UHGV-1967137 (vOTU-135229)

Viral Genome: UHGV-1967137

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1967137
vOTU ID	vOTU-135229
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300014922\|Ga0169850_100220\|provirus_3_34064
Associated BioSample	SAMEA2580262
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.91 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9736
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.71
Jumbo phage	No

Genome content
Genome length (bp)	34,062
GC content	39.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	87%
Average CDS length (bps)	580.88
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1967137_2	UniRef90_UPI00189796FC	120.0	3.83e-34	zinc-ribbon domain-containing protein	N/A
COG	UHGV-1967137_2	COG1933	N/A	N/A	Archaeal DNA polymerase II, large subunit	N/A
structural_annotation	UHGV-1967137_2	PF13248	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1967137_3	1232453.BAIF02000134_gene1601	269.0	0	N/A	N/A
KOfam	UHGV-1967137_5	K00558	142.9	1.4013e-43	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1967137_5	phrog_363	215.9	0	DNA methyltransferase	other
UniRef90	UHGV-1967137_5	UniRef90_UPI00129DFAF3	540.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1967137_5	903814.ELI_3130	375.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1967137_5	MTase_II_00058	112.0	9.3e-33	Type II methyltransferase	RM
Pfam	UHGV-1967137_5	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1967137_5	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1967137_5	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1967137_5	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1967137_6	1163671.JAGI01000002_gene1275	87.4	1.68e-21	N/A	N/A
KOfam	UHGV-1967137_7	K10979	294.4	0	ku; DNA end-binding protein Ku	N/A
PHROG	UHGV-1967137_7	phrog_4873	167.3	0	Ku-like DNA end binding	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1967137_7	UniRef90_A0A3E2WEU7	500.0	0	Non-homologous end joining protein Ku	N/A
eggNOG-mapper	UHGV-1967137_7	1304866.K413DRAFT_4776	363.0	0	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD	N/A
Pfam	UHGV-1967137_7	PF02735	N/A	N/A	Ku70/Ku80 beta-barrel domain	Ku
NCBIFam	UHGV-1967137_7	TIGR02772.1	N/A	N/A	Ku protein	N/A
COG	UHGV-1967137_7	COG1273	N/A	N/A	Non-homologous end joining protein Ku, dsDNA break repair	N/A
HAMAP	UHGV-1967137_7	MF_01875	N/A	N/A	Non-homologous end joining protein Ku [ku]	N/A
structural_annotation	UHGV-1967137_7	PF02735,MF_01875,TIGR02772,COG1273	N/A	N/A	N/A	N/A
KOfam	UHGV-1967137_8	K01971	195.0	0	ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]	N/A
PHROG	UHGV-1967137_8	phrog_114	104.1	1.1e-30	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1967137_8	UniRef90_A0A3E2WG54	630.0	0	DNA ligase (ATP)	N/A
eggNOG-mapper	UHGV-1967137_8	610130.Closa_3638	410.0	0	ATP dependent DNA ligase domain	N/A
Pfam	UHGV-1967137_8	PF01068	N/A	N/A	ATP dependent DNA ligase domain	DNA_ligase_A_M
Pfam	UHGV-1967137_8	PF04679	N/A	N/A	ATP dependent DNA ligase C terminal region	DNA_ligase_A_C
COG	UHGV-1967137_8	COG1793	N/A	N/A	ATP-dependent DNA ligase	N/A
structural_annotation	UHGV-1967137_8	PF01068,PF04679,MF_00407,TIGR02779,COG1793	N/A	N/A	N/A	N/A
KOfam	UHGV-1967137_9	K04763	183.7	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1967137_9	phrog_1	161.6	0	integrase	integration and excision
UniRef90	UHGV-1967137_9	UniRef90_A0A174LK14	642.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1967137_9	1232453.BAIF02000028_gene2714	616.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1967137_9	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1967137_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1967137_9	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1967137_9	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1967137_10	K06400	286.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1967137_10	phrog_95	296.1	0	integrase	integration and excision
UniRef90	UHGV-1967137_10	UniRef90_A0A174JKJ4	573.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-1967137_10	1157490.EL26_02935	203.0	0	Recombinase	N/A
Pfam	UHGV-1967137_10	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1967137_10	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1967137_10	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1967137_10	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1967137_12	K07727	44.0	0.0000000000056	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1967137_12	UniRef90_A0A3E2WG07	158.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1967137_12	1235790.C805_00736	116.0	3.12e-33	Transcriptional regulator	N/A
Pfam	UHGV-1967137_12	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1967137_12	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1967137_12	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1967137_13	1232453.BAIF02000058_gene1618	155.0	0	N/A	N/A
eggNOG-mapper	UHGV-1967137_15	1232453.BAIF02000058_gene1620	87.4	2.07e-18	N/A	N/A
structural_annotation	UHGV-1967137_15	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_22	phrog_38	153.7	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1967137_22	UniRef90_A0A8D9PG33	459.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1967137_22	1232453.BAIF02000058_gene1623	817.0	0	TIGRFAM Phage	N/A
COG	UHGV-1967137_22	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1967137_22	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_23	phrog_36	42.2	0.000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-1967137_23	UniRef90_A0A893WAZ5	142.0	1.05001e-40	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1967137_23	1232453.BAIF02000058_gene1624	288.0	0	N/A	N/A
structural_annotation	UHGV-1967137_23	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_24	phrog_64	167.1	0	portal protein	head and packaging
UniRef90	UHGV-1967137_24	UniRef90_A0A174JP91	982.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-1967137_24	1232453.BAIF02000058_gene1625	1002.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1967137_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1967137_24	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1967137_25	COG4416	N/A	N/A	N/A	N/A
UniRef90	UHGV-1967137_26	UniRef90_UPI00189AAC90	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-1967137_26	1232453.BAIF02000058_gene1626	345.0	0	N/A	N/A
structural_annotation	UHGV-1967137_26	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_27	phrog_909	42.2	0.000000000015	major head protein	head and packaging
eggNOG-mapper	UHGV-1967137_27	1232453.BAIF02000058_gene1627	217.0	0	N/A	N/A
PHROG	UHGV-1967137_28	phrog_29	163.2	0	major head protein	head and packaging
UniRef90	UHGV-1967137_28	UniRef90_A0A3E2WEV2	881.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1967137_28	1232453.BAIF02000058_gene1628	879.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1967137_28	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
Pfam	UHGV-1967137_28	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1967137_28	PF03864,PF18316,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1967137_29	397290.C810_01402	103.0	3.85e-27	N/A	N/A
Pfam	UHGV-1967137_29	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
eggNOG-mapper	UHGV-1967137_30	1232453.BAIF02000058_gene1630	239.0	0	N/A	N/A
structural_annotation	UHGV-1967137_30	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1967137_31	UniRef90_UPI001BBD4500	220.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1967137_31	1232453.BAIF02000058_gene1631	120.0	2.55e-32	N/A	N/A
AcrCatalog	UHGV-1967137_31	cluster_24841	129.0	3.70999e-40	NA	N/A
structural_annotation	UHGV-1967137_31	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1967137_32	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_33	phrog_158	49.5	0.000000000000082	major tail protein	tail
UniRef90	UHGV-1967137_33	UniRef90_UPI000E415907	209.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1967137_33	1232453.BAIF02000058_gene1634	271.0	0	N/A	N/A
Pfam	UHGV-1967137_33	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1967137_33	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_36	phrog_28918	367.8	0	N/A	unknown function
UniRef90	UHGV-1967137_36	UniRef90_A0A1C6H654	471.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1967137_36	1232453.BAIF02000058_gene1637	2137.0	0	phage tail tape measure protein	N/A
COG	UHGV-1967137_36	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1967137_36	NF012014	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1967137_38	658655.HMPREF0988_02544	99.4	4.71e-27	N/A	N/A
structural_annotation	UHGV-1967137_38	PF01402,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_39	phrog_373	101.4	1.1e-29	anti-repressor	transcription regulation
UniRef90	UHGV-1967137_39	UniRef90_A0A3E3IZV0	123.0	1.01e-33	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1967137_39	1235792.C808_03051	123.0	2.48e-34	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1967137_39	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1967137_39	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1967137_39	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
PHROG	UHGV-1967137_40	phrog_8448	58.9	1.1e-16	anti-repressor	transcription regulation
UniRef90	UHGV-1967137_40	UniRef90_UPI0012DFCA1F	80.1	3.67e-17	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1967137_40	476272.RUMHYD_03311	82.4	6.69e-18	ORF6C domain	N/A
Pfam	UHGV-1967137_40	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1967137_40	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
PHROG	UHGV-1967137_42	phrog_1194	95.1	5.3e-28	N/A	unknown function
UniRef90	UHGV-1967137_42	UniRef90_A0A4U9RD70	70.9	0.000000000000146	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-1967137_42	1232453.BAIF02000058_gene1638	230.0	0	N/A	N/A
Pfam	UHGV-1967137_42	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1967137_42	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_43	phrog_2566	89.1	3.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1967137_43	1232453.BAIF02000058_gene1639	139.0	3.16974e-42	N/A	N/A
PHROG	UHGV-1967137_44	phrog_1401	73.6	2.5e-21	N/A	unknown function
UniRef90	UHGV-1967137_44	UniRef90_A0A7C6P910	90.9	4.78e-21	N/A	N/A
eggNOG-mapper	UHGV-1967137_44	1232453.BAIF02000058_gene1640	206.0	0	N/A	N/A
structural_annotation	UHGV-1967137_44	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_45	phrog_6616	133.9	1.1e-39	tail protein	tail
UniRef90	UHGV-1967137_45	UniRef90_UPI001C10B551	503.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1967137_45	1232453.BAIF02000058_gene1641	1105.0	0	Phage minor structural protein	N/A
COG	UHGV-1967137_45	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1967137_45	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1967137_47	phrog_1775	42.3	0.0000000000036	minor head protein	head and packaging
eggNOG-mapper	UHGV-1967137_47	1232453.BAIF02000059_gene1614	185.0	0	N/A	N/A
PHROG	UHGV-1967137_48	phrog_199	77.3	1.6e-22	holin	lysis
UniRef90	UHGV-1967137_48	UniRef90_A0A174N356	288.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-1967137_48	1235792.C808_00101	219.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1967137_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1967137_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1967137_48	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1967137_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1967137_49	K07273	175.7	0	acm; lysozyme	N/A
PHROG	UHGV-1967137_49	phrog_291	143.7	1.60028e-42	endolysin	lysis
UniRef90	UHGV-1967137_49	UniRef90_A0A174NAV1	607.0	0	N-acetylmuramoyl-L-alanine amidase sle1	N/A
eggNOG-mapper	UHGV-1967137_49	556261.HMPREF0240_01272	446.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1967137_49	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1967137_49	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1967137_49	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1967137_49	PF01183,MF_00152,NF008522,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-1967137_51	UniRef90_A0A3E2WER1	156.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1967137_51	1235798.C817_04284	114.0	3.62e-32	Helix-turn-helix domain	N/A
Pfam	UHGV-1967137_51	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1967137_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1967137_51	PF13560,NF041677,COG1396	N/A	N/A	N/A	N/A