UHGV-2034822 (vOTU-067229)

Viral Genome: UHGV-2034822

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2034822
vOTU ID	vOTU-067229
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029335\|Ga0243762_100863\|provirus_3_32686
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.4 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.39
Jumbo phage	No

Genome content
Genome length (bp)	32,684
GC content	45.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	94%
Average CDS length (bps)	665.87
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 92.4)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2034822_1	K07729	51.3	0.000000000000024	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-2034822_1	phrog_8	45.9	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-2034822_1	UniRef90_A0A350VIS0	92.4	1.52e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-2034822_1	1123263.AUKY01000072_gene2113	52.8	0.0000000127	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-2034822_1	retron_type_VI_hth_cluster2_1	41.9	0.000000000031	N/A	Retron
Pfam	UHGV-2034822_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2034822_1	PF01381,NF041677,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2034822_2	PF17648,NF007603,COG2315	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2034822_6	PF13058	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2034822_8	411468.CLOSCI_00572	84.7	2.62e-19	N/A	N/A
PHROG	UHGV-2034822_10	phrog_20014	56.9	1.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-2034822_10	1235798.C817_02590	74.7	1.94e-16	N/A	N/A
KOfam	UHGV-2034822_11	K00558	116.0	2.7e-34	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2034822_11	phrog_116	107.4	3.8e-38	DNA methyltransferase	other
UniRef90	UHGV-2034822_11	UniRef90_UPI00189F9B8A	600.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2034822_11	397290.C810_05213	239.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-2034822_11	MTase_II_00174	137.5	1.7e-40	Type II methyltransferase	RM
Pfam	UHGV-2034822_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-2034822_11	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-2034822_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2034822_11	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-2034822_13	K00558	52.8	0.0000000000000038	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2034822_13	phrog_16427	83.1	2.7e-24	DNA methyltransferase	other
UniRef90	UHGV-2034822_13	UniRef90_UPI00189D9989	467.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2034822_13	411468.CLOSCI_00565	110.0	1.29e-27	N/A	N/A
PADLOC	UHGV-2034822_13	oMTase_00023	67.1	1.4e-19	orphan methyltransferase	RM
Pfam	UHGV-2034822_13	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
PHROG	UHGV-2034822_15	phrog_24386	124.3	5.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-2034822_15	411468.CLOSCI_00562	183.0	0	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-2034822_15	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
structural_annotation	UHGV-2034822_15	TIGR01689,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_18	phrog_3584	240.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2034822_18	411468.CLOSCI_00558	427.0	0	N/A	N/A
structural_annotation	UHGV-2034822_18	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_19	phrog_824	121.3	4.3e-36	N/A	unknown function
UniRef90	UHGV-2034822_19	UniRef90_A0A374JR68	337.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2034822_19	411468.CLOSCI_00556	243.0	0	VRR_NUC	N/A
Pfam	UHGV-2034822_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
eggNOG-mapper	UHGV-2034822_21	411468.CLOSCI_00554	122.0	1.79e-34	N/A	N/A
KOfam	UHGV-2034822_22	K07451	41.6	0.000000000021	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-2034822_22	phrog_119	63.3	3.7e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2034822_22	UniRef90_A0A374JQS6	226.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2034822_22	411468.CLOSCI_00553	133.0	5.57e-39	HNH endonuclease	N/A
COG	UHGV-2034822_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2034822_23	phrog_1066	51.6	0.000000000000018	N/A	unknown function
eggNOG-mapper	UHGV-2034822_23	411902.CLOBOL_03883	73.6	0.0000000000000167	N/A	N/A
PHROG	UHGV-2034822_24	phrog_9	341.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-2034822_24	UniRef90_A0A374JP15	1102.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2034822_24	411468.CLOSCI_00551	900.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-2034822_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2034822_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2034822_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2034822_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_25	phrog_12	172.2	0	portal protein	head and packaging
UniRef90	UHGV-2034822_25	UniRef90_A0A374JP76	776.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2034822_25	411468.CLOSCI_00550	617.0	0	Phage portal protein	N/A
Pfam	UHGV-2034822_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2034822_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2034822_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2034822_26	K01358	142.1	4.90034e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2034822_26	phrog_94	212.0	0	head maturation protease	head and packaging
UniRef90	UHGV-2034822_26	UniRef90_A0A374JQH6	499.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2034822_26	411468.CLOSCI_00549	339.0	0	COG COG0740 Protease subunit of ATP-dependent Clp proteases	N/A
Pfam	UHGV-2034822_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2034822_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2034822_26	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_27	phrog_10	122.1	5.2e-36	major head protein	head and packaging
UniRef90	UHGV-2034822_27	UniRef90_A0A374JNW0	668.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2034822_27	411468.CLOSCI_00548	575.0	0	Phage capsid family	N/A
Pfam	UHGV-2034822_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2034822_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-2034822_27	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_28	phrog_5223	46.2	0.00000000000059	neck protein	connector
UniRef90	UHGV-2034822_28	UniRef90_A0A174XIL0	121.0	4.3e-34	N/A	N/A
eggNOG-mapper	UHGV-2034822_28	411468.CLOSCI_00547	116.0	9.78e-33	N/A	N/A
PHROG	UHGV-2034822_29	phrog_1951	64.4	1.5e-18	head-tail adaptor	connector
UniRef90	UHGV-2034822_29	UniRef90_UPI00189EBA11	175.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-2034822_29	491915.Aflv_0668	48.9	0.00000606	head-tail adaptor	N/A
NCBIFam	UHGV-2034822_29	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-2034822_29	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2034822_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_30	phrog_5	42.5	0.000000000016	tail completion or Neck1 protein	connector
UniRef90	UHGV-2034822_30	UniRef90_UPI001C00E12E	127.0	4.58e-35	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2034822_30	457421.CBFG_03712	131.0	1.41e-37	N/A	N/A
structural_annotation	UHGV-2034822_30	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2034822_31	411468.CLOSCI_00544	141.0	4.56963e-42	N/A	N/A
structural_annotation	UHGV-2034822_31	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_32	phrog_2175	80.2	2.7e-23	protein with Ig domain	other
eggNOG-mapper	UHGV-2034822_32	411468.CLOSCI_00543	200.0	0	N/A	N/A
structural_annotation	UHGV-2034822_32	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_33	phrog_29863	42.0	0.000000000014	N/A	unknown function
eggNOG-mapper	UHGV-2034822_33	411468.CLOSCI_00542	145.0	7.00649e-44	N/A	N/A
structural_annotation	UHGV-2034822_33	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_34	phrog_1272	320.9	0	tail length tape measure protein	tail
UniRef90	UHGV-2034822_34	UniRef90_A0A174XH68	673.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-2034822_34	411468.CLOSCI_00540	647.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-2034822_34	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-2034822_34	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-2034822_34	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2034822_34	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_35	phrog_33	81.0	2.4e-23	distal tail protein Dit	tail
UniRef90	UHGV-2034822_35	UniRef90_UPI00164BA811	172.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-2034822_35	1567011.A0A0A7RWN1_9VIRU	105.0	1.48e-24	Phage tail protein	N/A
Pfam	UHGV-2034822_35	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-2034822_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_36	phrog_1067	420.1	0	minor head protein	head and packaging
UniRef90	UHGV-2034822_36	UniRef90_UPI00189EFADE	1851.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2034822_36	1160721.RBI_I01574	422.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-2034822_36	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2034822_36	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2034822_36	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2034822_36	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_39	phrog_19280	75.1	6.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-2034822_39	537013.CLOSTMETH_03776	76.3	0.0000000000011	N/A	N/A
Pfam	UHGV-2034822_39	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-2034822_39	PF10651,NF010435	N/A	N/A	N/A	N/A
PHROG	UHGV-2034822_40	phrog_5302	195.3	0	tail protein	tail
eggNOG-mapper	UHGV-2034822_40	411468.CLOSCI_01504	270.0	0	N/A	N/A
structural_annotation	UHGV-2034822_40	COG1262	N/A	N/A	N/A	N/A
KOfam	UHGV-2034822_41	K00986	145.4	4.59626e-43	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2034822_41	phrog_1423	243.0	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2034822_41	UniRef90_A0A416UF24	445.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-2034822_41	411468.CLOSCI_01505	313.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-2034822_41	icity0040	88.5	9.4e-26	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-2034822_41	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-2034822_41	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
Pfam	UHGV-2034822_42	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-2034822_42	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2034822_43	742733.HMPREF9469_01798	62.0	0.0000000000183	N/A	N/A
PHROG	UHGV-2034822_44	phrog_263	80.3	1.4e-23	holin	lysis
UniRef90	UHGV-2034822_44	UniRef90_R6GD40	162.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-2034822_44	764291.STRUR_2085	81.6	4.99e-19	SPP1 phage holin	N/A
Pfam	UHGV-2034822_44	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-2034822_44	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-2034822_44	PF04688,TIGR01592	N/A	N/A	N/A	N/A
KOfam	UHGV-2034822_45	K07273	187.3	0	acm; lysozyme	N/A
PHROG	UHGV-2034822_45	phrog_291	214.3	0	endolysin	lysis
UniRef90	UHGV-2034822_45	UniRef90_A0A374JNX4	646.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2034822_45	521003.COLINT_02363	280.0	0	CW_7 repeat	N/A
Pfam	UHGV-2034822_45	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-2034822_45	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-2034822_45	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-2034822_45	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-2034822_45	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
KOfam	UHGV-2034822_46	K06168	594.7	0	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	N/A
UniRef90	UHGV-2034822_46	UniRef90_A0A174G4D8	921.0	0	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	N/A
eggNOG-mapper	UHGV-2034822_46	140626.JHWB01000016_gene2411	721.0	0	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
Pfam	UHGV-2034822_46	PF00919	N/A	N/A	N/A	UPF0004
Pfam	UHGV-2034822_46	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
Pfam	UHGV-2034822_46	PF01938	N/A	N/A	TRAM domain	TRAM
NCBIFam	UHGV-2034822_46	TIGR01574.1	N/A	N/A	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	N/A
COG	UHGV-2034822_46	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
HAMAP	UHGV-2034822_46	MF_01864	N/A	N/A	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]	N/A
structural_annotation	UHGV-2034822_46	PF00919,PF20903,MF_01864,TIGR01574,COG0621	N/A	N/A	N/A	N/A