UHGV-1961411 (vOTU-020734)

Viral Genome: UHGV-1961411

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1961411
vOTU ID	vOTU-020734
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300008496\|Ga0115078_100003\|provirus_3_35493
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.97 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9727
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.59
Jumbo phage	No

Genome content
Genome length (bp)	35,491
GC content	40.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	91%
Average CDS length (bps)	632.82
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1961411_1	phrog_1794	79.2	6.7e-23	amidase	lysis
UniRef90	UHGV-1961411_1	UniRef90_A0A374NDR7	174.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-1961411_1	1519439.JPJG01000059_gene1952	84.0	1.18e-17	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1961411_1	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1961411_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
KOfam	UHGV-1961411_2	K14059	156.0	0	int; integrase	N/A
PHROG	UHGV-1961411_2	phrog_1	169.2	0	integrase	integration and excision
UniRef90	UHGV-1961411_2	UniRef90_A0A412L7T7	694.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1961411_2	1540257.JQMW01000011_gene2033	322.0	0	Phage integrase family	N/A
Pfam	UHGV-1961411_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1961411_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1961411_2	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1961411_3	K22299	57.4	3.6e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1961411_3	phrog_8	62.0	1.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1961411_3	UniRef90_A0A374NFM5	128.0	9e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1961411_3	1567011.A0A0A7RUJ5_9VIRU	68.9	0.0000000000000138	protein disulfide oxidoreductase activity	N/A
PADLOC	UHGV-1961411_3	retron_type_VI_hth_cluster2_1	45.7	0.0000000000018	N/A	Retron
Pfam	UHGV-1961411_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1961411_3	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1961411_4	PF15968	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1961411_5	PF20505,MF_00194,NF001462,COG2974	N/A	N/A	N/A	N/A
KOfam	UHGV-1961411_6	K01356	111.6	1.1e-32	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1961411_6	phrog_4	125.8	3.9e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-1961411_6	UniRef90_UPI0015F84BF4	308.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1961411_6	246199.CUS_5911	133.0	6.18e-36	N/A	N/A
Pfam	UHGV-1961411_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1961411_6	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1961411_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1961411_6	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_7	phrog_3	40.4	0.00000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-1961411_7	UniRef90_UPI001C11D88B	73.2	0.0000000000000011	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1961411_7	999411.HMPREF1092_00882	54.7	0.00000000474	Helix-turn-helix	N/A
Pfam	UHGV-1961411_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1961411_7	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_10	phrog_3882	42.5	0.0000000000074	N/A	unknown function
structural_annotation	UHGV-1961411_13	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1961411_16	PF04570,COG2075	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_17	phrog_674	154.8	0	N/A	unknown function
UniRef90	UHGV-1961411_17	UniRef90_A0A374N9T8	561.0	0	N/A	N/A
eggNOG-mapper	UHGV-1961411_17	1408437.JNJN01000039_gene373	186.0	0	N/A	N/A
Pfam	UHGV-1961411_17	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1961411_17	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1961411_18	K07455	204.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1961411_18	phrog_148	218.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1961411_18	UniRef90_A0A374N9W0	567.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1961411_18	428127.EUBDOL_01509	279.0	0	RecT family	N/A
Pfam	UHGV-1961411_18	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1961411_18	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1961411_18	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1961411_18	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1961411_19	K06167	49.6	0.000000000000054	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1961411_19	phrog_392	120.6	1.5e-35	metal-dependent hydrolase	other
UniRef90	UHGV-1961411_19	UniRef90_A0A373XYI8	464.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1961411_19	665956.HMPREF1032_03101	160.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1961411_19	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1961411_19	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1961411_19	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_20	phrog_398	200.4	0	N/A	unknown function
UniRef90	UHGV-1961411_20	UniRef90_UPI001E5E0390	184.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1961411_20	293826.Amet_2584	176.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1961411_20	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1961411_20	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_21	phrog_2562	132.9	3e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1961411_21	UniRef90_A0A374NA85	572.0	0	N/A	N/A
eggNOG-mapper	UHGV-1961411_21	1235790.C805_00030	154.0	3.15012e-42	N/A	N/A
Pfam	UHGV-1961411_21	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1961411_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1961411_21	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-1961411_22	K02315	141.6	6.19934e-42	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1961411_22	phrog_50	138.4	4.99997e-41	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1961411_22	UniRef90_A0A374MYR7	559.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1961411_22	1507.HMPREF0262_00302	199.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-1961411_22	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1961411_22	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1961411_22	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_23	phrog_824	137.2	5.40004e-41	N/A	unknown function
UniRef90	UHGV-1961411_23	UniRef90_A0A374MXE9	251.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1961411_23	1235792.C808_00622	130.0	4.6e-36	VRR_NUC	N/A
Pfam	UHGV-1961411_23	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1961411_23	PF08774	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1961411_25	PF05129	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_28	phrog_36	81.9	8.6e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-1961411_28	UniRef90_A0A2N0UXQ6	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-1961411_28	1401067.HMPREF0872_06835	95.1	3.66e-23	N/A	N/A
Pfam	UHGV-1961411_28	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1961411_28	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1961411_29	K06909	396.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1961411_29	phrog_3717	146.2	5.60519e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1961411_29	UniRef90_A0A2N0ULW5	1033.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1961411_29	411461.DORFOR_01162	617.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1961411_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1961411_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1961411_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1961411_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1961411_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_30	phrog_533	327.2	0	portal protein	head and packaging
UniRef90	UHGV-1961411_30	UniRef90_A0A2N0ULU9	834.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1961411_30	1304866.K413DRAFT_3035	471.0	0	N/A	N/A
structural_annotation	UHGV-1961411_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_31	phrog_581	318.4	0	minor head protein	head and packaging
UniRef90	UHGV-1961411_31	UniRef90_A0A2N0ULU5	741.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-1961411_31	411470.RUMGNA_02213	369.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1961411_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1961411_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1961411_31	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_32	phrog_2616	43.6	0.0000000000058	N/A	unknown function
structural_annotation	UHGV-1961411_32	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_33	phrog_194	100.2	2.5e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1961411_33	UniRef90_A0A2N0ULW9	338.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1961411_33	742765.HMPREF9457_02126	176.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1961411_33	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1961411_33	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_34	phrog_422	224.1	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1961411_34	693746.OBV_18090	392.0	0	N/A	N/A
structural_annotation	UHGV-1961411_34	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_35	phrog_541	80.5	1.8e-23	head-tail adaptor	connector
UniRef90	UHGV-1961411_35	UniRef90_A0A371AQT0	110.0	9.64e-29	N/A	N/A
eggNOG-mapper	UHGV-1961411_35	1449050.JNLE01000003_gene3888	82.8	8.49e-19	N/A	N/A
PHROG	UHGV-1961411_36	phrog_3366	67.4	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-1961411_36	1449050.JNLE01000003_gene3887	81.6	4.56e-18	N/A	N/A
Pfam	UHGV-1961411_36	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1961411_36	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_37	phrog_556	120.7	3.8e-36	minor head protein	head and packaging
UniRef90	UHGV-1961411_37	UniRef90_UPI00189BC4F9	179.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1961411_37	1449050.JNLE01000003_gene3886	174.0	0	N/A	N/A
Pfam	UHGV-1961411_37	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1961411_37	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_38	phrog_3266	106.0	2.4e-31	tail completion	connector
eggNOG-mapper	UHGV-1961411_38	1449050.JNLE01000003_gene3885	140.0	6.15997e-41	N/A	N/A
structural_annotation	UHGV-1961411_38	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_39	phrog_3099	148.5	2.66247e-44	N/A	unknown function
eggNOG-mapper	UHGV-1961411_39	1160721.RBI_II00532	230.0	0	N/A	N/A
structural_annotation	UHGV-1961411_39	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_40	phrog_11299	136.6	1.10001e-40	N/A	unknown function
eggNOG-mapper	UHGV-1961411_40	1449050.JNLE01000003_gene3883	97.8	4.31e-24	N/A	N/A
structural_annotation	UHGV-1961411_40	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_41	phrog_706	139.5	1.90002e-41	N/A	unknown function
UniRef90	UHGV-1961411_41	UniRef90_A0A2N0ULW2	369.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1961411_41	1160721.RBI_II00530	211.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1961411_41	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1961411_41	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_43	phrog_1535	487.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1961411_43	UniRef90_A0A2N0ULX3	2062.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1961411_43	33035.JPJF01000093_gene2243	347.0	0	phage tail tape measure protein	N/A
COG	UHGV-1961411_43	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1961411_43	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_44	phrog_1194	64.3	1.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-1961411_44	397290.C810_05238	94.0	1.02e-22	N/A	N/A
Pfam	UHGV-1961411_44	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1961411_44	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1961411_45	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-1961411_46	UniRef90_A0A374N9Y2	159.0	9.52883e-44	N/A	N/A
structural_annotation	UHGV-1961411_46	PF01664	N/A	N/A	N/A	N/A
PHROG	UHGV-1961411_48	phrog_199	76.0	4.1e-22	holin	lysis
UniRef90	UHGV-1961411_48	UniRef90_A0A2N0ULW7	271.0	0	Holin	N/A
eggNOG-mapper	UHGV-1961411_48	1160721.RBI_I01565	143.0	8.72028e-42	Bacteriophage holin family	N/A
Pfam	UHGV-1961411_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1961411_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1961411_48	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1961411_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1961411_49	K01448	57.3	2.4e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1961411_49	phrog_435	76.7	3.7e-22	endolysin	lysis
UniRef90	UHGV-1961411_49	UniRef90_A0A413QH71	407.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1961411_49	1384066.JAGT01000001_gene130	82.0	0.00000000000000254	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1961411_49	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1961411_49	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
KOfam	UHGV-1961411_50	K06223	227.8	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1961411_50	phrog_56	190.4	0	DNA methyltransferase	other
UniRef90	UHGV-1961411_50	UniRef90_A0A1C6HHY1	510.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-1961411_50	742733.HMPREF9469_02855	275.0	0	COG COG0338 Site-specific DNA methylase	N/A
PADLOC	UHGV-1961411_50	MTase_II_00080	130.5	1.5e-38	Type II methyltransferase	RM
Pfam	UHGV-1961411_50	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-1961411_50	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-1961411_50	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1961411_50	PF02086,MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-1961411_51	K07727	78.3	1.6e-22	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-1961411_51	phrog_3	42.9	0.000000000018	transcriptional repressor	transcription regulation
UniRef90	UHGV-1961411_51	UniRef90_A0A413QHG2	183.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1961411_51	411471.SUBVAR_07446	123.0	1.35e-35	helix-turn-helix	N/A
Pfam	UHGV-1961411_51	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1961411_51	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1961411_51	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A