UHGV-2023890 (vOTU-015510)

Viral Genome: UHGV-2023890

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2023890
vOTU ID	vOTU-015510
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029220\|Ga0168707_100344\|provirus_3_37787
Associated BioSample	SAMEA2737688
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.43 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9731
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.49
Jumbo phage	No

Genome content
Genome length (bp)	37,785
GC content	57.90%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	92%
Average CDS length (bps)	679.88
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2023890_1	phrog_18190	108.1	2.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-2023890_1	411471.SUBVAR_06932	313.0	0	N/A	N/A
structural_annotation	UHGV-2023890_1	PF05954,PF00629,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_2	phrog_1194	58.2	1.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-2023890_2	411471.SUBVAR_06933	201.0	0	N/A	N/A
structural_annotation	UHGV-2023890_2	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_3	phrog_1535	183.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2023890_3	665956.HMPREF1032_03628	186.0	1.4013e-45	domain protein	N/A
COG	UHGV-2023890_3	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_4	phrog_706	109.8	2.4e-32	N/A	unknown function
UniRef90	UHGV-2023890_4	UniRef90_UPI0013141117	229.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2023890_4	665956.HMPREF1032_03058	208.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2023890_4	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2023890_4	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_5	phrog_11299	98.5	5.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-2023890_5	665956.HMPREF1032_03059	116.0	2.1e-31	N/A	N/A
structural_annotation	UHGV-2023890_5	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_6	phrog_3099	149.4	1.68156e-44	N/A	unknown function
eggNOG-mapper	UHGV-2023890_6	411471.SUBVAR_06936	261.0	0	N/A	N/A
structural_annotation	UHGV-2023890_6	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_7	phrog_3266	77.3	1.8e-22	tail completion	connector
eggNOG-mapper	UHGV-2023890_7	663278.Ethha_0492	59.7	0.00000000209	N/A	N/A
structural_annotation	UHGV-2023890_7	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_8	phrog_556	83.4	2.4e-24	minor head protein	head and packaging
UniRef90	UHGV-2023890_8	UniRef90_UPI001958E7C1	101.0	6.02e-25	minor capsid protein	N/A
eggNOG-mapper	UHGV-2023890_8	642492.Clole_0824	82.8	1.34e-18	Minor capsid protein	N/A
Pfam	UHGV-2023890_8	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2023890_8	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2023890_9	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_11	phrog_247	199.7	0	major head protein	head and packaging
UniRef90	UHGV-2023890_11	UniRef90_UPI0009303115	144.0	1.23e-36	major capsid protein	N/A
eggNOG-mapper	UHGV-2023890_11	1029823.AFIE01000059_gene1095	92.0	3.1e-18	N/A	N/A
structural_annotation	UHGV-2023890_11	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_12	phrog_194	44.8	0.0000000000021	head scaffolding protein	head and packaging
structural_annotation	UHGV-2023890_12	PF06810,MF_02110	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2023890_13	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_14	phrog_2443	216.3	0	amidoligase enzyme	other
UniRef90	UHGV-2023890_14	UniRef90_A0A174F0K6	302.0	0	Alpha-L-fucosidase	N/A
eggNOG-mapper	UHGV-2023890_14	665950.HMPREF1025_02711	302.0	0	Putative amidoligase enzyme	N/A
AcrCatalog	UHGV-2023890_14	cluster_58247	73.6	1.29e-16	NA	N/A
Pfam	UHGV-2023890_14	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-2023890_14	PF12224,MF_01609,NF010045,COG2170	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_16	phrog_3939	46.1	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-2023890_16	445972.ANACOL_00207	81.3	1.4e-19	N/A	N/A
KOfam	UHGV-2023890_17	K00682	56.7	3.5e-16	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	N/A
PHROG	UHGV-2023890_17	phrog_2520	97.0	1.3e-28	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2023890_17	UniRef90_A0A367GJL1	162.0	0	Gamma-glutamylcyclotransferase	N/A
eggNOG-mapper	UHGV-2023890_17	397290.C810_01249	149.0	8.07148e-43	Gamma-glutamyl cyclotransferase, AIG2-like	N/A
Pfam	UHGV-2023890_17	PF06094	N/A	N/A	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
COG	UHGV-2023890_17	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-2023890_17	PF06094,COG2105	N/A	N/A	N/A	N/A
KOfam	UHGV-2023890_18	K05521	266.4	0	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	N/A
PHROG	UHGV-2023890_18	phrog_6572	136.2	1.99965e-42	ADP-ribosylglycohydrolase	other
UniRef90	UHGV-2023890_18	UniRef90_A0A367GJZ8	430.0	0	ADP-ribosyl-[dinitrogen reductase] hydrolase	N/A
eggNOG-mapper	UHGV-2023890_18	1007103.AFHW01000094_gene3200	194.0	0	ADP-ribosylglycohydrolase	N/A
Pfam	UHGV-2023890_18	PF03747	N/A	N/A	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
COG	UHGV-2023890_18	COG1397	N/A	N/A	ADP-ribosylglycohydrolase	N/A
structural_annotation	UHGV-2023890_18	PF03747,NF041672,COG1397	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_19	phrog_581	274.6	0	minor head protein	head and packaging
UniRef90	UHGV-2023890_19	UniRef90_UPI0019688325	256.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-2023890_19	645991.Sgly_0338	238.0	0	N/A	N/A
Pfam	UHGV-2023890_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2023890_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2023890_19	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_20	phrog_533	270.8	0	portal protein	head and packaging
UniRef90	UHGV-2023890_20	UniRef90_A0A3E2XD02	615.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2023890_20	642492.Clole_0815	252.0	0	N/A	N/A
Pfam	UHGV-2023890_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2023890_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2023890_21	K06909	305.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2023890_21	phrog_3717	121.6	5.6e-36	terminase large subunit	head and packaging
UniRef90	UHGV-2023890_21	UniRef90_A0A367GIK4	867.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2023890_21	665956.HMPREF1032_02957	405.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2023890_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2023890_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-2023890_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2023890_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-2023890_22	K00571	124.0	1.6e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-2023890_22	phrog_498	449.3	0	DNA methyltransferase	other
UniRef90	UHGV-2023890_22	UniRef90_A0A367GIB5	802.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-2023890_22	1423758.BN55_01455	426.0	0	DNA methylase	N/A
PADLOC	UHGV-2023890_22	MTase_II_00015	272.4	0	Type II methyltransferase	RM
Pfam	UHGV-2023890_22	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-2023890_22	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2023890_22	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-2023890_22	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
Pfam	UHGV-2023890_25	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
PHROG	UHGV-2023890_27	phrog_14952	40.4	0.00000000005	N/A	unknown function
eggNOG-mapper	UHGV-2023890_27	645991.Sgly_0338	61.2	0.0000000422	N/A	N/A
COG	UHGV-2023890_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2023890_27	PF03496,MF_04142,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_28	phrog_8680	197.9	0	N/A	unknown function
UniRef90	UHGV-2023890_28	UniRef90_A0A6L5T7C3	161.0	0	N/A	N/A
eggNOG-mapper	UHGV-2023890_28	1229517.AMFD01000023_gene1324	159.0	0	N/A	N/A
Pfam	UHGV-2023890_28	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-2023890_28	PF14386,NF041059	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2023890_29	PF07374,TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-2023890_31	K14440	122.7	4.6e-37	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-2023890_31	phrog_62	377.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023890_31	UniRef90_A0A367GJS6	823.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-2023890_31	1385512.N784_13490	497.0	0	SNF2 family	N/A
PADLOC	UHGV-2023890_31	DpdE_00010	106.4	3.3e-31	DpdE	DPD
Pfam	UHGV-2023890_31	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
COG	UHGV-2023890_31	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-2023890_31	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_32	phrog_93	51.5	0.000000000000014	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023890_32	UniRef90_UPI0018F1F23F	153.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2023890_32	411473.RUMCAL_00894	86.3	1.51e-20	VRR_NUC	N/A
structural_annotation	UHGV-2023890_32	PF01870,MF_00130,NF002584,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_33	phrog_256	934.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023890_33	UniRef90_A0A367GI49	1406.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-2023890_33	1395587.P364_0122125	719.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-2023890_33	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-2023890_33	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-2023890_33	PF05272,NF011296,NF040562,COG5545	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2023890_36	760568.Desku_0919	90.9	6.16e-20	N/A	N/A
structural_annotation	UHGV-2023890_36	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-2023890_38	K02334	771.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-2023890_38	phrog_17	360.2	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023890_38	UniRef90_A0A367GJN4	1199.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-2023890_38	693746.OBV_43170	671.0	0	DNA polymerase	N/A
Pfam	UHGV-2023890_38	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-2023890_38	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-2023890_38	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_39	phrog_112	158.7	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023890_39	UniRef90_A0A367GK15	399.0	0	N/A	N/A
eggNOG-mapper	UHGV-2023890_39	1451189.CFAL_09815	147.0	1.26005e-41	N/A	N/A
Pfam	UHGV-2023890_39	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-2023890_39	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-2023890_42	K07465	42.9	0.0000000000054	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-2023890_42	phrog_69	313.8	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023890_42	UniRef90_A0A367GI90	775.0	0	N/A	N/A
eggNOG-mapper	UHGV-2023890_42	1408437.JNJN01000081_gene1518	320.0	0	N/A	N/A
Pfam	UHGV-2023890_42	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-2023890_42	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-2023890_42	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2023890_43	PF01157,MF_01354,NF002745,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-2023890_44	phrog_18562	42.9	0.000000000011	N/A	unknown function
UniRef90	UHGV-2023890_48	UniRef90_A0A367GID4	120.0	1.18e-34	HTH_17 domain-containing protein	N/A
Pfam	UHGV-2023890_48	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-2023890_48	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-2023890_49	phrog_8	40.1	0.000000000081	transcriptional regulator	transcription regulation
UniRef90	UHGV-2023890_49	UniRef90_A0A124JZL2	55.8	0.000000163	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-2023890_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2023890_49	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2023890_51	K14059	195.0	0	int; integrase	N/A
PHROG	UHGV-2023890_51	phrog_1	196.1	0	integrase	integration and excision
UniRef90	UHGV-2023890_51	UniRef90_A0A367GI93	730.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2023890_51	1507.HMPREF0262_00307	189.0	0	Phage integrase family	N/A
Pfam	UHGV-2023890_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2023890_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2023890_51	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A