UHGV-1928222 (vOTU-023393)

Viral Genome: UHGV-1928222

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1928222
vOTU ID	vOTU-023393
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300007798\|Ga0105755_100785
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.45 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9746
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.1
Jumbo phage	No

Genome content
Genome length (bp)	30,441
GC content	50.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	89%
Average CDS length (bps)	562.06
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1928222_1	phrog_20016	216.3	0	N/A	unknown function
UniRef90	UHGV-1928222_1	UniRef90_A0A285PT46	183.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1928222_1	1226322.HMPREF1545_00077	223.0	0	N/A	N/A
structural_annotation	UHGV-1928222_1	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_2	phrog_28802	50.6	0.000000000000017	N/A	unknown function
KOfam	UHGV-1928222_3	K14059	92.9	5.6e-27	int; integrase	N/A
PHROG	UHGV-1928222_3	phrog_1	103.3	3e-30	integrase	integration and excision
UniRef90	UHGV-1928222_3	UniRef90_UPI0011AF8E34	261.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1928222_3	445972.ANACOL_01797	207.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1928222_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1928222_3	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1928222_3	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_6	phrog_87	85.7	3.6e-25	metallo-protease	other
UniRef90	UHGV-1928222_6	UniRef90_UPI001966F635	160.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1928222_6	717606.PaecuDRAFT_3093	95.9	3.76e-23	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1928222_6	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1928222_6	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1928222_6	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1928222_7	K22299	47.6	0.00000000000029	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1928222_7	phrog_8	54.1	0.0000000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-1928222_7	UniRef90_A0A2V2F7D3	153.0	3.36312e-44	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1928222_7	411460.RUMTOR_02056	79.0	3.14e-16	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1928222_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1928222_7	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
UniRef90	UHGV-1928222_8	UniRef90_A0A372V3V8	106.0	6.96e-29	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-1928222_8	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1928222_9	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1928222_15	742735.HMPREF9467_00844	68.6	0.0000000000581	N/A	N/A
PHROG	UHGV-1928222_16	phrog_4433	151.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1928222_16	665950.HMPREF1025_01373	119.0	1.29e-29	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1928222_16	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1928222_16	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_18	phrog_659	191.2	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928222_18	UniRef90_UPI0009E55993	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-1928222_18	1507.HMPREF0262_00431	225.0	0	N/A	N/A
Pfam	UHGV-1928222_18	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1928222_18	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_19	phrog_72	64.1	1.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928222_19	UniRef90_A0A8D9PDS2	119.0	6.62e-31	NinB protein	N/A
eggNOG-mapper	UHGV-1928222_19	445972.ANACOL_01825	129.0	8.67e-36	N/A	N/A
Pfam	UHGV-1928222_19	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-1928222_19	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_20	phrog_7566	91.2	6.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-1928222_20	693746.OBV_25470	122.0	1.98e-34	N/A	N/A
KOfam	UHGV-1928222_21	K03111	139.2	4.49999e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1928222_21	phrog_44	138.4	4.80001e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928222_21	UniRef90_A0A316PHP0	206.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1928222_21	665956.HMPREF1032_00430	204.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1928222_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1928222_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1928222_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1928222_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1928222_21	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_22	phrog_2514	84.2	1.6e-24	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928222_22	UniRef90_UPI001EE2C20A	101.0	1.49e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1928222_22	665956.HMPREF1032_02617	259.0	0	Phage replisome organizer, N-terminal domain protein	N/A
COG	UHGV-1928222_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1928222_22	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1928222_23	K02314	251.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1928222_23	phrog_19	247.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928222_23	UniRef90_A0A0W7TNB4	522.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1928222_23	665956.HMPREF1032_02618	492.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1928222_23	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1928222_23	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1928222_23	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1928222_23	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
UniRef90	UHGV-1928222_24	UniRef90_UPI00122F0554	62.0	0.00000000544	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1928222_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1928222_24	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-1928222_25	K01160	52.0	0.00000000000002	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1928222_25	phrog_34	66.2	5.8e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928222_25	UniRef90_UPI0006D84EB7	157.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
COG	UHGV-1928222_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1928222_25	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1928222_27	K00558	122.0	6.6e-37	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1928222_27	phrog_363	195.0	0	DNA methyltransferase	other
UniRef90	UHGV-1928222_27	UniRef90_A0A1C6HIB8	290.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1928222_27	742738.HMPREF9460_04053	274.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1928222_27	MTase_II_00058	105.9	7.7e-31	Type II methyltransferase	RM
Pfam	UHGV-1928222_27	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1928222_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1928222_27	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1928222_28	UniRef90_A0A4D7ANR2	85.9	9.78e-20	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1928222_28	742738.HMPREF9460_04054	61.2	0.0000000000716	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-1928222_28	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_30	phrog_2245	62.0	1.2e-17	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-1928222_30	428125.CLOLEP_01814	85.1	7.31e-19	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-1928222_30	NF001611,COG1694	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1928222_31	1121335.Clst_0383	54.3	0.000000284	N/A	N/A
structural_annotation	UHGV-1928222_31	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_32	phrog_19458	315.8	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1928222_32	UniRef90_A0A7X5DCK0	226.0	0	LPD15 domain-containing protein	N/A
eggNOG-mapper	UHGV-1928222_32	657322.FPR_26770	367.0	0	N/A	N/A
COG	UHGV-1928222_32	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
UniRef90	UHGV-1928222_33	UniRef90_A0A2K4ZGQ9	63.5	0.0000000000256	DarA_C domain-containing protein	N/A
PHROG	UHGV-1928222_35	phrog_25027	68.4	6.7e-20	N/A	unknown function
UniRef90	UHGV-1928222_35	UniRef90_A0A1Y3RPR4	166.0	0	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-1928222_35	1399942.U3PBI8_9CAUD	77.4	7.86e-17	N/A	N/A
structural_annotation	UHGV-1928222_35	PF08401	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_37	phrog_2412	60.9	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1928222_37	1122981.AUME01000026_gene531	53.1	0.000000961	N/A	N/A
KOfam	UHGV-1928222_39	K21523	43.4	0.0000000000018	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1928222_39	phrog_2	101.2	1.7e-29	terminase large subunit	head and packaging
UniRef90	UHGV-1928222_39	UniRef90_UPI001F401ABC	685.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1928222_39	316274.Haur_1384	154.0	1.45e-38	N/A	N/A
Pfam	UHGV-1928222_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1928222_39	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1928222_39	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_40	phrog_156	233.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1928222_40	693746.OBV_23930	470.0	0	N/A	N/A
structural_annotation	UHGV-1928222_40	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_43	phrog_35275	73.1	3.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1928222_43	1226322.HMPREF1545_03846	69.7	0.0000000000844	N/A	N/A
PHROG	UHGV-1928222_44	phrog_24113	65.4	6.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-1928222_44	1226322.HMPREF1545_03847	61.6	0.000000000287	N/A	N/A
structural_annotation	UHGV-1928222_44	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_45	phrog_371	134.1	7.80001e-40	major head protein	head and packaging
UniRef90	UHGV-1928222_45	UniRef90_UPI001F183EB8	504.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-1928222_45	1226322.HMPREF1545_03848	273.0	0	N/A	N/A
Pfam	UHGV-1928222_45	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1928222_45	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_46	phrog_13046	52.3	0.0000000000000062	N/A	unknown function
eggNOG-mapper	UHGV-1928222_46	1232449.BAHV02000016_gene1817	111.0	4.11e-28	N/A	N/A
structural_annotation	UHGV-1928222_46	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1928222_47	phrog_3287	158.6	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1928222_47	665956.HMPREF1032_03917	741.0	0	N/A	N/A
structural_annotation	UHGV-1928222_47	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1928222_48	665956.HMPREF1032_03918	108.0	3.76e-26	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A