172	N/A
Pfam	UHGV-1922720_2	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-1922720_2	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1922720_2	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_3	phrog_20936	51.2	0.000000000000024	N/A	unknown function
UniRef90	UHGV-1922720_3	UniRef90_UPI0013E038FD	53.9	0.0000000656	ImmA/IrrE family metallo-endopeptidase	N/A
structural_annotation	UHGV-1922720_3	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1922720_4	K22299	64.2	3e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1922720_4	phrog_8	75.8	8.1e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1922720_4	UniRef90_A0A413YU20	253.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1922720_4	553973.CLOHYLEM_07297	89.4	2.29e-21	Transcriptional	N/A
PADLOC	UHGV-1922720_4	retron_type_VI_hth_cluster2_1	53.4	0.0000000000000052	N/A	Retron
Pfam	UHGV-1922720_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1922720_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1922720_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1922720_5	K07729	40.0	0.000000000081	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1922720_5	UniRef90_A0A413YU34	128.0	3.03e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1922720_5	706433.HMPREF9430_01294	80.5	5.6e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1922720_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1922720_6	COG1321	N/A	N/A	N/A	N/A
UniRef90	UHGV-1922720_7	UniRef90_A0A356C6A4	154.0	0	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-1922720_7	318464.IO99_13850	65.5	0.000000000000379	Helix-turn-helix domain	N/A
Pfam	UHGV-1922720_7	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1922720_7	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1922720_7	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_9	phrog_1499	271.6	0	N/A	unknown function
UniRef90	UHGV-1922720_9	UniRef90_A0A356C6H9	899.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1922720_9	742733.HMPREF9469_01850	611.0	0	DNA recombination	N/A
Pfam	UHGV-1922720_9	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1922720_9	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-1922720_9	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_10	phrog_3657	343.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1922720_10	1304866.K413DRAFT_3015	330.0	0	N/A	N/A
PHROG	UHGV-1922720_11	phrog_1227	255.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1922720_11	UniRef90_A0A356C6D2	547.0	0	N/A	N/A
eggNOG-mapper	UHGV-1922720_11	1304866.K413DRAFT_3016	401.0	0	N/A	N/A
Pfam	UHGV-1922720_11	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1922720_11	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1922720_11	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_12	phrog_7566	47.3	0.00000000000016	N/A	unknown function
UniRef90	UHGV-1922720_12	UniRef90_A0A373CFM5	107.0	1.94e-28	ClpX-type ZB domain-containing protein	N/A
eggNOG-mapper	UHGV-1922720_12	742733.HMPREF9469_01847	107.0	6.56e-29	N/A	N/A
KOfam	UHGV-1922720_13	K01160	50.3	0.000000000000067	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1922720_13	phrog_1682	82.5	6.5e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1922720_13	UniRef90_A0A6N7WNE3	189.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1922720_13	1304866.K413DRAFT_3018	133.0	1.7e-38	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1922720_13	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1922720_13	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1922720_14	796940.HMPREF9628_00167	88.2	4.23e-19	N/A	N/A
COG	UHGV-1922720_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-1922720_16	K07319	90.2	1.8e-26	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1922720_16	phrog_16	223.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1922720_16	UniRef90_A0A356C6C6	1493.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-1922720_16	1298920.KI911353_gene2709	1388.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1922720_16	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1922720_16	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1922720_16	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1922720_16	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1922720_17	K00558	232.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1922720_17	phrog_116	267.3	0	DNA methyltransferase	other
UniRef90	UHGV-1922720_17	UniRef90_A0A356C6K5	825.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1922720_17	1235800.C819_02255	650.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1922720_17	MTase_II_00020	116.1	7.9e-37	Type II methyltransferase	RM
Pfam	UHGV-1922720_17	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1922720_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1922720_17	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_20	phrog_2118	125.1	5.9e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1922720_20	UniRef90_R5ZJF1	263.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1922720_20	610130.Closa_0730	128.0	1.12e-36	HNH endonuclease	N/A
Pfam	UHGV-1922720_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1922720_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1922720_22	phrog_20593	68.0	9.1e-20	N/A	unknown function
AcrCatalog	UHGV-1922720_22	cluster_27421	39.7	0.000000289	NA	N/A
PHROG	UHGV-1922720_23	phrog_874	168.3	0	N/A	unknown function
UniRef90	UHGV-1922720_23	UniRef90_A0A6N7W7Q7	212.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1922720_23	411468.CLOSCI_00298	191.0	0	N/A	N/A
structural_annotation	UHGV-1922720_23	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_24	phrog_36	63.7	3.7e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1922720_24	397290.C810_01391	100.0	7.49e-25	N/A	N/A
structural_annotation	UHGV-1922720_24	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-1922720_25	K07474	149.6	2.94273e-44	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1922720_25	phrog_51	159.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-1922720_25	UniRef90_A0A413YU49	340.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1922720_25	1499683.CCFF01000014_gene3916	148.0	1.98984e-42	Terminase small subunit	N/A
Pfam	UHGV-1922720_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1922720_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1922720_25	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1922720_26	K06909	87.8	1.4e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1922720_26	phrog_2	64.8	1.9e-18	terminase large subunit	head and packaging
UniRef90	UHGV-1922720_26	UniRef90_A0A413YU24	952.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1922720_26	1294142.CINTURNW_1023	518.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1922720_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1922720_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1922720_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_27	phrog_533	283.9	0	portal protein	head and packaging
UniRef90	UHGV-1922720_27	UniRef90_A0A413YU90	942.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1922720_27	33035.JPJF01000093_gene2257	551.0	0	N/A	N/A
structural_annotation	UHGV-1922720_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_28	phrog_581	253.9	0	minor head protein	head and packaging
UniRef90	UHGV-1922720_28	UniRef90_A0A413YU28	657.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1922720_28	33035.JPJF01000093_gene2255	436.0	0	N/A	N/A
Pfam	UHGV-1922720_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1922720_28	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1922720_28	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_30	phrog_872	170.1	0	N/A	unknown function
UniRef90	UHGV-1922720_30	UniRef90_A0A413P9Z7	213.0	0	N/A	N/A
eggNOG-mapper	UHGV-1922720_30	573413.Spirs_2170	174.0	0	N/A	N/A
Pfam	UHGV-1922720_30	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1922720_30	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1922720_30	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_31	phrog_2303	139.1	3.09995e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1922720_31	483218.BACPEC_01156	134.0	2.6e-36	N/A	N/A
PHROG	UHGV-1922720_32	phrog_422	260.7	0	major head protein	head and packaging
UniRef90	UHGV-1922720_32	UniRef90_A0A3D5M0U8	505.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1922720_32	663278.Ethha_1589	377.0	0	N/A	N/A
structural_annotation	UHGV-1922720_32	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_33	phrog_8710	117.9	4.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-1922720_33	33035.JPJF01000093_gene2249	105.0	3.98e-28	N/A	N/A
structural_annotation	UHGV-1922720_33	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_34	phrog_556	58.4	1e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-1922720_34	742740.HMPREF9474_03509	142.0	6.16992e-42	N/A	N/A
UniRef90	UHGV-1922720_35	UniRef90_UPI00164BAA81	87.0	6.53e-20	minor capsid protein	N/A
eggNOG-mapper	UHGV-1922720_35	742740.HMPREF9474_03510	73.9	0.00000000000000144	N/A	N/A
eggNOG-mapper	UHGV-1922720_36	1123263.AUKY01000051_gene1075	47.8	0.00000286	N/A	N/A
PHROG	UHGV-1922720_37	phrog_820	113.7	1.1e-33	major tail protein	tail
UniRef90	UHGV-1922720_37	UniRef90_T3DDR1	176.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-1922720_37	1151292.QEW_2426	176.0	0	N/A	N/A
structural_annotation	UHGV-1922720_37	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_38	phrog_8300	67.0	2.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1922720_38	1151292.QEW_2425	59.3	0.000000000613	N/A	N/A
structural_annotation	UHGV-1922720_38	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_39	phrog_8355	75.3	4.6e-22	N/A	unknown function
UniRef90	UHGV-1922720_39	UniRef90_UPI0006BBA9AA	101.0	4.45e-26	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1922720_39	1151292.QEW_2424	97.8	3.26e-26	N/A	N/A
PHROG	UHGV-1922720_40	phrog_1535	230.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1922720_40	UniRef90_A0A1C5PIN9	386.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1922720_40	33035.JPJF01000093_gene2243	329.0	0	phage tail tape measure protein	N/A
COG	UHGV-1922720_40	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1922720_40	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_41	phrog_1194	81.1	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1922720_41	33035.JPJF01000093_gene2242	153.0	0	N/A	N/A
structural_annotation	UHGV-1922720_41	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_42	phrog_1401	64.0	2.3e-18	N/A	unknown function
UniRef90	UHGV-1922720_42	UniRef90_UPI0007099B7A	68.9	0.00000000000216	N/A	N/A
eggNOG-mapper	UHGV-1922720_42	1294142.CINTURNW_1705	59.7	0.00000000137	N/A	N/A
structural_annotation	UHGV-1922720_42	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_43	phrog_6616	164.4	0	tail protein	tail
UniRef90	UHGV-1922720_43	UniRef90_A0A356C4L7	760.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1922720_43	1499683.CCFF01000014_gene3896	274.0	0	Phage minor structural protein	N/A
COG	UHGV-1922720_43	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1922720_43	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1922720_44	phrog_2566	45.8	0.00000000000094	N/A	unknown function
PHROG	UHGV-1922720_46	phrog_199	71.4	1.1e-20	holin	lysis
UniRef90	UHGV-1922720_46	UniRef90_A0A356C4Q2	240.0	0	Holin	N/A
eggNOG-mapper	UHGV-1922720_46	483218.BACPEC_01140	211.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1922720_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1922720_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1922720_46	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1922720_46	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1922720_47	K07273	120.4	2.1e-35	acm; lysozyme	N/A
PHROG	UHGV-1922720_47	phrog_291	96.0	5.1e-28	endolysin	lysis
UniRef90	UHGV-1922720_47	UniRef90_A0A356C4L5	701.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-1922720_47	515620.EUBELI_01316	166.0	4.2039e-45	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-1922720_47	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1922720_47	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1922720_47	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1922720_47	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A