UHGV-1973799 (vOTU-064911)

Viral Genome: UHGV-1973799

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1973799
vOTU ID	vOTU-064911
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300014791\|Ga0134447_1000097\|provirus_19196_56038
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9744
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.69
Jumbo phage	No

Genome content
Genome length (bp)	34,867
GC content	56.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	94%
Average CDS length (bps)	695.30
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1973799_1	phrog_1129	64.5	1.2e-18	holin	lysis
UniRef90	UHGV-1973799_1	UniRef90_R5D220	102.0	1.79e-26	Putative holin	N/A
eggNOG-mapper	UHGV-1973799_1	665956.HMPREF1032_03272	98.6	6.31e-26	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1973799_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1973799_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_2	phrog_1863	59.2	1.6e-17	N/A	unknown function
UniRef90	UHGV-1973799_2	UniRef90_UPI001F223E8B	68.2	0.000000000000329	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1973799_2	1226322.HMPREF1545_04027	65.9	0.000000000000438	N/A	N/A
KOfam	UHGV-1973799_3	K01447	116.9	2.2e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1973799_3	phrog_670	134.7	8.9e-40	endolysin	lysis
UniRef90	UHGV-1973799_3	UniRef90_A0A3D1VCL7	405.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1973799_3	97138.C820_00738	226.0	0	Ami_2	N/A
Pfam	UHGV-1973799_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
NCBIFam	UHGV-1973799_3	NF040910.1	N/A	N/A	CD1375 family protein	N/A
COG	UHGV-1973799_3	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1973799_3	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1973799_4	UniRef90_UPI001BF10870	244.0	0	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-1973799_4	610130.Closa_0587	85.9	5.68e-16	Tyrosine phosphatase family	N/A
Pfam	UHGV-1973799_4	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-1973799_4	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
structural_annotation	UHGV-1973799_4	PF13350,PF18998,PF17425,COG2365	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_5	K16628	57.8	4.6e-17	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1973799_5	phrog_6320	72.6	6.2e-21	tail fiber protein	tail
Pfam	UHGV-1973799_5	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1973799_7	phrog_6616	72.3	1.1e-21	tail protein	tail
structural_annotation	UHGV-1973799_7	PF13550,PF09931,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1973799_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_9	phrog_1535	119.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1973799_9	UniRef90_A0A810PX76	95.5	1.07e-16	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1973799_9	1235797.C816_04182	176.0	2.07392e-43	SLT domain	N/A
COG	UHGV-1973799_9	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_10	phrog_706	107.4	1.3e-31	N/A	unknown function
UniRef90	UHGV-1973799_10	UniRef90_UPI00164D7633	175.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1973799_10	693746.OBV_18170	168.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1973799_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1973799_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_11	phrog_11299	101.2	9.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-1973799_11	1449050.JNLE01000003_gene3883	66.2	0.0000000000101	N/A	N/A
structural_annotation	UHGV-1973799_11	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_12	phrog_3099	87.5	1.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1973799_12	693746.OBV_18150	223.0	0	N/A	N/A
structural_annotation	UHGV-1973799_12	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_13	phrog_3266	61.3	1.4e-17	tail completion	connector
eggNOG-mapper	UHGV-1973799_13	476272.RUMHYD_01781	115.0	1.24e-30	N/A	N/A
structural_annotation	UHGV-1973799_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_14	phrog_556	63.7	7.6e-19	minor head protein	head and packaging
UniRef90	UHGV-1973799_14	UniRef90_A0A1H7MNM8	116.0	2.3e-30	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1973799_14	476272.RUMHYD_01780	113.0	3.41e-30	N/A	N/A
Pfam	UHGV-1973799_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1973799_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_15	phrog_3366	49.6	0.000000000000074	N/A	unknown function
structural_annotation	UHGV-1973799_15	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_16	phrog_541	68.7	7.7e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-1973799_16	476272.RUMHYD_01778	74.3	0.0000000000000111	N/A	N/A
PHROG	UHGV-1973799_17	phrog_267	54.2	0.000000000000002	major head protein	head and packaging
eggNOG-mapper	UHGV-1973799_17	1235799.C818_04223	162.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1973799_17	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_18	phrog_194	42.7	0.0000000000098	head scaffolding protein	head and packaging
UniRef90	UHGV-1973799_18	UniRef90_UPI001C0EBA51	127.0	3.38e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1973799_18	1539298.JO41_08210	63.2	0.000000000913	Phage minor structural protein GP20	N/A
Pfam	UHGV-1973799_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1973799_18	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_19	phrog_581	255.9	0	minor head protein	head and packaging
UniRef90	UHGV-1973799_19	UniRef90_A0A355KVT5	347.0	0	Phage capsid protein (Fragment)	N/A
eggNOG-mapper	UHGV-1973799_19	33035.JPJF01000106_gene3134	233.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1973799_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1973799_19	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-1973799_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1973799_19	PF06152,PF18812	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_20	phrog_533	212.2	0	portal protein	head and packaging
UniRef90	UHGV-1973799_20	UniRef90_A0A173TY48	344.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1973799_20	33035.JPJF01000106_gene3135	326.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1973799_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_21	phrog_1233	95.2	7.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-1973799_21	1415774.U728_832	93.2	3.72e-23	N/A	N/A
structural_annotation	UHGV-1973799_21	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_22	K06909	396.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1973799_22	phrog_5653	146.1	9.52883e-44	terminase large subunit	head and packaging
UniRef90	UHGV-1973799_22	UniRef90_A0A416S378	638.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1973799_22	33035.JPJF01000106_gene3136	603.0	0	Terminase small subunit	N/A
Pfam	UHGV-1973799_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-1973799_22	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1973799_22	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1973799_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1973799_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1973799_22	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_23	phrog_36	64.0	2.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1973799_23	UniRef90_A0A7D6VSS6	65.9	0.0000000000715	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1973799_23	397290.C810_01240	62.4	0.000000000282	N/A	N/A
Pfam	UHGV-1973799_23	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1973799_23	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_25	K01160	50.5	0.000000000000057	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1973799_25	phrog_140	89.7	3.6e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1973799_25	UniRef90_R6ING7	160.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1973799_25	1262914.BN533_01944	160.0	0	crossover junction endodeoxyribonuclease	N/A
Pfam	UHGV-1973799_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1973799_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1973799_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_26	K07505	421.3	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1973799_26	phrog_2597	1169.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1973799_26	UniRef90_A0A1E3C4V4	1018.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1973799_26	1232449.BAHV02000008_gene621	1003.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1973799_26	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1973799_26	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1973799_26	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1973799_26	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_27	K17677	326.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1973799_27	phrog_16	262.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1973799_27	UniRef90_A0A391NZY2	803.0	0	Putative DEAD box family helicase, phage associated	N/A
eggNOG-mapper	UHGV-1973799_27	394503.Ccel_3307	798.0	0	helicase	N/A
PADLOC	UHGV-1973799_27	mREase_IV_00005	131.6	6.7e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1973799_27	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1973799_27	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1973799_27	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1973799_27	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_28	phrog_2698	182.0	0	N/A	unknown function
UniRef90	UHGV-1973799_28	UniRef90_A0A6G3M4N7	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-1973799_28	394503.Ccel_3308	155.0	0	N/A	N/A
structural_annotation	UHGV-1973799_28	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_29	phrog_124	232.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1973799_29	UniRef90_A0A7C6K8G1	379.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1973799_29	999413.HMPREF1094_00235	375.0	0	AAA domain	N/A
Pfam	UHGV-1973799_29	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1973799_29	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_30	K03546	72.7	4.6e-21	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1973799_30	phrog_1499	465.3	0	N/A	unknown function
UniRef90	UHGV-1973799_30	UniRef90_A0A3E0QS83	528.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-1973799_30	645991.Sgly_0320	509.0	0	domain protein	N/A
Pfam	UHGV-1973799_30	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1973799_30	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1973799_30	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_31	phrog_3777	43.2	0.000000000004	N/A	unknown function
UniRef90	UHGV-1973799_31	UniRef90_UPI00166EB92C	72.0	0.0000000000000167	N/A	N/A
eggNOG-mapper	UHGV-1973799_31	767817.Desgi_3545	51.6	0.000000477	N/A	N/A
Pfam	UHGV-1973799_31	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-1973799_31	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-1973799_31	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-1973799_32	phrog_474	117.6	1.7e-34	phosphofructokinase	other
UniRef90	UHGV-1973799_32	UniRef90_G9RWI8	111.0	4.32e-29	N/A	N/A
eggNOG-mapper	UHGV-1973799_32	665956.HMPREF1032_00639	111.0	7.24e-30	N/A	N/A
Pfam	UHGV-1973799_32	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1973799_32	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_41	K22300	67.0	3.9e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1973799_41	phrog_4	55.4	0.0000000000000017	transcriptional repressor	transcription regulation
UniRef90	UHGV-1973799_41	UniRef90_A0A174LY22	139.0	3.19e-40	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-1973799_41	445972.ANACOL_03315	140.0	1.32002e-41	N/A	N/A
Pfam	UHGV-1973799_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1973799_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1973799_41	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_43	K07729	59.0	1.1e-16	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1973799_43	UniRef90_R5AVU4	93.2	9.67e-24	CI-like repressor	N/A
eggNOG-mapper	UHGV-1973799_43	1120971.AUCA01000073_gene2914	57.4	0.000000000276	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1973799_43	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1973799_43	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1973799_43	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_44	K07448	129.3	3.1e-38	mrr; restriction system protein	N/A
PHROG	UHGV-1973799_44	phrog_19856	48.3	0.00000000000011	N/A	unknown function
UniRef90	UHGV-1973799_44	UniRef90_A0A5C1WIF7	85.1	0.00000000000000214	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-1973799_44	1235790.C805_00010	147.0	2.58e-40	Restriction endonuclease	N/A
PADLOC	UHGV-1973799_44	ZorD1_00005	73.9	1.5e-21	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1973799_44	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-1973799_44	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
structural_annotation	UHGV-1973799_44	PF04471,MF_00722,NF040854,COG1787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1973799_45	PF21227	N/A	N/A	N/A	N/A
KOfam	UHGV-1973799_46	K06400	254.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1973799_46	phrog_95	249.7	0	integrase	integration and excision
UniRef90	UHGV-1973799_46	UniRef90_UPI0003130B23	293.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1973799_46	1235798.C817_01900	212.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1973799_46	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1973799_46	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1973799_46	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1973799_46	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1973799_47	632335.Calkr_0056	61.2	0.0000000622	protein carbamoylation	N/A
COG	UHGV-1973799_47	COG0068	N/A	N/A	Hydrogenase maturation factor HypF (carbamoyltransferase)	N/A