UHGV-1971233 (vOTU-088398)

Viral Genome: UHGV-1971233

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1971233
vOTU ID	vOTU-088398
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300022758\|Ga0255597_101421
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.33 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9627
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.27
Jumbo phage	No

Genome content
Genome length (bp)	29,483
GC content	46.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	28
CDS density	93%
Average CDS length (bps)	983.36
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1971233_1	phrog_1535	211.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1971233_1	UniRef90_A0A1C5L9Y5	538.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1971233_1	1304866.K413DRAFT_3046	152.0	8.52e-35	N/A	N/A
COG	UHGV-1971233_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1971233_2	phrog_1194	105.4	3.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-1971233_2	1121866.AUGK01000003_gene1438	98.6	5.08e-25	N/A	N/A
Pfam	UHGV-1971233_2	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1971233_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1971233_3	phrog_6616	549.9	0	tail protein	tail
UniRef90	UHGV-1971233_3	UniRef90_A0A2Y9BMC1	711.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1971233_3	1121866.AUGK01000003_gene1439	318.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1971233_3	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-1971233_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1971233_3	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1971233_4	phrog_14959	102.1	0	N/A	unknown function
UniRef90	UHGV-1971233_4	UniRef90_UPI001896B02B	2403.0	0	BspA family leucine-rich repeat surface protein	N/A
eggNOG-mapper	UHGV-1971233_4	1127696.HMPREF9134_00818	238.0	0	N/A	N/A
Pfam	UHGV-1971233_4	PF08757	N/A	N/A	CotH kinase protein	CotH
Pfam	UHGV-1971233_4	PF03382	N/A	N/A	N/A	DUF285
PHROG	UHGV-1971233_6	phrog_199	92.2	5.2e-27	holin	lysis
UniRef90	UHGV-1971233_6	UniRef90_A0A4P9CF89	236.0	0	Holin	N/A
eggNOG-mapper	UHGV-1971233_6	887325.HMPREF0381_0407	172.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-1971233_6	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1971233_6	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1971233_6	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1971233_6	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1971233_7	K07273	188.3	0	acm; lysozyme	N/A
PHROG	UHGV-1971233_7	phrog_291	199.7	0	endolysin	lysis
UniRef90	UHGV-1971233_7	UniRef90_A0A1H0P8B7	616.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-1971233_7	1235798.C817_00299	302.0	0	family 25	N/A
Pfam	UHGV-1971233_7	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1971233_7	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1971233_7	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1971233_7	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
KOfam	UHGV-1971233_9	K06400	405.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1971233_9	phrog_95	414.1	0	integrase	integration and excision
UniRef90	UHGV-1971233_9	UniRef90_A0A4P9C5X2	875.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1971233_9	1203606.HMPREF1526_00251	312.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1971233_9	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1971233_9	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1971233_9	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1971233_9	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1971233_9	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1971233_10	K06223	161.6	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1971233_10	phrog_56	136.9	1.90001e-40	DNA methyltransferase	other
UniRef90	UHGV-1971233_10	UniRef90_A0A1E7S543	561.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-1971233_10	903814.ELI_3240	561.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1971233_10	MTase_II_00144	316.3	0	Type II methyltransferase	RM
Pfam	UHGV-1971233_10	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1971233_10	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1971233_10	PF02086,MF_01872,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-1971233_11	K07459	73.0	6.6e-22	ybjD; putative ATP-dependent endonuclease of the OLD family	N/A
PHROG	UHGV-1971233_11	phrog_3940	500.4	0	N/A	unknown function
UniRef90	UHGV-1971233_11	UniRef90_A0A1H0PDK9	1125.0	0	AAA domain-containing protein, putative AbiEii toxin, Type IV TA system	N/A
eggNOG-mapper	UHGV-1971233_11	1145276.T479_20770	565.0	0	AAA ATPase domain	N/A
PADLOC	UHGV-1971233_11	retron_type_I_B1_atpase_toprim_cluster22_2	44.8	0.000000000000013	N/A	Retron
Pfam	UHGV-1971233_11	PF13175	N/A	N/A	AAA ATPase domain	AAA_15
Pfam	UHGV-1971233_11	PF13304	N/A	N/A	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
COG	UHGV-1971233_11	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-1971233_11	PF11398,MF_00365,NF041760,COG4938	N/A	N/A	N/A	N/A
KOfam	UHGV-1971233_13	K22300	59.3	9e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1971233_13	phrog_4	53.1	0.000000000000008	transcriptional repressor	transcription regulation
UniRef90	UHGV-1971233_13	UniRef90_UPI00189E0F3C	221.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1971233_13	903814.ELI_1263	191.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-1971233_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1971233_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1971233_13	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1971233_16	phrog_424	135.2	5e-40	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1971233_16	UniRef90_A0A6N7WLV2	448.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1971233_16	903814.ELI_3131	337.0	0	sulfate reduction	N/A
PADLOC	UHGV-1971233_16	SspD_00001	50.3	0.00000000000008	SspD	SSP
Pfam	UHGV-1971233_16	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1971233_16	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1971233_16	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1971233_17	phrog_997	104.5	9.5e-31	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1971233_17	UniRef90_H6LCD4	120.0	3.13e-33	Replication terminator protein phage-like protein	N/A
eggNOG-mapper	UHGV-1971233_17	903814.ELI_3228	211.0	0	N/A	N/A
PHROG	UHGV-1971233_18	phrog_1029	235.2	0	N/A	unknown function
UniRef90	UHGV-1971233_18	UniRef90_H6LCD3	219.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-1971233_18	903814.ELI_3227	318.0	0	N/A	N/A
structural_annotation	UHGV-1971233_18	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-1971233_21	K14440	206.9	0	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1971233_21	phrog_62	358.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1971233_21	UniRef90_A0A4V1GMK5	1026.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1971233_21	903814.ELI_3224	1130.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-1971233_21	ZorD1_00007	146.4	2.70451e-43	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1971233_21	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1971233_21	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1971233_21	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1971233_21	PF04851,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1971233_22	phrog_2378	58.6	4.8e-17	N/A	unknown function
UniRef90	UHGV-1971233_22	UniRef90_A0A1T4XFT8	75.1	0.0000000000000134	Ubiquinol-cytochrome C chaperone	N/A
eggNOG-mapper	UHGV-1971233_22	903814.ELI_3223	267.0	0	N/A	N/A
PHROG	UHGV-1971233_23	phrog_23155	213.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1971233_23	903814.ELI_3222	495.0	0	N/A	N/A
structural_annotation	UHGV-1971233_23	PF18897	N/A	N/A	N/A	N/A
PHROG	UHGV-1971233_24	phrog_8841	526.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1971233_24	UniRef90_UPI00189BD5AE	655.0	0	N/A	N/A
eggNOG-mapper	UHGV-1971233_24	903814.ELI_3221	1769.0	0	N/A	N/A
Pfam	UHGV-1971233_24	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
Pfam	UHGV-1971233_24	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
Pfam	UHGV-1971233_24	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1971233_24	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1971233_24	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1971233_24	PF06048,PF18662,MF_00016,NF005477,COG5519,COG4643	N/A	N/A	N/A	N/A
PHROG	UHGV-1971233_25	phrog_93	42.5	0.0000000000071	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1971233_25	UniRef90_U2M8L9	75.1	0.00000000000000733	VRR-NUC domain protein	N/A
eggNOG-mapper	UHGV-1971233_25	879310.HMPREF9162_1661	75.5	8.71e-16	VRR_NUC	N/A
COG	UHGV-1971233_25	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
AcrCatalog	UHGV-1971233_26	cluster_218951	143.0	0	NA	N/A
eggNOG-mapper	UHGV-1971233_27	411902.CLOBOL_05639	60.5	0.000000000167	N/A	N/A
PHROG	UHGV-1971233_28	phrog_355	45.8	0.00000000000066	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1971233_28	UniRef90_A0A4P9C641	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-1971233_28	936573.HMPREF1147_1706	50.1	0.0000022	N/A	N/A
Pfam	UHGV-1971233_28	PF14359	N/A	N/A	N/A	DUF4406