UHGV-1953887 (vOTU-021307)

Viral Genome: UHGV-1953887

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1953887
vOTU ID	vOTU-021307
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300008744\|Ga0114025_1000595
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.38 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9754
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.52
Jumbo phage	No

Genome content
Genome length (bp)	37,769
GC content	48.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	91%
Average CDS length (bps)	662.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1953887_2	phrog_38	199.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1953887_2	UniRef90_A0A810QA10	637.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1953887_2	1298920.KI911353_gene2682	475.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1953887_2	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1953887_2	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1953887_2	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-1953887_4	K14060	142.7	3.00018e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1953887_4	phrog_125	167.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_4	UniRef90_A0A3D0LYX8	221.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1953887_4	641107.CDLVIII_3188	209.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1953887_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1953887_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1953887_4	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1953887_5	UniRef90_A0A417DZ16	58.9	0.00000000109	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1953887_5	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_7	phrog_6244	56.4	7.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-1953887_7	1354300.AUQY01000005_gene215	108.0	1.42e-29	N/A	N/A
UniRef90	UHGV-1953887_9	UniRef90_A0A5P8D6D5	56.6	0.0000000471	Sequence-specific DNA binding RNA polymerase II transcription factor	N/A
PHROG	UHGV-1953887_10	phrog_4264	51.8	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1953887_10	442493.A8E2H1_BPPHE	49.7	0.000000637	N/A	N/A
eggNOG-mapper	UHGV-1953887_12	1415774.U728_1676	57.4	0.0000000547	DNA-packaging protein gp3	N/A
PHROG	UHGV-1953887_13	phrog_864	205.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_13	UniRef90_A0A1M7S6C1	204.0	0	Putative DNA primase/helicase	N/A
eggNOG-mapper	UHGV-1953887_13	1232453.BAIF02000019_gene3935	196.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-1953887_13	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-1953887_13	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1953887_13	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1953887_13	PF05272,PF02257,NF005477,COG3378	N/A	N/A	N/A	N/A
KOfam	UHGV-1953887_14	K07450	41.0	0.00000000002	K07450; putative resolvase	N/A
UniRef90	UHGV-1953887_14	UniRef90_UPI00195D79B5	62.4	0.0000000000849	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1953887_14	748671.LCRIS_00589	72.8	0.0000000000000293	Resolvase, N-terminal	N/A
Pfam	UHGV-1953887_14	PF13411	N/A	N/A	MerR HTH family regulatory protein	MerR_1
COG	UHGV-1953887_14	COG2452	N/A	N/A	Predicted site-specific integrase-resolvase	N/A
KOfam	UHGV-1953887_18	K03465	195.7	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-1953887_18	phrog_85	130.2	7.8e-39	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_18	UniRef90_R6MZ76	306.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-1953887_18	665956.HMPREF1032_03153	186.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-1953887_18	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-1953887_18	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-1953887_18	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
HAMAP	UHGV-1953887_18	MF_01408	N/A	N/A	Flavin-dependent thymidylate synthase [thyX]	N/A
structural_annotation	UHGV-1953887_18	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_19	phrog_374	214.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_19	UniRef90_R6GUW7	171.0	0	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1953887_19	742767.HMPREF9456_02044	188.0	0	N/A	N/A
structural_annotation	UHGV-1953887_19	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_20	phrog_1829	155.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_20	UniRef90_R6P545	501.0	0	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase N-terminal	N/A
eggNOG-mapper	UHGV-1953887_20	1121866.AUGK01000003_gene1409	206.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-1953887_20	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-1953887_20	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-1953887_20	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1953887_21	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1953887_24	K03698	44.2	0.0000000000028	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-1953887_24	phrog_28876	112.4	3.6e-33	metal-dependent phosphohydrolase	other
UniRef90	UHGV-1953887_24	UniRef90_A0A1C6EYG8	276.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-1953887_24	1219626.HMPREF1639_07345	166.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-1953887_24	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-1953887_24	PF01966,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_25	phrog_801	85.5	9e-25	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-1953887_25	UniRef90_R6MZ55	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-1953887_25	1297570.MESS4_510075	52.4	0.000000958	N/A	N/A
Pfam	UHGV-1953887_25	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1953887_25	PF18909	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1953887_26	PF05037	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1953887_27	cluster_73853	39.3	0.0000000168	NA	N/A
PHROG	UHGV-1953887_30	phrog_434	113.2	2.7e-33	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_30	UniRef90_R6N9M4	649.0	0	Phage-related protein predicted endonuclease	N/A
eggNOG-mapper	UHGV-1953887_30	1219626.HMPREF1639_07320	346.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1953887_30	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-1953887_30	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1953887_30	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1953887_31	K02319	41.1	0.000000000000065	pol; DNA polymerase, archaea type [EC:2.7.7.7]	N/A
PHROG	UHGV-1953887_31	phrog_1252	494.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_31	UniRef90_A0A849CVC4	1412.0	0	DNA polymerase elongation subunit (Family B)	N/A
eggNOG-mapper	UHGV-1953887_31	1121866.AUGK01000003_gene1403	653.0	0	DNA replication proofreading	N/A
Pfam	UHGV-1953887_31	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1953887_31	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-1953887_31	PF04404,PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
KOfam	UHGV-1953887_32	K18959	196.0	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-1953887_32	phrog_16	191.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_32	UniRef90_A0A849CVE0	782.0	0	DEAD/DEAH box helicase family protein	N/A
eggNOG-mapper	UHGV-1953887_32	1449050.JNLE01000003_gene3908	496.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-1953887_32	mREase_IV_00005	43.0	0.0000000000039	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1953887_32	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1953887_32	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1953887_32	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1953887_32	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_33	phrog_843	40.5	0.000000000025	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_33	UniRef90_D7GXC2	172.0	0	Archaeal holliday junction resolvase (Hjc)	N/A
eggNOG-mapper	UHGV-1953887_33	1232453.BAIF02000010_gene3342	115.0	3.18e-31	Recombination protein U	N/A
structural_annotation	UHGV-1953887_33	PF03838,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1953887_34	K08309	58.0	2.1e-16	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-1953887_34	phrog_19349	167.8	0	N/A	unknown function
UniRef90	UHGV-1953887_34	UniRef90_R6N9M0	348.0	0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	N/A
eggNOG-mapper	UHGV-1953887_34	742740.HMPREF9474_02375	129.0	2.31e-34	lytic transglycosylase activity	N/A
Pfam	UHGV-1953887_34	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-1953887_34	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1953887_34	PF01464,MF_01616,NF011856,COG0741	N/A	N/A	N/A	N/A
UniRef90	UHGV-1953887_36	UniRef90_A0A1C6L0N4	140.0	7.99006e-41	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-1953887_36	PF08667,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1953887_37	K06400	348.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1953887_37	phrog_95	353.1	0	integrase	integration and excision
UniRef90	UHGV-1953887_37	UniRef90_R6N1X8	785.0	0	DNA integration/recombination protein	N/A
eggNOG-mapper	UHGV-1953887_37	445972.ANACOL_03320	400.0	0	N/A	N/A
Pfam	UHGV-1953887_37	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1953887_37	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1953887_37	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1953887_37	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1953887_37	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1953887_40	UniRef90_H1CEM5	501.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-1953887_40	1235797.C816_02842	230.0	0	mannosyl-glycoprotein	N/A
Pfam	UHGV-1953887_40	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1953887_40	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1953887_40	PF05382,NF033743	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_41	phrog_13256	61.9	6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1953887_41	1226322.HMPREF1545_00166	70.5	0.00000000000000384	N/A	N/A
PHROG	UHGV-1953887_42	phrog_1863	70.1	1.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-1953887_42	748224.HMPREF9436_00408	101.0	1.91e-27	N/A	N/A
eggNOG-mapper	UHGV-1953887_43	1235797.C816_04174	182.0	0	N/A	N/A
structural_annotation	UHGV-1953887_43	PF14600	N/A	N/A	N/A	N/A
KOfam	UHGV-1953887_45	K00986	65.4	8.9e-19	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1953887_45	phrog_1423	171.6	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1953887_45	UniRef90_H1CEN0	676.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1953887_45	521003.COLINT_02359	235.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1953887_45	icity0040	53.8	0.0000000000000045	RT (reverse transcriptase)	CRISPR-CAS
COG	UHGV-1953887_45	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1953887_45	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_46	phrog_30516	44.7	0.00000000000029	N/A	unknown function
structural_annotation	UHGV-1953887_46	PF05635,NF008911	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_47	phrog_37900	92.7	1.7e-28	N/A	unknown function
UniRef90	UHGV-1953887_47	UniRef90_H1CEN2	545.0	0	N/A	N/A
eggNOG-mapper	UHGV-1953887_47	1519439.JPJG01000060_gene1894	189.0	0	N/A	N/A
Pfam	UHGV-1953887_47	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1953887_47	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1953887_47	PF19789,PF14686,TIGR04183,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_48	phrog_18725	76.7	2.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1953887_48	1226322.HMPREF1545_00062	105.0	1.11e-26	N/A	N/A
PHROG	UHGV-1953887_49	phrog_13879	295.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1953887_49	665956.HMPREF1032_03630	252.0	0	N/A	N/A
structural_annotation	UHGV-1953887_49	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_50	phrog_1194	92.0	5.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-1953887_50	742740.HMPREF9474_03515	130.0	2.77e-37	N/A	N/A
structural_annotation	UHGV-1953887_50	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1953887_51	phrog_1535	207.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1953887_51	1121866.AUGK01000003_gene1437	318.0	0	phage tail tape measure protein	N/A
COG	UHGV-1953887_51	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-1953887_52	1121333.JMLH01000047_gene1011	78.6	9.81e-17	N/A	N/A