UHGV-1962170 (vOTU-086258)

Viral Genome: UHGV-1962170

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1962170
vOTU ID	vOTU-086258
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300008326\|Ga0115311_100407
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.63 (High-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.28
Jumbo phage	No

Genome content
Genome length (bp)	34,938
GC content	57.38%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	91%
Average CDS length (bps)	624.94
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1962170_1	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
Pfam	UHGV-1962170_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1962170_3	PF13744,NF007481,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_7	phrog_14970	254.5	0	N/A	unknown function
UniRef90	UHGV-1962170_7	UniRef90_A0A3P6JH63	213.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1962170_7	411470.RUMGNA_02193	217.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1962170_7	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1962170_7	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1962170_7	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1962170_8	K03111	78.2	1.8e-22	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1962170_8	phrog_44	70.6	3.3e-20	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1962170_8	UniRef90_A0A4Z0CEI8	60.8	0.0000000176	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1962170_8	1074488.AGBX01000001_gene892	56.2	0.000000139	Single-strand binding protein family	N/A
Pfam	UHGV-1962170_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1962170_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1962170_8	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_9	phrog_8489	205.6	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1962170_9	UniRef90_A0A022N9G2	210.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-1962170_9	1139219.I569_00860	192.0	0	DnaD domain protein	N/A
COG	UHGV-1962170_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1962170_9	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_10	phrog_1770	53.1	0.0000000000000058	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1962170_10	536233.CLO_1822	120.0	2.5e-32	N/A	N/A
structural_annotation	UHGV-1962170_10	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
UniRef90	UHGV-1962170_12	UniRef90_UPI001A9B9FB4	261.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-1962170_12	1410632.JHWW01000006_gene695	200.0	0	N/A	N/A
Pfam	UHGV-1962170_12	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-1962170_12	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_14	phrog_111	161.2	0	DNA methyltransferase	other
UniRef90	UHGV-1962170_14	UniRef90_A0A316S635	216.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-1962170_14	1567011.A0A0A7RUD1_9VIRU	184.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-1962170_14	oMTase_00015	184.9	0	orphan methyltransferase	RM
Pfam	UHGV-1962170_14	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1962170_14	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_15	phrog_38832	59.4	5.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1962170_15	665956.HMPREF1032_00143	55.5	0.0000000333	N/A	N/A
KOfam	UHGV-1962170_18	K03091	50.3	0.000000000000045	sigH; RNA polymerase sporulation-specific sigma factor	N/A
Pfam	UHGV-1962170_18	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-1962170_18	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1962170_18	COG0568	N/A	N/A	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	N/A
structural_annotation	UHGV-1962170_18	PF04542,MF_00961,TIGR02835,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_20	phrog_474	97.9	1.7e-28	phosphofructokinase	other
UniRef90	UHGV-1962170_20	UniRef90_K1TIM3	132.0	5.01e-37	N/A	N/A
eggNOG-mapper	UHGV-1962170_20	1203606.HMPREF1526_00237	99.0	1.02e-24	N/A	N/A
Pfam	UHGV-1962170_20	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1962170_20	PF19905	N/A	N/A	N/A	N/A
UniRef90	UHGV-1962170_21	UniRef90_A0A810QFN4	170.0	1.01e-38	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1962170_21	1519439.JPJG01000011_gene53	373.0	0	N/A	N/A
eggNOG-mapper	UHGV-1962170_23	693746.OBV_01600	89.4	4.1e-17	N/A	N/A
PHROG	UHGV-1962170_25	phrog_10091	117.0	1e-34	holin	lysis
UniRef90	UHGV-1962170_25	UniRef90_R5MCL9	144.0	3.5593e-43	Holin phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1962170_25	445975.COLSTE_02144	134.0	3.77e-40	Bacteriophage holin	N/A
Pfam	UHGV-1962170_25	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1962170_25	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1962170_25	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1962170_25	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-1962170_26	K01447	118.4	7.8e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1962170_26	phrog_9611	138.3	5.40004e-41	endolysin	lysis
UniRef90	UHGV-1962170_26	UniRef90_R5B1Z3	400.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1962170_26	97138.C820_00251	220.0	0	Ami_2	N/A
Pfam	UHGV-1962170_26	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1962170_26	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1962170_26	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1962170_27	UniRef90_UPI001BF10870	240.0	0	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-1962170_27	610130.Closa_0587	84.0	0.0000000000000026	Tyrosine phosphatase family	N/A
Pfam	UHGV-1962170_27	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-1962170_27	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
structural_annotation	UHGV-1962170_27	PF13350,PF18998,PF17425,COG2365	N/A	N/A	N/A	N/A
KOfam	UHGV-1962170_29	K18454	44.6	0.0000000000016	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-1962170_29	phrog_27545	70.2	2.6e-20	N/A	unknown function
UniRef90	UHGV-1962170_29	UniRef90_A0A1C5VT90	153.0	1.4013e-45	Chitinase A1	N/A
eggNOG-mapper	UHGV-1962170_29	552398.HMPREF0866_03095	124.0	5.25e-34	N/A	N/A
Pfam	UHGV-1962170_29	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1962170_29	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_33	phrog_19976	45.2	0.000000000001	tail assembly protein	tail
COG	UHGV-1962170_33	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-1962170_34	phrog_24267	99.9	2.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1962170_34	508419.F8J176_9CAUD	132.0	8.4e-33	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-1962170_34	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_35	phrog_38190	57.4	2.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-1962170_35	411473.RUMCAL_00420	69.7	0.000000000342	nuclear chromosome segregation	N/A
COG	UHGV-1962170_35	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1962170_37	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1962170_38	PF17577	N/A	N/A	N/A	N/A
UniRef90	UHGV-1962170_39	UniRef90_A0A4D7ASB8	431.0	0	N/A	N/A
eggNOG-mapper	UHGV-1962170_39	693746.OBV_01680	475.0	0	N/A	N/A
structural_annotation	UHGV-1962170_39	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1962170_40	1519439.JPJG01000011_gene57	90.1	5.11e-21	N/A	N/A
structural_annotation	UHGV-1962170_40	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_41	phrog_422	122.7	3e-36	major head protein	head and packaging
UniRef90	UHGV-1962170_41	UniRef90_K1S1E0	361.0	0	Gp7 (Fragment)	N/A
eggNOG-mapper	UHGV-1962170_41	693746.OBV_01700	219.0	0	N/A	N/A
Pfam	UHGV-1962170_41	PF13287	N/A	N/A	Fn3 associated	Fn3_assoc
structural_annotation	UHGV-1962170_41	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_43	phrog_156	140.5	3.09967e-42	portal protein	head and packaging
eggNOG-mapper	UHGV-1962170_43	693746.OBV_01670	560.0	0	N/A	N/A
structural_annotation	UHGV-1962170_43	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1962170_45	K06909	133.2	2.5e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1962170_45	phrog_979	135.6	1.29998e-41	terminase large subunit	head and packaging
UniRef90	UHGV-1962170_45	UniRef90_A0A1M5YHQ5	643.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1962170_45	693746.OBV_01690	521.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1962170_45	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1962170_45	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1962170_45	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_47	phrog_7339	131.5	5.4e-39	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1962170_47	UniRef90_A0A8F2F0X6	263.0	0	Metallophosphoesterase	N/A
eggNOG-mapper	UHGV-1962170_47	443254.Marpi_0340	103.0	1.66e-23	metallophosphoesterase	N/A
Pfam	UHGV-1962170_47	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-1962170_47	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-1962170_47	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1962170_48	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1962170_50	phrog_15863	170.7	0	N/A	unknown function
UniRef90	UHGV-1962170_50	UniRef90_K1RTM4	229.0	0	DnaJ domain protein	N/A
eggNOG-mapper	UHGV-1962170_50	693746.OBV_01780	180.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-1962170_50	PF00226	N/A	N/A	DnaJ domain	DnaJ
COG	UHGV-1962170_50	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-1962170_51	K01489	183.0	0	cdd, CDA; cytidine deaminase [EC:3.5.4.5]	N/A
UniRef90	UHGV-1962170_51	UniRef90_A0A1Q6Q7R9	274.0	0	Cytidine deaminase	N/A
eggNOG-mapper	UHGV-1962170_51	1519439.JPJG01000056_gene2224	279.0	0	This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis	N/A
Pfam	UHGV-1962170_51	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
NCBIFam	UHGV-1962170_51	NF004064.0	N/A	N/A	cytidine deaminase	N/A
COG	UHGV-1962170_51	COG0295	N/A	N/A	Cytidine deaminase	N/A