UHGV-2040931 (vOTU-008624)

Viral Genome: UHGV-2040931

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-2040931
vOTU ID	vOTU-008624
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300029355\|Ga0243784_100414\|provirus_19621_66570
Associated Biosample	SAMN05971490
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	95.49 (High-quality)
Trimmed?	Yes
CheckV Viral Markers	18
CheckV Host Markers	5
Recoded?	No

Viral Content
geNomad score	0.9607
Viral Hallmark Genes (geNomad)	10
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	35.82
Jumbo Phage?	No

Genome Content
Length (bps)	33,598
GC Content	39.22%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	39
CDS Density	89%
Average CDS Length (bps)	768.46
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2040931_1	phrog_581	49.1	0.00000000000007	minor head protein	head and packaging
UniRef90	UHGV-2040931_1	UniRef90_A0A3D0XVN5	77.4	0.0000000000000122	Capsid protein (Fragment)	N/A
eggNOG-mapper	UHGV-2040931_1	642492.Clole_0816	71.2	0.00000000000272	N/A	N/A
Pfam	UHGV-2040931_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2040931_1	COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-2040931_2	K09384	86.9	8e-26	N/A	N/A
UniRef90	UHGV-2040931_2	UniRef90_A0A412DTL3	1295.0	0	N/A	N/A
eggNOG-mapper	UHGV-2040931_2	386415.NT01CX_2411	1024.0	0	N/A	N/A
Pfam	UHGV-2040931_2	PF09848	N/A	N/A	Schlafen group 3, DNA/RNA helicase domain	SLFN-g3_helicase
COG	UHGV-2040931_2	COG3410	N/A	N/A	N/A	N/A
KOfam	UHGV-2040931_3	K01447	57.0	4.4e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2040931_3	phrog_20388	307.9	0	endolysin	lysis
UniRef90	UHGV-2040931_3	UniRef90_A0A374N1L8	545.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2040931_3	1203606.HMPREF1526_00253	315.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2040931_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-2040931_3	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2040931_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2040931_3	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_4	phrog_774	60.3	4.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-2040931_4	397290.C810_05225	109.0	5.63e-30	N/A	N/A
PHROG	UHGV-2040931_5	phrog_443	51.3	0.000000000000033	holin	lysis
UniRef90	UHGV-2040931_5	UniRef90_UPI000C088FD8	78.6	8.55e-18	holin	N/A
eggNOG-mapper	UHGV-2040931_5	1235800.C819_01425	77.8	4.76e-18	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2040931_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2040931_5	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_6	phrog_4105	77.5	1.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-2040931_6	1291050.JAGE01000001_gene433	69.3	0.000000000000113	N/A	N/A
eggNOG-mapper	UHGV-2040931_7	1122931.AUAE01000019_gene984	72.4	0.000000000163	GDSL-like Lipase/Acylhydrolase family	N/A
Pfam	UHGV-2040931_7	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
PHROG	UHGV-2040931_8	phrog_1067	104.9	2.3e-31	minor head protein	head and packaging
UniRef90	UHGV-2040931_8	UniRef90_A0A348ZBV6	159.0	2.34998e-41	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2040931_8	1567011.A0A0A7RUI9_9VIRU	70.9	0.00000000023	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-2040931_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2040931_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-2040931_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_9	phrog_33	82.4	9.8e-24	distal tail protein Dit	tail
UniRef90	UHGV-2040931_9	UniRef90_A0A1G5CPA2	132.0	9.3e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-2040931_9	1160721.RBI_I01575	94.0	3.5e-20	Phage tail protein	N/A
COG	UHGV-2040931_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2040931_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-2040931_10	K20478	77.6	3.1e-23	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-2040931_10	phrog_1272	233.7	0	tail length tape measure protein	tail
UniRef90	UHGV-2040931_10	UniRef90_A0A412ULX0	1730.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2040931_10	588581.Cpap_1264	201.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-2040931_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-2040931_10	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2040931_10	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2040931_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_12	phrog_88	75.4	7.7e-22	major tail protein	tail
UniRef90	UHGV-2040931_12	UniRef90_A0A1G5CNS8	151.0	1.31021e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-2040931_12	1321782.HMPREF1986_01362	65.1	0.000000000263	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-2040931_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2040931_12	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-2040931_13	UniRef90_UPI000E5564A4	269.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2040931_13	1235792.C808_00089	50.8	0.00000434	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-2040931_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-2040931_13	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2040931_14	272623.L59277	49.7	0.00000332	N/A	N/A
structural_annotation	UHGV-2040931_14	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_15	phrog_19734	68.7	7.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-2040931_15	86416.Clopa_0343	61.2	0.000000000159	N/A	N/A
structural_annotation	UHGV-2040931_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_16	phrog_749	56.0	6.3e-16	N/A	unknown function
UniRef90	UHGV-2040931_16	UniRef90_A0A1G5CMX8	106.0	6.11e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2040931_16	1450694.BTS2_0540	60.1	0.000000000179	N/A	N/A
PHROG	UHGV-2040931_17	phrog_10	128.7	5.5e-38	major head protein	head and packaging
UniRef90	UHGV-2040931_17	UniRef90_A0A412ULW9	727.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2040931_17	1211817.CCAT010000053_gene2132	323.0	0	Phage capsid family	N/A
Pfam	UHGV-2040931_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2040931_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2040931_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2040931_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2040931_18	K01358	135.3	6.50001e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2040931_18	phrog_94	205.5	0	head maturation protease	head and packaging
UniRef90	UHGV-2040931_18	UniRef90_A0A412ULU1	461.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2040931_18	86416.Clopa_0340	177.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2040931_18	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2040931_18	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2040931_18	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_19	phrog_12	96.6	2.1e-28	portal protein	head and packaging
UniRef90	UHGV-2040931_19	UniRef90_A0A412ULV9	759.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2040931_19	1415774.U728_1254	264.0	0	Phage portal protein	N/A
Pfam	UHGV-2040931_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2040931_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2040931_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2040931_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_20	phrog_9	302.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-2040931_20	UniRef90_A0A412UM03	1020.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2040931_20	86416.Clopa_0337	632.0	0	Phage Terminase	N/A
Pfam	UHGV-2040931_20	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2040931_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2040931_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2040931_20	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_21	phrog_5110	82.3	4.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-2040931_21	UniRef90_A0A1M5U1D5	112.0	2.41e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-2040931_21	86416.Clopa_0336	101.0	1.47e-26	N/A	N/A
Pfam	UHGV-2040931_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-2040931_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_22	phrog_119	69.9	3.7e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2040931_22	UniRef90_A0A412ULY9	226.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2040931_22	1158607.UAU_01026	99.8	8.3e-26	HNH endonuclease	N/A
Pfam	UHGV-2040931_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2040931_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2040931_23	phrog_31049	40.6	0.00000000000032	N/A	unknown function
eggNOG-mapper	UHGV-2040931_23	431943.CKL_4074	52.0	0.00000166	N/A	N/A
structural_annotation	UHGV-2040931_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_24	phrog_3584	147.4	9.94922e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2040931_24	1235800.C819_00515	68.9	0.0000000000476	N/A	N/A
structural_annotation	UHGV-2040931_24	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-2040931_26	K03497	156.7	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-2040931_26	phrog_6218	245.5	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2040931_26	UniRef90_A0A3D3D7T1	785.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-2040931_26	1160721.RBI_I01596	234.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-2040931_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-2040931_26	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-2040931_26	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2040931_26	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2040931_28	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_29	phrog_6058	42.4	0.0000000000078	N/A	unknown function
structural_annotation	UHGV-2040931_29	NF033787	N/A	N/A	N/A	N/A
UniRef90	UHGV-2040931_30	UniRef90_UPI0015F48AC0	109.0	2.76e-30	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-2040931_31	PF15597	N/A	N/A	N/A	N/A
KOfam	UHGV-2040931_32	K19170	48.0	0.000000000000055	dndC; DNA sulfur modification protein DndC	N/A
PHROG	UHGV-2040931_32	phrog_424	56.5	4.7e-16	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2040931_32	UniRef90_UPI001C034617	342.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-2040931_32	1408437.JNJN01000032_gene2312	207.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-2040931_32	BrxP_00001	41.0	0.000000000021	BrxP	BREX
Pfam	UHGV-2040931_32	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-2040931_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-2040931_33	phrog_585	115.0	5e-34	N/A	unknown function
UniRef90	UHGV-2040931_33	UniRef90_UPI00051C896C	143.0	1.32997e-41	N/A	N/A
eggNOG-mapper	UHGV-2040931_33	1033744.CAEL01000029_gene1306	128.0	4.7e-36	N/A	N/A
Pfam	UHGV-2040931_33	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-2040931_33	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-2040931_35	UniRef90_UPI000E51362F	132.0	4.37e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2040931_35	411461.DORFOR_00030	50.8	0.000000123	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2040931_35	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-2040931_35	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_36	phrog_8	45.1	0.0000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-2040931_36	UniRef90_UPI0015F3DE1D	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2040931_36	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-2040931_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2040931_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2040931_36	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2040931_37	phrog_1914	145.8	2.49431e-43	N/A	unknown function
UniRef90	UHGV-2040931_37	UniRef90_UPI000E543E50	359.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2040931_37	1160721.RBI_I01604	171.0	0	N/A	N/A
Pfam	UHGV-2040931_37	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2040931_37	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2040931_37	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-2040931_38	UniRef90_UPI000E52DA24	736.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-2040931_38	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-2040931_38	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-2040931_39	K14059	94.7	1.5e-27	int; integrase	N/A
PHROG	UHGV-2040931_39	phrog_1	113.8	2.2e-33	integrase	integration and excision
UniRef90	UHGV-2040931_39	UniRef90_A0A1G5CL52	795.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-2040931_39	693746.OBV_41260	182.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2040931_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2040931_39	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2040931_39	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A