UHGV-1971238 (vOTU-097885)

Viral Genome: UHGV-1971238

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1971238
vOTU ID	vOTU-097885
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300022758\|Ga0255597_101422
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.61 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.15
Jumbo phage	No

Genome content
Genome length (bp)	26,306
GC content	38.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	92%
Average CDS length (bps)	573.21
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 77.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1971238_1	phrog_3490	139.7	1.49995e-41	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1971238_1	UniRef90_R6N0P8	182.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1971238_1	476272.RUMHYD_01740	168.0	0	ERCC4 domain	N/A
Pfam	UHGV-1971238_1	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-1971238_1	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-1971238_1	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_2	phrog_18107	101.1	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1971238_2	476272.RUMHYD_02831	168.0	0	N/A	N/A
structural_annotation	UHGV-1971238_2	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_3	phrog_2872	254.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1971238_3	UniRef90_A0A316RHU5	304.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1971238_3	754027.HMPREF9554_00709	227.0	0	N/A	N/A
Pfam	UHGV-1971238_3	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1971238_3	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1971238_5	K05925	98.0	1.1e-28	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-1971238_5	phrog_359	243.5	0	DNA methyltransferase	other
UniRef90	UHGV-1971238_5	UniRef90_C4Z5Z5	216.0	0	Site-specific DNA-methyltransferase (Adenine-specific)	N/A
eggNOG-mapper	UHGV-1971238_5	1235800.C819_00509	213.0	0	MT-A70	N/A
PADLOC	UHGV-1971238_5	MTase_II_00048	223.8	0	Type II methyltransferase	RM
Pfam	UHGV-1971238_5	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-1971238_5	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-1971238_5	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
Pfam	UHGV-1971238_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1971238_7	PF20432,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_9	phrog_750	126.6	7.5e-38	N/A	unknown function
eggNOG-mapper	UHGV-1971238_9	742723.HMPREF9477_00931	64.7	0.00000000000792	N/A	N/A
structural_annotation	UHGV-1971238_9	PF03444,COG5045	N/A	N/A	N/A	N/A
UniRef90	UHGV-1971238_12	UniRef90_UPI00163A3CDC	72.0	0.00000000000000333	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1971238_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1971238_12	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1971238_12	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1971238_13	K01356	157.4	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1971238_13	phrog_4	114.0	1.7e-33	transcriptional repressor	transcription regulation
UniRef90	UHGV-1971238_13	UniRef90_A0A348Z949	203.0	0	Repressor LexA	N/A
eggNOG-mapper	UHGV-1971238_13	1262914.BN533_00809	154.0	2.24208e-44	Peptidase S24-like	N/A
PADLOC	UHGV-1971238_13	retron_type_VI_hth_cluster2_1	45.0	0.00000000000017	N/A	Retron
Pfam	UHGV-1971238_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1971238_13	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1971238_13	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1971238_13	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_14	phrog_14275	57.6	2.2e-16	N/A	unknown function
UniRef90	UHGV-1971238_14	UniRef90_UPI0003F7C672	114.0	3.92e-30	FxLYD domain-containing protein	N/A
eggNOG-mapper	UHGV-1971238_14	1031288.AXAA01000044_gene1983	114.0	6.57e-31	N/A	N/A
NCBIFam	UHGV-1971238_14	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
KOfam	UHGV-1971238_15	K14059	143.5	2.59941e-42	int; integrase	N/A
PHROG	UHGV-1971238_15	phrog_1	148.3	6.5861e-44	integrase	integration and excision
UniRef90	UHGV-1971238_15	UniRef90_R6ZYN0	297.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1971238_15	1095750.HMPREF9970_1688	275.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1971238_15	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1971238_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1971238_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1971238_15	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1971238_18	1235800.C819_03386	56.6	0.000000000456	N/A	N/A
structural_annotation	UHGV-1971238_18	PF03869,NF008671,COG4710	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1971238_19	cluster_13845	29.3	0.000896	NA	N/A
eggNOG-mapper	UHGV-1971238_20	1031288.AXAA01000014_gene407	66.2	0.000000000013	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-1971238_20	PF02556,MF_00821,NF004392,COG1952	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_21	phrog_2339	45.1	0.0000000000012	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1971238_21	UniRef90_A0A7U9N515	92.4	2.69e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1971238_21	1410625.JHWK01000002_gene391	78.6	2.2e-17	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1971238_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1971238_21	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
eggNOG-mapper	UHGV-1971238_22	857293.CAAU_1766	53.1	0.000000611	N/A	N/A
structural_annotation	UHGV-1971238_22	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_23	phrog_1129	91.7	3.6e-27	holin	lysis
UniRef90	UHGV-1971238_23	UniRef90_UPI001C124A7D	97.8	4.51e-24	phage holin family protein	N/A
eggNOG-mapper	UHGV-1971238_23	537013.CLOSTMETH_01754	93.2	4.85e-23	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1971238_23	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
PHROG	UHGV-1971238_24	phrog_4105	44.4	0.0000000000025	N/A	unknown function
KOfam	UHGV-1971238_25	K01447	47.1	0.00000000000038	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1971238_25	phrog_7698	165.3	0	endolysin	lysis
UniRef90	UHGV-1971238_25	UniRef90_A0A353JBB4	279.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1971238_25	293826.Amet_2548	195.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1971238_25	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1971238_25	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1971238_25	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_27	phrog_24267	61.1	1.6e-18	N/A	unknown function
UniRef90	UHGV-1971238_27	UniRef90_A0A412AXT4	109.0	3.21e-23	N/A	N/A
eggNOG-mapper	UHGV-1971238_27	33035.JPJF01000023_gene3223	106.0	3.04e-24	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-1971238_27	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1971238_27	PF10651,NF040788,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_28	phrog_1067	424.1	0	minor head protein	head and packaging
UniRef90	UHGV-1971238_28	UniRef90_A0A1C6H6B4	542.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1971238_28	1160721.RBI_I01574	434.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1971238_28	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1971238_28	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1971238_28	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1971238_28	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_29	phrog_33	89.6	6.1e-26	distal tail protein Dit	tail
UniRef90	UHGV-1971238_29	UniRef90_A0A1C6H6D2	209.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1971238_29	1497679.EP56_07715	158.0	2.8026e-45	tail component	N/A
COG	UHGV-1971238_29	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1971238_29	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_30	phrog_23464	253.1	0	N/A	unknown function
UniRef90	UHGV-1971238_30	UniRef90_A0A1C6H5M9	326.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1971238_30	1121428.DESHY_20147___1	255.0	0	TIGRFAM phage tail tape measure protein, TP901 family, core region	N/A
COG	UHGV-1971238_30	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1971238_30	PF20155,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_31	phrog_3033	64.1	1.8e-18	N/A	unknown function
UniRef90	UHGV-1971238_31	UniRef90_A0A174UN01	62.8	0.00000000000579	Phage-like protein	N/A
eggNOG-mapper	UHGV-1971238_31	1341157.RF007C_02605	74.3	2.57e-17	N/A	N/A
PHROG	UHGV-1971238_32	phrog_709	116.8	1.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-1971238_32	1410624.JNKK01000017_gene1983	144.0	5.67526e-43	N/A	N/A
structural_annotation	UHGV-1971238_32	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_33	phrog_88	137.1	1.10001e-40	major tail protein	tail
UniRef90	UHGV-1971238_33	UniRef90_R9N908	175.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-1971238_33	1235798.C817_02573	175.0	0	phage major tail protein, phi13 family	N/A
Pfam	UHGV-1971238_33	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1971238_33	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1971238_33	PF06488,PF18316,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_34	phrog_78	45.6	0.0000000000014	tail terminator	connector
UniRef90	UHGV-1971238_34	UniRef90_U2SBX3	100.0	2.3e-25	HTH merR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1971238_34	471875.RUMLAC_02244	103.0	2.49e-27	N/A	N/A
structural_annotation	UHGV-1971238_34	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_35	phrog_5	56.2	9.8e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-1971238_35	UniRef90_UPI0019581735	115.0	1.06e-30	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1971238_35	411471.SUBVAR_05855	112.0	4.11e-30	N/A	N/A
Pfam	UHGV-1971238_35	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1971238_35	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_36	phrog_1951	76.3	3.2e-22	head-tail adaptor	connector
UniRef90	UHGV-1971238_36	UniRef90_A0A2V2GSS5	96.3	1.1e-23	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1971238_36	1226322.HMPREF1545_00118	78.6	1.5e-17	N/A	N/A
structural_annotation	UHGV-1971238_36	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_37	phrog_2550	84.4	6.8e-25	N/A	unknown function
UniRef90	UHGV-1971238_37	UniRef90_UPI001E35E63D	77.8	7.4e-17	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1971238_37	1226322.HMPREF1545_00117	108.0	1.34e-29	N/A	N/A
structural_annotation	UHGV-1971238_37	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_38	phrog_10	159.8	0	major head protein	head and packaging
UniRef90	UHGV-1971238_38	UniRef90_A0A1Y4R494	525.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1971238_38	1226322.HMPREF1545_00116	356.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1971238_38	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1971238_38	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1971238_38	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1971238_38	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1971238_38	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1971238_39	K06904	143.3	2.40042e-42	N/A	N/A
PHROG	UHGV-1971238_39	phrog_80	163.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1971238_39	UniRef90_A0A1C6H687	336.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-1971238_39	1226322.HMPREF1545_00115	249.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1971238_39	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1971238_39	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1971238_39	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1971238_39	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_40	phrog_12	181.9	0	portal protein	head and packaging
UniRef90	UHGV-1971238_40	UniRef90_A0A0D8IVL0	637.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1971238_40	1226322.HMPREF1545_00114	523.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1971238_40	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1971238_40	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1971238_40	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1971238_40	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1971238_41	phrog_9	289.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1971238_41	UniRef90_A0A0D8IV16	941.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1971238_41	1226322.HMPREF1545_00113	814.0	0	Phage Terminase	N/A
Pfam	UHGV-1971238_41	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1971238_41	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1971238_41	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1971238_41	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A