UHGV-2000236 (vOTU-067910)

Viral Genome: UHGV-2000236

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2000236
vOTU ID	vOTU-067910
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029039\|Ga0169649_100151\|provirus_24554_64435
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.43 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.61
Jumbo phage	No

Genome content
Genome length (bp)	35,399
GC content	52.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	45
CDS density	93%
Average CDS length (bps)	728.87
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2000236_1	K06400	321.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2000236_1	phrog_95	328.0	0	integrase	integration and excision
UniRef90	UHGV-2000236_1	UniRef90_A0A6G3M4R6	544.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2000236_1	1120746.CCNL01000014_gene2079	374.0	0	Recombinase	N/A
Pfam	UHGV-2000236_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2000236_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2000236_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2000236_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2000236_1	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_2	phrog_1847	326.4	0	N/A	unknown function
UniRef90	UHGV-2000236_2	UniRef90_D1PLA1	348.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-2000236_2	411471.SUBVAR_05139	348.0	0	T5orf172	N/A
Pfam	UHGV-2000236_2	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-2000236_2	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2000236_2	PF19962	N/A	N/A	N/A	N/A
KOfam	UHGV-2000236_3	K01356	87.1	2.7e-25	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2000236_3	phrog_4	135.8	2.8e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-2000236_3	UniRef90_UPI001D0096C0	395.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2000236_3	1507.HMPREF0262_00168	197.0	0	Peptidase S24-like	N/A
Pfam	UHGV-2000236_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2000236_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2000236_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2000236_3	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-2000236_6	K07727	50.5	0.000000000000052	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-2000236_6	phrog_1373	44.4	0.0000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-2000236_6	UniRef90_UPI001D007243	119.0	7.78e-34	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2000236_6	861454.HMPREF9099_00333	66.6	0.0000000000000923	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2000236_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-2000236_6	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_10	phrog_757	196.4	0	DNA methyltransferase	other
UniRef90	UHGV-2000236_10	UniRef90_A0A355KVL2	345.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2000236_10	748224.HMPREF9436_03069	345.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-2000236_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2000236_10	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-2000236_14	K03546	67.5	1.5e-19	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-2000236_14	phrog_1499	471.5	0	N/A	unknown function
UniRef90	UHGV-2000236_14	UniRef90_A0A3C0II26	710.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-2000236_14	641112.ACOK01000073_gene2873	518.0	0	domain protein	N/A
Pfam	UHGV-2000236_14	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-2000236_14	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2000236_14	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_16	phrog_124	193.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2000236_16	UniRef90_UPI0011620CA2	302.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2000236_16	641112.ACOK01000073_gene2874	416.0	0	AAA domain	N/A
Pfam	UHGV-2000236_16	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2000236_16	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_17	phrog_2698	188.6	0	N/A	unknown function
UniRef90	UHGV-2000236_17	UniRef90_A0A354I850	155.0	4.2039e-45	N/A	N/A
eggNOG-mapper	UHGV-2000236_17	641112.ACOK01000073_gene2875	169.0	0	N/A	N/A
structural_annotation	UHGV-2000236_17	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-2000236_18	K17677	350.2	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-2000236_18	phrog_16	280.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2000236_18	UniRef90_R7GUH4	988.0	0	Helicase C-terminal domain protein	N/A
eggNOG-mapper	UHGV-2000236_18	641112.ACOK01000073_gene2876	817.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-2000236_18	mREase_IV_00005	146.1	2.99878e-43	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2000236_18	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2000236_18	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2000236_18	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2000236_18	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-2000236_19	K07505	378.6	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-2000236_19	phrog_2597	1141.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2000236_19	UniRef90_R7GSM0	1350.0	0	Primase 2	N/A
eggNOG-mapper	UHGV-2000236_19	641112.ACOK01000073_gene2877	966.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-2000236_19	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-2000236_19	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2000236_19	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-2000236_19	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-2000236_20	K01160	62.9	8.7e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2000236_20	phrog_140	95.6	5.5e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2000236_20	UniRef90_A0A3D5KWI4	253.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2000236_20	641112.ACOK01000073_gene2878	175.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2000236_20	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2000236_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2000236_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-2000236_21	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-2000236_21	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-2000236_25	phrog_36	83.0	4.1e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-2000236_25	UniRef90_UPI001D017002	264.0	0	N/A	N/A
Pfam	UHGV-2000236_25	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-2000236_25	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-2000236_25	PF04545,MF_00674,TIGR02980,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_26	phrog_606	76.4	3.9e-22	terminase small subunit	head and packaging
UniRef90	UHGV-2000236_26	UniRef90_UPI001D088AD3	174.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-2000236_26	762984.HMPREF9445_00166	52.8	0.00000206	DNA-packaging protein gp3	N/A
Pfam	UHGV-2000236_26	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-2000236_26	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-2000236_27	K06909	94.6	1.2e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2000236_27	phrog_2	80.2	3.9e-23	terminase large subunit	head and packaging
UniRef90	UHGV-2000236_27	UniRef90_A0A373XSH6	640.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2000236_27	1282664.H354_06621	532.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-2000236_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2000236_27	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_28	phrog_533	263.8	0	portal protein	head and packaging
UniRef90	UHGV-2000236_28	UniRef90_A0A3D5LTG9	513.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2000236_28	742740.HMPREF9474_03501	485.0	0	N/A	N/A
structural_annotation	UHGV-2000236_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_29	phrog_581	260.4	0	minor head protein	head and packaging
UniRef90	UHGV-2000236_29	UniRef90_A0A174B2Q8	451.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2000236_29	1151292.QEW_4396	280.0	0	COG3209 Rhs family protein	N/A
Pfam	UHGV-2000236_29	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2000236_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2000236_29	PF06152,PF03496,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_30	phrog_872	101.3	9.4e-30	N/A	unknown function
UniRef90	UHGV-2000236_30	UniRef90_A0A350S1T8	142.0	2.07953e-42	N/A	N/A
eggNOG-mapper	UHGV-2000236_30	1235800.C819_00487	142.0	4.9606e-43	N/A	N/A
Pfam	UHGV-2000236_30	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-2000236_30	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-2000236_30	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_31	phrog_2303	93.3	3e-27	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-2000236_31	483218.BACPEC_01156	108.0	6.99e-27	N/A	N/A
PHROG	UHGV-2000236_32	phrog_422	300.3	0	major head protein	head and packaging
UniRef90	UHGV-2000236_32	UniRef90_A0A413RCT9	389.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-2000236_32	552396.HMPREF0863_01635	368.0	0	N/A	N/A
structural_annotation	UHGV-2000236_32	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_33	phrog_1378	56.2	5.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-2000236_33	1304866.K413DRAFT_0784	52.4	0.0000000536	N/A	N/A
PHROG	UHGV-2000236_34	phrog_541	74.6	1.2e-21	head-tail adaptor	connector
eggNOG-mapper	UHGV-2000236_34	1304866.K413DRAFT_0783	117.0	3.6e-32	N/A	N/A
PHROG	UHGV-2000236_35	phrog_8710	104.7	5.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-2000236_35	33035.JPJF01000093_gene2249	96.7	1.67e-24	N/A	N/A
structural_annotation	UHGV-2000236_35	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_36	phrog_556	82.4	4.6e-24	minor head protein	head and packaging
eggNOG-mapper	UHGV-2000236_36	742740.HMPREF9474_03509	129.0	7.01e-37	N/A	N/A
PHROG	UHGV-2000236_37	phrog_2595	83.6	2.1e-24	head-tail connector protein	connector
UniRef90	UHGV-2000236_37	UniRef90_UPI0003F673FD	94.7	2.08e-22	minor capsid protein	N/A
eggNOG-mapper	UHGV-2000236_37	33035.JPJF01000093_gene2247	96.7	6.31e-24	N/A	N/A
Pfam	UHGV-2000236_37	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-2000236_37	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_38	phrog_820	110.3	1.1e-32	major tail protein	tail
eggNOG-mapper	UHGV-2000236_38	1507.HMPREF0262_01184	164.0	0	domain, Protein	N/A
COG	UHGV-2000236_38	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2000236_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_39	phrog_8300	81.7	6.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-2000236_39	1122918.KB907248_gene4491	82.4	5.66e-19	N/A	N/A
structural_annotation	UHGV-2000236_39	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_40	phrog_8355	102.4	1.3e-30	N/A	unknown function
UniRef90	UHGV-2000236_40	UniRef90_M9Q2I4	112.0	1.71e-29	Putative phage protein	N/A
eggNOG-mapper	UHGV-2000236_40	394503.Ccel_3036	108.0	1.48e-28	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2000236_40	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2000236_40	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_41	phrog_1535	341.7	0	tail length tape measure protein	tail
UniRef90	UHGV-2000236_41	UniRef90_A0A1C5RGR7	477.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2000236_41	33035.JPJF01000093_gene2243	511.0	0	phage tail tape measure protein	N/A
COG	UHGV-2000236_41	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2000236_41	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_42	phrog_1194	92.8	2.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-2000236_42	1415775.U729_2615	67.4	0.000000000000621	N/A	N/A
Pfam	UHGV-2000236_42	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-2000236_42	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_43	phrog_23052	115.0	2.59997e-41	N/A	unknown function
eggNOG-mapper	UHGV-2000236_43	946235.CAER01000065_gene2433	135.0	2.13e-30	N/A	N/A
structural_annotation	UHGV-2000236_43	PF14879,PF09931,NF033848,NF033147,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-2000236_44	phrog_19291	98.7	3.5e-37	N/A	unknown function
eggNOG-mapper	UHGV-2000236_44	1232449.BAHV02000021_gene1072	223.0	0	N/A	N/A
structural_annotation	UHGV-2000236_44	PF02191,COG3823	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2000236_45	411473.RUMCAL_00420	393.0	0	nuclear chromosome segregation	N/A
COG	UHGV-2000236_45	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A