UHGV-1948684 (vOTU-077369)

Viral Genome: UHGV-1948684

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1948684
vOTU ID	vOTU-077369
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300008725\|Ga0115670_1000572
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.6
Jumbo phage	No

Genome content
Genome length (bp)	45,574
GC content	58.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	93%
Average CDS length (bps)	816.35
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1948684_1	K14059	66.0	7.9e-19	int; integrase	N/A
PHROG	UHGV-1948684_1	phrog_7685	53.0	0.0000000000000063	integrase	integration and excision
UniRef90	UHGV-1948684_1	UniRef90_K1TSB9	121.0	1.77e-34	Protein containing Integrase, catalytic core, phage domain protein (Fragment)	N/A
eggNOG-mapper	UHGV-1948684_1	411467.BACCAP_04089	117.0	3.38e-32	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1948684_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1948684_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-1948684_3	phrog_6244	45.4	0.0000000000018	N/A	unknown function
eggNOG-mapper	UHGV-1948684_3	1408437.JNJN01000003_gene1621	122.0	3.05e-35	N/A	N/A
PHROG	UHGV-1948684_4	phrog_6361	91.8	6.9e-27	N/A	unknown function
UniRef90	UHGV-1948684_4	UniRef90_A0A417NHX8	432.0	0	SprT-like family protein	N/A
eggNOG-mapper	UHGV-1948684_4	1378168.N510_01453	315.0	0	SprT-like family	N/A
Pfam	UHGV-1948684_4	PF10263	N/A	N/A	SprT-like family	SprT-like
COG	UHGV-1948684_4	COG3091	N/A	N/A	Predicted Zn-dependent metalloprotease, SprT family	N/A
structural_annotation	UHGV-1948684_4	PF10263,MF_00745,NF003339,COG3091	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_5	phrog_216	43.2	0.0000000000052	integrase	integration and excision
UniRef90	UHGV-1948684_5	UniRef90_R6TVN9	196.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1948684_5	1280679.ATVX01000032_gene27	150.0	5.32493e-44	Phage integrase family	N/A
Pfam	UHGV-1948684_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1948684_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-1948684_6	phrog_11420	54.9	0.0000000000000012	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1948684_6	UniRef90_UPI001106B43D	117.0	3.26e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1948684_6	1408438.JADD01000011_gene1530	51.2	0.000000262	Helix-turn-helix domain	N/A
Pfam	UHGV-1948684_6	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-1948684_6	PF13384	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_7	phrog_7566	99.9	1.1e-29	N/A	unknown function
UniRef90	UHGV-1948684_7	UniRef90_A0A8D9UHC0	122.0	7.4e-34	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1948684_7	1007096.BAGW01000031_gene114	139.0	4.69001e-41	N/A	N/A
PHROG	UHGV-1948684_8	phrog_3777	55.8	4.8e-16	N/A	unknown function
UniRef90	UHGV-1948684_8	UniRef90_UPI00130E0E41	86.7	1.41e-19	N/A	N/A
eggNOG-mapper	UHGV-1948684_8	1235798.C817_05872	63.2	0.000000000258	N/A	N/A
Pfam	UHGV-1948684_8	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-1948684_8	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-1948684_8	PF12957	N/A	N/A	N/A	N/A
KOfam	UHGV-1948684_10	K03111	112.3	7.3e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1948684_10	phrog_44	131.4	6.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1948684_10	UniRef90_UPI001106EC6F	150.0	2.38221e-44	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1948684_10	1519439.JPJG01000082_gene432	145.0	6.13769e-43	Single-strand binding protein family	N/A
Pfam	UHGV-1948684_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1948684_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1948684_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1948684_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1948684_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_12	phrog_30550	175.1	0	N/A	unknown function
UniRef90	UHGV-1948684_12	UniRef90_UPI001486382B	171.0	0	cell wall hydrolase	N/A
eggNOG-mapper	UHGV-1948684_12	1519439.JPJG01000077_gene920	138.0	1.77e-39	Cell Wall Hydrolase	N/A
structural_annotation	UHGV-1948684_12	TIGR02869	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1948684_13	PF18300,TIGR02228	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1948684_14	1203606.HMPREF1526_01870	46.2	0.00000423	N/A	N/A
PHROG	UHGV-1948684_15	phrog_322	89.2	3.5e-26	N/A	unknown function
UniRef90	UHGV-1948684_15	UniRef90_UPI000F705107	112.0	8.16e-28	Gp49 family protein	N/A
eggNOG-mapper	UHGV-1948684_15	278197.PEPE_0778	108.0	2.27e-28	N/A	N/A
Pfam	UHGV-1948684_15	PF13876	N/A	N/A	N/A	Phage_gp49_66
Pfam	UHGV-1948684_15	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1948684_15	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1948684_15	PF11195,PF13876	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1948684_16	PF09228	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_17	phrog_474	89.9	4.5e-26	phosphofructokinase	other
UniRef90	UHGV-1948684_17	UniRef90_A0A2V2EHL9	142.0	2.8096e-42	N/A	N/A
eggNOG-mapper	UHGV-1948684_17	1203606.HMPREF1526_00237	101.0	1.59e-26	N/A	N/A
Pfam	UHGV-1948684_17	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1948684_17	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_20	phrog_21980	47.7	0.00000000000002	N/A	unknown function
UniRef90	UHGV-1948684_20	UniRef90_UPI001C3EE9DB	145.0	1.72e-39	N/A	N/A
eggNOG-mapper	UHGV-1948684_20	931626.Awo_c11420	87.0	5.97e-17	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
Pfam	UHGV-1948684_20	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1948684_20	COG3209	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1948684_20	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_22	phrog_3584	236.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1948684_22	1519439.JPJG01000060_gene1883	321.0	0	N/A	N/A
structural_annotation	UHGV-1948684_22	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_23	phrog_3301	128.5	3.3e-38	pyrophosphatase	other
eggNOG-mapper	UHGV-1948684_23	1449050.JNLE01000003_gene3900	132.0	1.93e-37	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-1948684_23	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1948684_23	COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_24	phrog_27610	58.7	6.4e-17	N/A	unknown function
structural_annotation	UHGV-1948684_24	PF09465,COG5475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1948684_25	1226322.HMPREF1545_00288	111.0	1.2e-30	N/A	N/A
PHROG	UHGV-1948684_26	phrog_606	82.1	6.5e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1948684_26	UniRef90_A0A191ZDI3	66.2	0.0000000000657	Putative terminase small subunit	N/A
eggNOG-mapper	UHGV-1948684_26	1226322.HMPREF1545_03842	129.0	1.46e-35	DNA-packaging protein gp3	N/A
Pfam	UHGV-1948684_26	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1948684_26	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1948684_27	K06909	226.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1948684_27	phrog_3717	208.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1948684_27	UniRef90_H7BW36	1031.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1948684_27	1226322.HMPREF1545_03843	644.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1948684_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1948684_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1948684_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1948684_27	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_28	phrog_156	298.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1948684_28	1226322.HMPREF1545_03844	692.0	0	N/A	N/A
structural_annotation	UHGV-1948684_28	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_29	phrog_30605	44.2	0.0000000000026	N/A	unknown function
PHROG	UHGV-1948684_30	phrog_35275	168.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1948684_30	1226322.HMPREF1545_03846	140.0	2.42e-36	N/A	N/A
PHROG	UHGV-1948684_31	phrog_24113	181.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1948684_31	1226322.HMPREF1545_03847	172.0	0	N/A	N/A
structural_annotation	UHGV-1948684_31	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_32	phrog_371	158.2	0	major head protein	head and packaging
UniRef90	UHGV-1948684_32	UniRef90_A0A8F2JBL2	319.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-1948684_32	1226322.HMPREF1545_03848	553.0	0	N/A	N/A
Pfam	UHGV-1948684_32	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1948684_32	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_33	phrog_12105	115.6	2.8e-34	N/A	unknown function
eggNOG-mapper	UHGV-1948684_33	1226322.HMPREF1545_03850	106.0	4.37e-28	N/A	N/A
PHROG	UHGV-1948684_34	phrog_27373	42.0	0.0000000000067	tail protein	tail
eggNOG-mapper	UHGV-1948684_34	1007096.BAGW01000031_gene143	68.2	0.00000000065	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1948684_34	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-1948684_35	phrog_37900	332.1	0	N/A	unknown function
UniRef90	UHGV-1948684_35	UniRef90_UPI00110725F0	581.0	0	N/A	N/A
eggNOG-mapper	UHGV-1948684_35	1519439.JPJG01000060_gene1894	286.0	0	N/A	N/A
Pfam	UHGV-1948684_35	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
Pfam	UHGV-1948684_35	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1948684_35	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1948684_35	PF19789,PF19190,MF_04116,NF033639,COG1470	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_36	phrog_30516	45.2	0.0000000000011	N/A	unknown function
structural_annotation	UHGV-1948684_36	PF05635,NF008911	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_37	phrog_1423	115.4	5.7e-34	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1948684_37	UniRef90_H7BW22	357.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1948684_37	1410650.JHWL01000003_gene2820	186.0	0	Reverse transcriptase	N/A
COG	UHGV-1948684_37	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1948684_37	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_38	phrog_1423	73.7	2.6e-21	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1948684_38	UniRef90_A0A645D6N5	109.0	1.43e-27	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1948684_38	665950.HMPREF1025_01556	99.0	1.57e-22	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-1948684_38	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1948684_38	TIGR04416	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_39	phrog_18593	69.3	5.8e-20	N/A	unknown function
UniRef90	UHGV-1948684_39	UniRef90_A0A2V2GFC0	259.0	0	Chitinase	N/A
eggNOG-mapper	UHGV-1948684_39	552398.HMPREF0866_03095	234.0	0	N/A	N/A
Pfam	UHGV-1948684_39	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-1948684_40	phrog_1863	66.0	5.8e-20	N/A	unknown function
UniRef90	UHGV-1948684_40	UniRef90_UPI001F223E8B	83.2	2.56e-19	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1948684_40	1226322.HMPREF1545_04027	106.0	3.02e-29	N/A	N/A
eggNOG-mapper	UHGV-1948684_41	1203606.HMPREF1526_00254	86.7	7.5e-21	N/A	N/A
PHROG	UHGV-1948684_42	phrog_6918	117.8	3.9e-35	holin	lysis
UniRef90	UHGV-1948684_42	UniRef90_R6LQE1	148.0	2.38221e-44	Putative phage holin LL-H family	N/A
eggNOG-mapper	UHGV-1948684_42	552398.HMPREF0866_03092	144.0	2.17201e-43	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1948684_42	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1948684_42	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_43	phrog_14030	158.2	0	N/A	unknown function
UniRef90	UHGV-1948684_43	UniRef90_R6LL81	389.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1948684_43	1410631.JHWZ01000015_gene729	95.5	1.45e-19	N/A	N/A
PHROG	UHGV-1948684_44	phrog_1899	53.7	2.1e-16	N/A	unknown function
UniRef90	UHGV-1948684_44	UniRef90_UPI00110693DB	283.0	0	gp58-like family protein	N/A
eggNOG-mapper	UHGV-1948684_44	1226322.HMPREF1545_00783	123.0	4.27e-29	Chaperone of endosialidase	N/A
Pfam	UHGV-1948684_44	PF07902	N/A	N/A	gp58-like protein	Gp58
structural_annotation	UHGV-1948684_44	PF07902,NF041249	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1948684_45	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1948684_46	phrog_511	268.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1948684_46	1226322.HMPREF1545_00785	616.0	0	N/A	N/A
structural_annotation	UHGV-1948684_46	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1948684_47	1226322.HMPREF1545_00786	199.0	0	N/A	N/A
PHROG	UHGV-1948684_48	phrog_22978	397.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1948684_48	693746.OBV_23800	730.0	0	N/A	N/A
Pfam	UHGV-1948684_48	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-1948684_48	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
KOfam	UHGV-1948684_49	K05516	61.3	1.8e-17	cbpA; curved DNA-binding protein	N/A
UniRef90	UHGV-1948684_49	UniRef90_UPI001BB4762F	176.0	0	DnaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1948684_49	351348.Maqu_2299	109.0	4.53e-25	dextransucrase activity	N/A
Pfam	UHGV-1948684_49	PF00226	N/A	N/A	DnaJ domain	DnaJ
COG	UHGV-1948684_49	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-1948684_49	PF00226,PF20545,MF_00682,NF010870,COG2214,COG3126	N/A	N/A	N/A	N/A
KOfam	UHGV-1948684_50	K22300	48.8	0.00000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1948684_50	phrog_8	47.4	0.00000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-1948684_50	UniRef90_UPI001105B433	129.0	1.32e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1948684_50	1203606.HMPREF1526_01933	89.7	1.15e-22	helix-turn-helix	N/A
Pfam	UHGV-1948684_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1948684_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1948684_50	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1948684_51	K07482	292.9	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-1948684_51	phrog_4646	352.2	0	transposase	integration and excision
UniRef90	UHGV-1948684_51	UniRef90_UPI0011062A9C	403.0	0	IS30 family transposase	N/A
eggNOG-mapper	UHGV-1948684_51	411459.RUMOBE_01705	324.0	0	COG COG2826 Transposase and inactivated derivatives, IS30 family	N/A
Pfam	UHGV-1948684_51	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-1948684_51	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-1948684_51	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-1948684_51	PF03400,PF13384,NF033563,COG2826	N/A	N/A	N/A	N/A
KOfam	UHGV-1948684_52	K03529	449.7	0	smc; chromosome segregation protein	N/A
PHROG	UHGV-1948684_52	phrog_5836	151.3	1.12104e-44	N/A	unknown function
UniRef90	UHGV-1948684_52	UniRef90_A0A3D2HXI3	444.0	0	Chromosome segregation protein SMC (Fragment)	N/A
eggNOG-mapper	UHGV-1948684_52	411467.BACCAP_04646	410.0	0	Required for chromosome condensation and partitioning	N/A
PADLOC	UHGV-1948684_52	AAA_15	45.8	0.00000000000047	N/A	N/A
Pfam	UHGV-1948684_52	PF02463	N/A	N/A	RecF/RecN/SMC N terminal domain	SMC_N
COG	UHGV-1948684_52	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A