UHGV-1989795 (vOTU-120322)

Viral Genome: UHGV-1989795

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1989795
vOTU ID	vOTU-120322
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300028977\|Ga0169635_10133\|provirus_13412_37054
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.89 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9832
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.71
Jumbo phage	No

Genome content
Genome length (bp)	23,643
GC content	41.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	30
CDS density	94%
Average CDS length (bps)	742.30
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1989795_2	phrog_4964	350.9	0	N/A	unknown function
UniRef90	UHGV-1989795_2	UniRef90_A0A3A5Q8M2	362.0	0	Elongation factor G	N/A
PHROG	UHGV-1989795_3	phrog_12732	149.9	7.00649e-45	N/A	unknown function
PHROG	UHGV-1989795_4	phrog_6487	124.4	1.5e-37	N/A	unknown function
UniRef90	UHGV-1989795_4	UniRef90_A0A359YI00	211.0	0	N/A	N/A
eggNOG-mapper	UHGV-1989795_4	999425.HMPREF9186_02053	151.0	2.52234e-43	N/A	N/A
structural_annotation	UHGV-1989795_4	PF05587,NF040788,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_5	phrog_998	339.2	0	endolysin	lysis
UniRef90	UHGV-1989795_5	UniRef90_A0A8B1YVW6	567.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-1989795_5	1069533.Sinf_0802	419.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-1989795_5	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
Pfam	UHGV-1989795_5	PF16775	N/A	N/A	Target recognition domain of lytic exoenzyme	ZoocinA_TRD
COG	UHGV-1989795_5	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1989795_5	PF16775,PF05382,NF008096,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_6	phrog_608	118.2	3.6e-35	holin	lysis
UniRef90	UHGV-1989795_6	UniRef90_I2NHW5	188.0	0	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-1989795_6	585203.SMSK564_1272	107.0	5.85e-29	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1989795_6	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
NCBIFam	UHGV-1989795_6	TIGR01673.1	N/A	N/A	phage holin	N/A
PHROG	UHGV-1989795_7	phrog_4257	156.8	0	N/A	unknown function
UniRef90	UHGV-1989795_7	UniRef90_A0A139QI86	180.0	0	N/A	N/A
eggNOG-mapper	UHGV-1989795_7	1005705.HMPREF9967_1056	196.0	0	N/A	N/A
PHROG	UHGV-1989795_8	phrog_1554	205.1	0	N/A	unknown function
UniRef90	UHGV-1989795_8	UniRef90_A0A4V0EM35	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-1989795_8	1005705.HMPREF9967_1055	283.0	0	N/A	N/A
structural_annotation	UHGV-1989795_8	PF07104	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_10	phrog_2270	288.8	0	N/A	unknown function
UniRef90	UHGV-1989795_10	UniRef90_UPI0012BD39E8	1255.0	0	carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1989795_10	537874.B3GW15_9CAUD	838.0	0	peptidoglycan catabolic process	N/A
NCBIFam	UHGV-1989795_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1989795_10	PF14594,PF07902,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_11	phrog_33	78.7	1.2e-22	distal tail protein Dit	tail
UniRef90	UHGV-1989795_11	UniRef90_UPI0018982A9B	430.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1989795_11	537874.B3GW14_9CAUD	277.0	0	Phage tail protein	N/A
Pfam	UHGV-1989795_11	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1989795_11	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-1989795_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_12	phrog_1293	1120.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1989795_12	UniRef90_UPI001896B40F	1644.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1989795_12	999425.HMPREF9186_02045	1133.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1989795_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1989795_12	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1989795_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1989795_12	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_13	phrog_187	40.5	0.000000000041	head-tail adaptor	connector
UniRef90	UHGV-1989795_13	UniRef90_A0A116MET7	120.0	3.66e-33	N/A	N/A
structural_annotation	UHGV-1989795_13	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_14	phrog_88	148.6	2.94273e-44	major tail protein	tail
UniRef90	UHGV-1989795_14	UniRef90_UPI001BDB41CF	345.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1989795_14	764299.STRIC_0108	249.0	0	Phage tail tube protein	N/A
Pfam	UHGV-1989795_14	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-1989795_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1989795_14	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_15	phrog_78	94.9	6.4e-28	tail terminator	connector
UniRef90	UHGV-1989795_15	UniRef90_W1TYT9	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-1989795_15	1123309.AQYB01000019_gene899	195.0	0	N/A	N/A
structural_annotation	UHGV-1989795_15	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_16	phrog_5	54.0	0.0000000000000046	tail completion or Neck1 protein	connector
UniRef90	UHGV-1989795_16	UniRef90_UPI00066114D3	204.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1989795_16	1123309.AQYB01000019_gene898	145.0	2.07392e-43	N/A	N/A
NCBIFam	UHGV-1989795_16	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1989795_16	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_17	phrog_25	53.9	0.0000000000000021	head closure Hc1	connector
UniRef90	UHGV-1989795_17	UniRef90_UPI001BD9C68B	218.0	0	head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1989795_17	1154860.SAG0136_08105	116.0	3.14e-32	Phage head-tail joining protein	N/A
Pfam	UHGV-1989795_17	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-1989795_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_18	phrog_40	60.7	1.8e-17	head-tail adaptor Ad1	connector
UniRef90	UHGV-1989795_18	UniRef90_UPI00189BB7BE	209.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1989795_18	1225805.J7KDJ3_9CAUD	127.0	5.8e-37	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1989795_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-1989795_18	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1989795_18	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_19	phrog_10	193.7	0	major head protein	head and packaging
UniRef90	UHGV-1989795_19	UniRef90_UPI001BDA9019	696.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1989795_19	764299.STRIC_0102	451.0	0	capsid protein	N/A
Pfam	UHGV-1989795_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1989795_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1989795_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1989795_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1989795_20	K01358	131.5	8.2e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1989795_20	phrog_94	212.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1989795_20	UniRef90_A0A428GXI4	385.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1989795_20	1123309.AQYB01000019_gene894	353.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1989795_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1989795_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1989795_20	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_21	phrog_12	220.7	0	portal protein	head and packaging
UniRef90	UHGV-1989795_21	UniRef90_UPI00189920CB	771.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1989795_21	1403946.Q615_SPAC00127G0138	645.0	0	Phage portal protein	N/A
Pfam	UHGV-1989795_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1989795_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1989795_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1989795_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_22	phrog_9	380.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1989795_22	UniRef90_UPI00189AC00E	1110.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1989795_22	1154860.SAG0136_08065	910.0	0	Terminase	N/A
Pfam	UHGV-1989795_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1989795_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1989795_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1989795_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_23	phrog_83	128.7	3.4e-38	terminase small subunit	head and packaging
UniRef90	UHGV-1989795_23	UniRef90_UPI0018998147	299.0	0	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-1989795_23	1403946.Q615_SPAC00127G0142	197.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1989795_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-1989795_23	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-1989795_23	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1989795_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_24	phrog_144	70.6	2.5e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1989795_24	UniRef90_UPI00158AB17A	215.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1989795_24	1225805.J7KBS6_9CAUD	132.0	1.35e-38	HNH endonuclease	N/A
Pfam	UHGV-1989795_24	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-1989795_25	phrog_36	90.2	2.4e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-1989795_25	UniRef90_UPI00158E126B	245.0	0	N/A	N/A
eggNOG-mapper	UHGV-1989795_25	936580.HMPREF1516_0728	111.0	1.72e-29	sigma factor activity	N/A
Pfam	UHGV-1989795_25	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1989795_25	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1989795_25	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1989795_26	PF10957,NF041389	N/A	N/A	N/A	N/A
PHROG	UHGV-1989795_29	phrog_98	93.8	1.3e-27	N/A	unknown function
UniRef90	UHGV-1989795_29	UniRef90_K8ME96	193.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1989795_29	768486.EHR_02675	79.7	5.05e-17	YopX protein	N/A
Pfam	UHGV-1989795_29	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1989795_29	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1989795_29	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1989795_30	UniRef90_A0A6I3UI15	47.8	0.00000138	N/A	N/A
eggNOG-mapper	UHGV-1989795_30	1095737.HMPREF1110_1213	60.1	0.0000000000666	N/A	N/A