UHGV-1989719 (vOTU-001796)

Viral Genome: UHGV-1989719

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1989719
vOTU ID	vOTU-001796
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300023494\|Ga0257057_100433
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.53
Jumbo phage	No

Genome content
Genome length (bp)	44,251
GC content	45.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	89%
Average CDS length (bps)	562.37
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1989719_3	UniRef90_A0A3A9H7X9	49.3	0.00000227	Cag pathogenicity island protein	N/A
PHROG	UHGV-1989719_4	phrog_99	52.2	0.0000000000000077	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1989719_4	UniRef90_K1UQ73	210.0	0	AP2 domain protein	N/A
eggNOG-mapper	UHGV-1989719_4	1304866.K413DRAFT_4685	180.0	0	N/A	N/A
AcrCatalog	UHGV-1989719_4	cluster_5564	61.6	0.0000000000000307	NA	N/A
structural_annotation	UHGV-1989719_4	PF00847	N/A	N/A	N/A	N/A
KOfam	UHGV-1989719_7	K07273	142.6	3.30006e-42	acm; lysozyme	N/A
PHROG	UHGV-1989719_7	phrog_291	129.8	2.6e-38	endolysin	lysis
UniRef90	UHGV-1989719_7	UniRef90_A0A1C5ZRX7	528.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1989719_7	1226325.HMPREF1548_03449	179.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1989719_7	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1989719_7	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1989719_7	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_8	phrog_918	126.6	5.7e-38	N/A	unknown function
UniRef90	UHGV-1989719_8	UniRef90_UPI000494EEFE	149.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1989719_8	357809.Cphy_2966	140.0	1.86933e-42	N/A	N/A
Pfam	UHGV-1989719_8	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1989719_8	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_9	phrog_355	57.6	2.1e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1989719_9	UniRef90_UPI001C3A3ABC	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-1989719_9	397290.C810_05229	164.0	0	N/A	N/A
structural_annotation	UHGV-1989719_9	PF14359	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1989719_10	411470.RUMGNA_00254	98.2	6.24e-26	N/A	N/A
UniRef90	UHGV-1989719_11	UniRef90_U2BK79	125.0	3.08e-33	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	N/A
eggNOG-mapper	UHGV-1989719_11	1226325.HMPREF1548_00749	125.0	5.16e-34	N/A	N/A
PHROG	UHGV-1989719_12	phrog_18593	127.8	6.4e-38	N/A	unknown function
UniRef90	UHGV-1989719_12	UniRef90_R5HAU4	282.0	0	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-1989719_12	411460.RUMTOR_02099	140.0	1.58e-39	N/A	N/A
Pfam	UHGV-1989719_12	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1989719_12	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_15	phrog_18725	113.0	2.4e-33	N/A	unknown function
eggNOG-mapper	UHGV-1989719_15	1120746.CCNL01000014_gene2212	89.7	6.44e-21	N/A	N/A
PHROG	UHGV-1989719_16	phrog_13879	300.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1989719_16	1120746.CCNL01000014_gene2107	305.0	0	N/A	N/A
structural_annotation	UHGV-1989719_16	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_17	phrog_1194	52.3	0.0000000000000087	N/A	unknown function
eggNOG-mapper	UHGV-1989719_17	1120746.CCNL01000014_gene2106	130.0	3.3e-37	N/A	N/A
structural_annotation	UHGV-1989719_17	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_18	phrog_1535	246.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1989719_18	1235800.C819_00476	209.0	0	tape measure	N/A
COG	UHGV-1989719_18	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1989719_19	phrog_706	118.8	4e-35	N/A	unknown function
UniRef90	UHGV-1989719_19	UniRef90_R5H1B0	392.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1989719_19	1235790.C805_00084	185.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1989719_19	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1989719_19	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-1989719_20	UniRef90_A0A2Z4QA03	79.0	5.17e-16	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-1989719_20	397290.C810_05234	102.0	1.04e-25	N/A	N/A
structural_annotation	UHGV-1989719_20	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_21	phrog_3099	142.6	1.90016e-42	N/A	unknown function
eggNOG-mapper	UHGV-1989719_21	397290.C810_05233	212.0	0	N/A	N/A
structural_annotation	UHGV-1989719_21	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_22	phrog_3266	92.1	4.3e-27	tail completion	connector
eggNOG-mapper	UHGV-1989719_22	476272.RUMHYD_01781	129.0	1.35e-35	N/A	N/A
structural_annotation	UHGV-1989719_22	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_23	phrog_3366	108.5	4.6e-32	N/A	unknown function
eggNOG-mapper	UHGV-1989719_23	476272.RUMHYD_01779	143.0	1.18998e-41	N/A	N/A
structural_annotation	UHGV-1989719_23	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_24	phrog_8680	241.8	0	N/A	unknown function
UniRef90	UHGV-1989719_24	UniRef90_UPI0015711ED3	379.0	0	N/A	N/A
eggNOG-mapper	UHGV-1989719_24	411470.RUMGNA_02208	321.0	0	N/A	N/A
Pfam	UHGV-1989719_24	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1989719_24	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_26	phrog_541	98.3	4.5e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-1989719_26	476272.RUMHYD_01778	116.0	8.04e-31	N/A	N/A
PHROG	UHGV-1989719_27	phrog_544	169.7	0	major head protein	head and packaging
UniRef90	UHGV-1989719_27	UniRef90_A0A395X7A1	508.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1989719_27	476272.RUMHYD_01776	351.0	0	N/A	N/A
structural_annotation	UHGV-1989719_27	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_28	phrog_194	74.4	1.9e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-1989719_28	UniRef90_UPI001D14C9C8	237.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1989719_28	476272.RUMHYD_01775	205.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1989719_28	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1989719_29	phrog_28802	298.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1989719_29	476272.RUMHYD_01772	243.0	0	N/A	N/A
PHROG	UHGV-1989719_30	phrog_20016	207.5	0	N/A	unknown function
UniRef90	UHGV-1989719_30	UniRef90_A0A345BPX4	107.0	4.57e-27	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1989719_30	397290.C810_05214	99.8	5.52e-25	N/A	N/A
structural_annotation	UHGV-1989719_30	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_31	phrog_16490	243.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1989719_31	476272.RUMHYD_01770	265.0	0	N/A	N/A
PHROG	UHGV-1989719_32	phrog_22984	114.8	3.2e-34	N/A	unknown function
PHROG	UHGV-1989719_33	phrog_21718	224.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1989719_33	476272.RUMHYD_01768	221.0	0	N/A	N/A
UniRef90	UHGV-1989719_34	UniRef90_A0A843HPX3	71.6	0.00000000000000393	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1989719_34	1235790.C805_00057	67.8	0.0000000000000226	N/A	N/A
structural_annotation	UHGV-1989719_34	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_35	phrog_3754	84.3	1.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1989719_35	476272.RUMHYD_01764	185.0	0	N/A	N/A
PHROG	UHGV-1989719_36	phrog_581	215.6	0	minor head protein	head and packaging
UniRef90	UHGV-1989719_36	UniRef90_UPI000E4E3D5A	451.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1989719_36	663278.Ethha_0499	176.0	0	N/A	N/A
Pfam	UHGV-1989719_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1989719_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1989719_36	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_37	phrog_556	83.7	1.6e-24	minor head protein	head and packaging
UniRef90	UHGV-1989719_37	UniRef90_UPI001C0ECC47	207.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1989719_37	665956.HMPREF1032_03062	82.4	4.63e-18	Minor capsid protein	N/A
Pfam	UHGV-1989719_37	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1989719_37	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1989719_38	476272.RUMHYD_00002	142.0	2.59e-32	N/A	N/A
PHROG	UHGV-1989719_40	phrog_533	288.8	0	portal protein	head and packaging
UniRef90	UHGV-1989719_40	UniRef90_A0A1C6CDM8	634.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1989719_40	33035.JPJF01000106_gene3135	534.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1989719_40	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1989719_41	K06909	380.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1989719_41	phrog_3717	144.9	4.30199e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1989719_41	UniRef90_R5GX83	851.0	0	Prophage LambdaCh01 terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-1989719_41	33035.JPJF01000106_gene3136	462.0	0	Terminase small subunit	N/A
Pfam	UHGV-1989719_41	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1989719_41	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1989719_41	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1989719_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1989719_41	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1989719_42	PF07141,NF012144	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1989719_43	476272.RUMHYD_01751	109.0	4.94e-30	N/A	N/A
eggNOG-mapper	UHGV-1989719_44	1235790.C805_00594	48.9	0.000000622	N/A	N/A
PHROG	UHGV-1989719_45	phrog_3886	247.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1989719_45	1298920.KI911353_gene2686	254.0	0	N/A	N/A
KOfam	UHGV-1989719_46	K03744	135.0	6.7e-40	lemA; LemA protein	N/A
PHROG	UHGV-1989719_46	phrog_1383	144.6	3.9937e-43	virion structural protein	head and packaging
UniRef90	UHGV-1989719_46	UniRef90_A0A6N2WCF4	264.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-1989719_46	742740.HMPREF9474_02293	251.0	0	LemA family	N/A
Pfam	UHGV-1989719_46	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-1989719_46	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-1989719_46	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_47	phrog_10714	41.5	0.000000000019	N/A	unknown function
UniRef90	UHGV-1989719_47	UniRef90_R5GX78	205.0	0	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-1989719_47	537007.BLAHAN_05460	53.5	0.0000000698	N/A	N/A
KOfam	UHGV-1989719_50	K00390	64.7	3e-19	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1989719_50	phrog_424	145.5	2.99878e-43	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1989719_50	UniRef90_A0A0X8VBK5	346.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1989719_50	537013.CLOSTMETH_01340	330.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1989719_50	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1989719_50	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1989719_50	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1989719_52	K00558	226.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1989719_52	phrog_116	248.1	0	DNA methyltransferase	other
UniRef90	UHGV-1989719_52	UniRef90_A0A316S1N2	338.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1989719_52	1033733.CAEK01000007_gene1648	244.0	0	Cytosine-specific methyltransferase	N/A
PADLOC	UHGV-1989719_52	MTase_II_00058	275.8	0	Type II methyltransferase	RM
Pfam	UHGV-1989719_52	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1989719_52	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1989719_52	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1989719_52	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1989719_54	PF04936	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_56	phrog_5810	85.5	8.1e-25	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1989719_56	742740.HMPREF9474_03117	177.0	0	N/A	N/A
structural_annotation	UHGV-1989719_56	PF01978,MF_01819,NF041413,COG0735	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1989719_57	PF21715	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_58	phrog_244	77.3	2.6e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1989719_58	1280692.AUJL01000044_gene2344	166.0	0	N/A	N/A
structural_annotation	UHGV-1989719_58	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_59	phrog_398	208.4	0	N/A	unknown function
UniRef90	UHGV-1989719_59	UniRef90_UPI001E5E0390	303.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1989719_59	33035.JPJF01000122_gene2462	299.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1989719_59	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1989719_59	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_60	phrog_14970	252.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1989719_60	411470.RUMGNA_02193	221.0	0	double-strand break repair protein	N/A
COG	UHGV-1989719_60	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1989719_60	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_61	phrog_253	126.4	1.8e-37	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1989719_61	UniRef90_A0A7G9G713	109.0	2.78e-27	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1989719_61	397290.C810_05162	161.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-1989719_61	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1989719_61	PF05565,NF002139	N/A	N/A	N/A	N/A
KOfam	UHGV-1989719_67	K18830	59.8	5.4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1989719_67	phrog_8	54.2	0.000000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-1989719_67	UniRef90_N1ZZY4	119.0	1.97e-32	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1989719_67	97139.C824_05937	119.0	3.31e-33	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1989719_67	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1989719_67	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1989719_67	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1989719_69	phrog_8545	44.7	0.0000000000025	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1989719_69	UniRef90_A0A0V8QJ55	120.0	6.94e-30	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1989719_69	796945.HMPREF1145_0173	114.0	1.13e-28	tRNA_anti-like	N/A
Pfam	UHGV-1989719_69	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1989719_69	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
KOfam	UHGV-1989719_70	K14059	172.7	0	int; integrase	N/A
PHROG	UHGV-1989719_70	phrog_1	164.8	0	integrase	integration and excision
UniRef90	UHGV-1989719_70	UniRef90_A0A6N7W462	465.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1989719_70	1304866.K413DRAFT_1180	406.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1989719_70	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1989719_70	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1989719_70	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1989719_70	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A