UHGV-1967327 (vOTU-161733)

Viral Genome: UHGV-1967327

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1967327
vOTU ID	vOTU-161733
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300014560\|Ga0134394_100173\|provirus_24028_64716
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.56 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	8
CheckV host markers	5
Recoded stop codon	No

Viral Content
geNomad score	0.9619
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.49
Jumbo phage	No

Genome content
Genome length (bp)	27,032
GC content	46.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	30
CDS density	92%
Average CDS length (bps)	828.30
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.56)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1967327_1	phrog_4433	85.4	3.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-1967327_1	742740.HMPREF9474_02957	376.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1967327_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1967327_1	PF12120,NF000318	N/A	N/A	N/A	N/A
UniRef90	UHGV-1967327_2	UniRef90_UPI001C0FBF59	232.0	0	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-1967327_2	742740.HMPREF9474_02956	514.0	0	PcfK-like protein	N/A
Pfam	UHGV-1967327_2	PF14058	N/A	N/A	PcfK-like protein	PcfK
eggNOG-mapper	UHGV-1967327_3	742740.HMPREF9474_02955	174.0	0	N/A	N/A
structural_annotation	UHGV-1967327_3	PF03332	N/A	N/A	N/A	N/A
UniRef90	UHGV-1967327_4	UniRef90_A6NYZ8	841.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1967327_4	742740.HMPREF9474_02954	1244.0	0	N/A	N/A
Pfam	UHGV-1967327_4	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-1967327_4	PF14191	N/A	N/A	YodL-like	YodL
COG	UHGV-1967327_4	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1967327_4	PF14191,PF12965,PF01807,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1967327_5	742740.HMPREF9474_02953	684.0	0	N/A	N/A
structural_annotation	UHGV-1967327_5	PF06420	N/A	N/A	N/A	N/A
KOfam	UHGV-1967327_6	K03581	415.9	0	recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]	N/A
PHROG	UHGV-1967327_6	phrog_4412	471.9	0	exonuclease V	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1967327_6	UniRef90_A0A1C5NCJ8	1457.0	0	ATP-dependent RecD-like DNA helicase	N/A
eggNOG-mapper	UHGV-1967327_6	742740.HMPREF9474_02952	1475.0	0	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity	N/A
PADLOC	UHGV-1967327_6	cluster10	288.1	0	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-1967327_6	PF14520	N/A	N/A	Helix-hairpin-helix domain	HHH_5
Pfam	UHGV-1967327_6	PF14490	N/A	N/A	Helix-hairpin-helix containing domain	HHH_4
Pfam	UHGV-1967327_6	PF13604	N/A	N/A	AAA domain	AAA_30
Pfam	UHGV-1967327_6	PF18335	N/A	N/A	ATP-dependent RecD-like DNA helicase SH3 domain	SH3_13
Pfam	UHGV-1967327_6	PF13538	N/A	N/A	UvrD-like helicase C-terminal domain	UvrD_C_2
NCBIFam	UHGV-1967327_6	TIGR01448.1	N/A	N/A	ATP-dependent RecD-like DNA helicase	N/A
COG	UHGV-1967327_6	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
HAMAP	UHGV-1967327_6	MF_01488	N/A	N/A	ATP-dependent RecD-like DNA helicase [recD2]	N/A
structural_annotation	UHGV-1967327_6	PF13604,PF14490,PF18335,PF01336,MF_01488,TIGR01448,COG0507	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_7	phrog_434	238.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1967327_7	UniRef90_E7GPV6	727.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1967327_7	742740.HMPREF9474_02951	727.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1967327_7	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1967327_7	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1967327_7	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1967327_7	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1967327_8	445972.ANACOL_00991	140.0	2.25609e-43	N/A	N/A
structural_annotation	UHGV-1967327_8	PF20063,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1967327_9	K14059	72.2	1.2e-20	int; integrase	N/A
PHROG	UHGV-1967327_9	phrog_1	74.7	1.7e-21	integrase	integration and excision
UniRef90	UHGV-1967327_9	UniRef90_E7GPV4	439.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1967327_9	445972.ANACOL_00992	439.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1967327_9	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
COG	UHGV-1967327_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1967327_9	PF02920,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1967327_10	K07497	116.3	4.1e-34	K07497; putative transposase	N/A
PHROG	UHGV-1967327_10	phrog_157	220.2	0	transposase	integration and excision
UniRef90	UHGV-1967327_10	UniRef90_A0A3R6XF77	593.0	0	IS3 family transposase	N/A
eggNOG-mapper	UHGV-1967327_10	1280698.AUJS01000133_gene2149	609.0	0	N/A	N/A
Pfam	UHGV-1967327_10	PF00665	N/A	N/A	Integrase core domain	rve
NCBIFam	UHGV-1967327_10	NF033516.0	N/A	N/A	IS3 family transposase	N/A
COG	UHGV-1967327_10	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-1967327_10	PF00665,PF13276,NF033516,COG2801	N/A	N/A	N/A	N/A
KOfam	UHGV-1967327_11	K07483	50.8	0.000000000000047	K07483; transposase	N/A
PHROG	UHGV-1967327_11	phrog_151	40.9	0.000000000023	transposase	integration and excision
UniRef90	UHGV-1967327_11	UniRef90_A0A373CKA7	212.0	0	Transposase	N/A
eggNOG-mapper	UHGV-1967327_11	1280698.AUJS01000133_gene2150	213.0	0	Transposase	N/A
Pfam	UHGV-1967327_11	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-1967327_11	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1967327_11	PF02796,MF_00674,NF006928,COG3415	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_12	phrog_10	183.7	0	major head protein	head and packaging
UniRef90	UHGV-1967327_12	UniRef90_A0A3R6X865	705.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1967327_12	411902.CLOBOL_00134	692.0	0	Phage capsid family	N/A
Pfam	UHGV-1967327_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1967327_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1967327_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1967327_12	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_13	phrog_541	96.9	1.6e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-1967327_13	1304866.K413DRAFT_3039	124.0	4.4e-35	N/A	N/A
PHROG	UHGV-1967327_14	phrog_3366	87.5	9.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-1967327_14	411902.CLOBOL_00132	195.0	0	N/A	N/A
Pfam	UHGV-1967327_14	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1967327_14	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_15	phrog_556	87.7	4.5e-26	minor head protein	head and packaging
UniRef90	UHGV-1967327_15	UniRef90_UPI0015948E32	215.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1967327_15	411902.CLOBOL_00131	218.0	0	Minor capsid protein	N/A
Pfam	UHGV-1967327_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1967327_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_16	phrog_3266	130.6	6.5e-39	tail completion	connector
eggNOG-mapper	UHGV-1967327_16	411902.CLOBOL_00130	209.0	0	N/A	N/A
structural_annotation	UHGV-1967327_16	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_17	phrog_3099	155.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1967327_17	411902.CLOBOL_00129	251.0	0	N/A	N/A
structural_annotation	UHGV-1967327_17	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_18	phrog_11299	174.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1967327_18	1298920.KI911353_gene2067	103.0	2.68e-26	N/A	N/A
structural_annotation	UHGV-1967327_18	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_19	phrog_706	131.2	7.4e-39	N/A	unknown function
UniRef90	UHGV-1967327_19	UniRef90_UPI0011DC8B0C	271.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1967327_19	411902.CLOBOL_00127	238.0	0	N/A	N/A
Pfam	UHGV-1967327_19	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1967327_19	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_20	phrog_1535	332.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1967327_20	33035.JPJF01000093_gene2243	244.0	0	phage tail tape measure protein	N/A
COG	UHGV-1967327_20	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1967327_20	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_21	phrog_1194	77.5	1.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1967327_21	1304866.K413DRAFT_3047	186.0	0	N/A	N/A
Pfam	UHGV-1967327_21	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1967327_21	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_22	phrog_18190	892.2	0	N/A	unknown function
UniRef90	UHGV-1967327_22	UniRef90_R5ILV2	1352.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1967327_22	1298920.KI911353_gene2679	340.0	0	N/A	N/A
Pfam	UHGV-1967327_22	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1967327_22	PF14594,NF033848,COG3501	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_24	phrog_2012	48.5	0.00000000000016	minor tail protein	tail
PHROG	UHGV-1967327_25	phrog_12931	116.5	1.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-1967327_25	610130.Closa_1412	78.2	2.12e-16	N/A	N/A
PHROG	UHGV-1967327_26	phrog_1382	41.1	0.000000000019	N/A	unknown function
UniRef90	UHGV-1967327_26	UniRef90_A0A6N9P4T5	53.5	0.0000000076	ASCH domain-containing protein	N/A
NCBIFam	UHGV-1967327_26	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1967327_26	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_27	phrog_16164	119.5	1.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-1967327_27	476272.RUMHYD_00002	147.0	2.56e-33	N/A	N/A
structural_annotation	UHGV-1967327_27	PF17813,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-1967327_29	phrog_4105	106.7	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-1967327_29	657322.FPR_27220	100.0	5.21e-26	N/A	N/A
PHROG	UHGV-1967327_30	phrog_1129	75.5	4.9e-22	holin	lysis
UniRef90	UHGV-1967327_30	UniRef90_A0A3R6U6I1	153.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1967327_30	1321782.HMPREF1986_00360	107.0	1.32e-29	N/A	N/A
Pfam	UHGV-1967327_30	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1967327_30	PF06946	N/A	N/A	N/A	N/A