UHGV-2001302 (vOTU-059245)

Viral Genome: UHGV-2001302

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2001302
vOTU ID	vOTU-059245
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029071\|Ga0169228_10109
Associated BioSample	SAMEA2579962
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.71
Jumbo phage	No

Genome content
Genome length (bp)	37,044
GC content	43.09%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	90%
Average CDS length (bps)	511.99
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-2001302_1	PF06141	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2001302_2	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2001302_3	596315.HMPREF0634_0222	48.5	0.0000071	head-tail adaptor	N/A
COG	UHGV-2001302_3	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2001302_3	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_4	phrog_5223	70.6	1.6e-20	neck protein	connector
UniRef90	UHGV-2001302_4	UniRef90_A0A174XSK5	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-2001302_4	411465.PEPMIC_00737	87.0	2.41e-21	N/A	N/A
structural_annotation	UHGV-2001302_4	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_5	phrog_10	173.8	0	major head protein	head and packaging
UniRef90	UHGV-2001302_5	UniRef90_A0A174XIH6	759.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-2001302_5	1280689.AUJC01000011_gene1521	451.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2001302_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2001302_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2001302_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2001302_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2001302_6	K01358	131.9	7e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2001302_6	phrog_94	216.9	0	head maturation protease	head and packaging
UniRef90	UHGV-2001302_6	UniRef90_A0A174XQS2	458.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2001302_6	1280689.AUJC01000011_gene1520	215.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2001302_6	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2001302_6	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2001302_6	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_7	phrog_12	192.7	0	portal protein	head and packaging
UniRef90	UHGV-2001302_7	UniRef90_A0A174XIL2	828.0	0	Prophage lambdaBa04, portal protein	N/A
eggNOG-mapper	UHGV-2001302_7	1235793.C809_01918	513.0	0	Phage portal protein	N/A
Pfam	UHGV-2001302_7	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2001302_7	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2001302_7	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_8	phrog_9	400.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-2001302_8	UniRef90_A0A174XWB0	1155.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-2001302_8	1235793.C809_01917	892.0	0	Phage Terminase	N/A
Pfam	UHGV-2001302_8	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2001302_8	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2001302_8	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2001302_8	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_9	phrog_1066	88.6	5e-26	N/A	unknown function
eggNOG-mapper	UHGV-2001302_9	1235793.C809_01916	169.0	0	N/A	N/A
structural_annotation	UHGV-2001302_9	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_10	phrog_119	54.0	0.0000000000000024	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2001302_10	UniRef90_A0A174XSZ8	253.0	0	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-2001302_10	318464.IO99_13775	128.0	4.36e-37	HNH nucleases	N/A
COG	UHGV-2001302_10	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-2001302_12	K04763	115.6	5.7e-34	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-2001302_12	phrog_216	174.0	0	integrase	integration and excision
UniRef90	UHGV-2001302_12	UniRef90_A0A174XIE7	363.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-2001302_12	1235793.C809_02656	230.0	0	PFAM Phage integrase family	N/A
Pfam	UHGV-2001302_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2001302_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2001302_12	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_13	phrog_36	41.4	0.000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-2001302_13	UniRef90_A0A174XW92	282.0	0	Phage transcriptional regulator, RinA family	N/A
eggNOG-mapper	UHGV-2001302_13	1122919.KB905569_gene2945	55.8	0.0000000645	Transcriptional regulator, RinA family	N/A
NCBIFam	UHGV-2001302_13	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-2001302_13	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_14	phrog_6568	82.0	4.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-2001302_14	742740.HMPREF9474_02283	53.5	0.00000000853	N/A	N/A
PHROG	UHGV-2001302_15	phrog_25231	45.3	0.0000000000013	N/A	unknown function
structural_annotation	UHGV-2001302_15	PF04936	N/A	N/A	N/A	N/A
KOfam	UHGV-2001302_16	K03733	203.1	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-2001302_16	phrog_1	149.9	2.24208e-44	integrase	integration and excision
UniRef90	UHGV-2001302_16	UniRef90_A0A174XQN6	680.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-2001302_16	762984.HMPREF9445_01343	240.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2001302_16	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-2001302_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2001302_16	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2001302_16	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-2001302_17	UniRef90_UPI00164D7607	70.1	0.0000000000000932	N/A	N/A
UniRef90	UHGV-2001302_18	UniRef90_A0A413WS40	102.0	8.26e-28	Ribbon-helix-helix protein, CopG family	N/A
structural_annotation	UHGV-2001302_18	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_21	phrog_2600	136.7	2.1e-40	N/A	unknown function
eggNOG-mapper	UHGV-2001302_21	1178540.BA70_18565	163.0	0	N/A	N/A
AcrCatalog	UHGV-2001302_23	cluster_222026	107.0	8.38e-35	NA	N/A
KOfam	UHGV-2001302_25	K01356	49.7	0.000000000000082	lexA; repressor LexA [EC:3.4.21.88]	N/A
UniRef90	UHGV-2001302_25	UniRef90_A0A174X928	166.0	0	LexA repressor LexA	N/A
eggNOG-mapper	UHGV-2001302_25	1304866.K413DRAFT_1203	92.0	1.15e-23	LexA DNA binding domain	N/A
Pfam	UHGV-2001302_25	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-2001302_25	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2001302_25	PF01726,MF_00732,TIGR02944,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_27	phrog_8489	232.1	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2001302_27	UniRef90_A0A174X4J3	530.0	0	Phage replication initiation protein	N/A
eggNOG-mapper	UHGV-2001302_27	575609.HMPREF0629_01204	184.0	0	DnaD domain protein	N/A
COG	UHGV-2001302_27	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2001302_27	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_28	phrog_374	60.0	1.4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2001302_28	UniRef90_A0A174XC96	334.0	0	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2001302_28	86416.Clopa_2526	77.4	0.00000000000000448	AP2 domain	N/A
Pfam	UHGV-2001302_28	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-2001302_28	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_29	phrog_398	198.3	0	N/A	unknown function
UniRef90	UHGV-2001302_29	UniRef90_UPI0011780B2F	388.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-2001302_29	33035.JPJF01000122_gene2462	261.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-2001302_29	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-2001302_29	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_30	phrog_155	143.6	9.5008e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2001302_30	UniRef90_A0A174X4H7	420.0	0	Recombination function protein	N/A
eggNOG-mapper	UHGV-2001302_30	1298920.KI911353_gene4870	197.0	0	ERF superfamily	N/A
Pfam	UHGV-2001302_30	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-2001302_30	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_31	phrog_674	171.9	0	N/A	unknown function
UniRef90	UHGV-2001302_31	UniRef90_A0A413WRE4	436.0	0	N/A	N/A
eggNOG-mapper	UHGV-2001302_31	411460.RUMTOR_02065	216.0	0	N/A	N/A
Pfam	UHGV-2001302_31	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-2001302_31	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_33	phrog_30542	127.1	1.1e-37	N/A	unknown function
PHROG	UHGV-2001302_40	phrog_750	93.4	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-2001302_40	742723.HMPREF9477_00931	77.4	4.24e-17	N/A	N/A
structural_annotation	UHGV-2001302_40	PF03444,COG5045	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_41	phrog_643	63.9	2.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2001302_41	UniRef90_UPI0003644948	56.6	0.00000000449	N/A	N/A
eggNOG-mapper	UHGV-2001302_41	562743.JH976434_gene1050	56.6	0.000000000913	N/A	N/A
structural_annotation	UHGV-2001302_41	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-2001302_44	K18830	73.2	1.4e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2001302_44	phrog_4	53.4	0.0000000000000063	transcriptional repressor	transcription regulation
UniRef90	UHGV-2001302_44	UniRef90_A0A174X4D4	271.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2001302_44	1235798.C817_05486	119.0	6.56e-33	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2001302_44	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-2001302_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2001302_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2001302_46	UniRef90_A0A174XDL8	298.0	0	TM2 domain	N/A
Pfam	UHGV-2001302_46	PF05154	N/A	N/A	TM2 domain	TM2
KOfam	UHGV-2001302_47	K06400	374.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2001302_47	phrog_95	359.5	0	integrase	integration and excision
UniRef90	UHGV-2001302_47	UniRef90_UPI000B855A4E	459.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-2001302_47	748224.HMPREF9436_01242	392.0	0	N/A	N/A
Pfam	UHGV-2001302_47	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2001302_47	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2001302_47	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2001302_47	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2001302_47	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-2001302_49	K22300	56.4	7e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2001302_49	phrog_8	48.3	0.00000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-2001302_49	UniRef90_A0A413LAM0	209.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2001302_49	1304866.K413DRAFT_1516	127.0	2.38e-36	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2001302_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2001302_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2001302_49	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_50	phrog_463	64.2	2e-18	anti-repressor	transcription regulation
UniRef90	UHGV-2001302_50	UniRef90_D3AUA1	436.0	0	Bro-N domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-2001302_50	397290.C810_01420	319.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-2001302_50	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-2001302_50	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-2001302_50	PF02498,NF033622,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-2001302_51	K11062	96.0	3.5e-28	entD; probable enterotoxin D	N/A
PHROG	UHGV-2001302_51	phrog_3088	173.2	0	amidase	lysis
UniRef90	UHGV-2001302_51	UniRef90_A0A174XN03	506.0	0	Putative N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2001302_51	1151292.QEW_0991	205.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-2001302_51	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-2001302_51	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-2001302_51	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2001302_51	PF01510,PF19127,MF_04111,NF008758,TIGR04035,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_52	phrog_1129	68.3	8e-20	holin	lysis
UniRef90	UHGV-2001302_52	UniRef90_A0A2N0KEV2	141.0	5.5001e-42	Enolase	N/A
eggNOG-mapper	UHGV-2001302_52	742740.HMPREF9474_03522	141.0	4.52619e-43	N/A	N/A
Pfam	UHGV-2001302_52	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2001302_52	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_53	phrog_1863	75.5	1.6e-22	N/A	unknown function
UniRef90	UHGV-2001302_53	UniRef90_UPI001F223E8B	119.0	1.72e-33	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-2001302_53	1226322.HMPREF1545_04027	76.6	1.62e-17	N/A	N/A
structural_annotation	UHGV-2001302_54	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2001302_55	742740.HMPREF9474_04291	154.0	0	N/A	N/A
KOfam	UHGV-2001302_57	K24213	87.8	1.2e-25	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-2001302_57	phrog_5073	100.0	2.8e-29	tail fiber protein	tail
UniRef90	UHGV-2001302_57	UniRef90_UPI0012D87B5B	104.0	8.77e-24	collagen-like protein	N/A
Pfam	UHGV-2001302_57	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-2001302_58	K07296	62.7	3.9e-18	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-2001302_58	phrog_6320	76.0	4.1e-22	tail fiber protein	tail
UniRef90	UHGV-2001302_58	UniRef90_A0A174XQW7	469.0	0	Collagen triple helix repeat-containing protein	N/A
Pfam	UHGV-2001302_58	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-2001302_58	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-2001302_59	phrog_12764	50.3	0.000000000000032	N/A	unknown function
structural_annotation	UHGV-2001302_59	PF01176,MF_00085,TIGR00523,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_60	phrog_26795	236.1	0	N/A	unknown function
eggNOG-mapper	UHGV-2001302_60	742740.HMPREF9474_04294	373.0	0	N/A	N/A
structural_annotation	UHGV-2001302_60	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_61	phrog_37549	104.3	1.9e-31	virion structural protein	head and packaging
UniRef90	UHGV-2001302_61	UniRef90_UPI00189CF998	1062.0	0	DNRLRE domain-containing protein	N/A
eggNOG-mapper	UHGV-2001302_61	796940.HMPREF9628_00134	63.2	0.000000173	N/A	N/A
NCBIFam	UHGV-2001302_61	NF033679.1	N/A	N/A	DNRLRE domain-containing protein	N/A
structural_annotation	UHGV-2001302_61	PF06995,PF02010,MF_04116,TIGR02126,NF041431,COG3499,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_62	phrog_33680	136.4	1.8e-40	N/A	unknown function
UniRef90	UHGV-2001302_62	UniRef90_A0A174XMM8	1062.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-2001302_62	742740.HMPREF9474_04296	471.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-2001302_62	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2001302_62	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2001302_65	phrog_88	103.9	1.4e-30	major tail protein	tail
UniRef90	UHGV-2001302_65	UniRef90_A0A174XIJ5	392.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-2001302_65	742740.HMPREF9474_04299	234.0	0	N/A	N/A
NCBIFam	UHGV-2001302_65	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2001302_65	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A