UHGV-2048465 (vOTU-062590)

Viral Genome: UHGV-2048465

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2048465
vOTU ID	vOTU-062590
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029340\|Ga0243727_1000021\|provirus_45881_74740
Associated BioSample	SAMN05971428
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.23 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9711
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.1
Jumbo phage	No

Genome content
Genome length (bp)	28,860
GC content	39.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	530.47
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 91.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2048465_1	K00986	49.1	0.000000000000072	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2048465_1	phrog_2825	50.5	0.000000000000028	polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2048465_1	UniRef90_A0A162J5U9	105.0	1.17e-26	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-2048465_1	980584.AFPB01000170_gene1437	92.4	8.62e-21	RNA-directed DNA polymerase	N/A
PADLOC	UHGV-2048465_1	retron_III-A1	133.7	2.7e-39	N/A	Retron
COG	UHGV-2048465_1	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
KOfam	UHGV-2048465_2	K14059	178.1	0	int; integrase	N/A
PHROG	UHGV-2048465_2	phrog_1	165.1	0	integrase	integration and excision
UniRef90	UHGV-2048465_2	UniRef90_UPI000E4C7350	379.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2048465_2	1095750.HMPREF9970_1688	233.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-2048465_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2048465_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2048465_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-2048465_3	UniRef90_A0A374DTF3	103.0	3.09e-25	N/A	N/A
KOfam	UHGV-2048465_4	K22300	53.7	0.0000000000000048	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2048465_4	phrog_2328	44.3	0.0000000000022	transcriptional repressor	transcription regulation
UniRef90	UHGV-2048465_4	UniRef90_A0A373KVP1	111.0	2.51e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2048465_4	525254.HMPREF0072_0267	85.5	7.63e-20	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-2048465_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2048465_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2048465_4	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2048465_6	PF13443,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2048465_7	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_12	phrog_674	159.8	0	N/A	unknown function
UniRef90	UHGV-2048465_12	UniRef90_A0A374N9T8	372.0	0	N/A	N/A
eggNOG-mapper	UHGV-2048465_12	1408437.JNJN01000039_gene373	189.0	0	N/A	N/A
Pfam	UHGV-2048465_12	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-2048465_12	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-2048465_13	K07455	182.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-2048465_13	phrog_148	204.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2048465_13	UniRef90_A0A374N9W0	413.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-2048465_13	1095750.HMPREF9970_1675	278.0	0	RecT family	N/A
Pfam	UHGV-2048465_13	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-2048465_13	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-2048465_13	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-2048465_13	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-2048465_14	K06167	53.2	0.0000000000000044	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-2048465_14	phrog_392	126.9	1.8e-37	metal-dependent hydrolase	other
UniRef90	UHGV-2048465_14	UniRef90_A0A373XYI8	346.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-2048465_14	1408437.JNJN01000039_gene371	69.7	0.000000000000445	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-2048465_14	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-2048465_14	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-2048465_14	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_15	phrog_398	208.3	0	N/A	unknown function
UniRef90	UHGV-2048465_15	UniRef90_UPI000C7B20DA	191.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-2048465_15	293826.Amet_2584	177.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-2048465_15	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-2048465_15	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_16	phrog_2562	135.2	6.2e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2048465_16	UniRef90_A0A374NA85	324.0	0	N/A	N/A
eggNOG-mapper	UHGV-2048465_16	1235790.C805_00030	145.0	3.38e-39	N/A	N/A
Pfam	UHGV-2048465_16	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-2048465_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2048465_16	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-2048465_17	K02315	135.3	5.5e-40	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-2048465_17	phrog_50	134.6	8e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2048465_17	UniRef90_A0A374UPV4	479.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-2048465_17	445972.ANACOL_01829	202.0	0	N/A	N/A
Pfam	UHGV-2048465_17	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-2048465_17	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-2048465_17	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-2048465_18	K01160	49.6	0.00000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2048465_18	phrog_140	98.2	8.3e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2048465_18	UniRef90_A0A374US90	214.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2048465_18	411462.DORLON_00806	188.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2048465_18	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2048465_18	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2048465_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2048465_19	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2048465_20	PF02796,NF008548	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_21	phrog_323	71.6	1.3e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2048465_21	UniRef90_UPI001C01CFF8	317.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-2048465_21	756499.Desde_1065	354.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-2048465_21	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-2048465_21	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_22	phrog_25754	65.6	2.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-2048465_22	97139.C824_00736	69.3	0.0000000000000801	N/A	N/A
structural_annotation	UHGV-2048465_22	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_23	phrog_599	45.0	0.0000000000022	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-2048465_23	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-2048465_23	PF14354,TIGR03655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2048465_28	1035196.HMPREF9998_01748	49.3	0.000000667	methyltransferase	N/A
COG	UHGV-2048465_28	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
PHROG	UHGV-2048465_29	phrog_2245	91.6	8.2e-27	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-2048465_29	UniRef90_A0A844JSD9	58.5	0.00000000429	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-2048465_29	926561.KB900623_gene754	64.7	0.00000000000259	N/A	N/A
structural_annotation	UHGV-2048465_29	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_32	phrog_8	50.2	0.000000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-2048465_32	UniRef90_A0A412LC59	53.9	0.0000000385	XRE family transcriptional regulator	N/A
Pfam	UHGV-2048465_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2048465_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2048465_32	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_33	phrog_119	52.2	0.0000000000000088	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2048465_33	UniRef90_A0A374N9T6	165.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2048465_33	1235793.C809_01915	123.0	8.72e-35	HNH endonuclease	N/A
Pfam	UHGV-2048465_33	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2048465_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2048465_34	phrog_1066	115.6	2.4e-34	N/A	unknown function
UniRef90	UHGV-2048465_34	UniRef90_A0A0D0SQQ8	84.3	1.41e-18	N/A	N/A
eggNOG-mapper	UHGV-2048465_34	1203606.HMPREF1526_00982	104.0	1.89e-27	N/A	N/A
PHROG	UHGV-2048465_35	phrog_9	394.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-2048465_35	UniRef90_A0A374NB45	978.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2048465_35	1235793.C809_01917	721.0	0	Phage Terminase	N/A
Pfam	UHGV-2048465_35	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2048465_35	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2048465_35	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2048465_35	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_36	phrog_12	178.3	0	portal protein	head and packaging
UniRef90	UHGV-2048465_36	UniRef90_A0A374NAE1	770.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2048465_36	626523.GCWU000342_01027	407.0	0	Portal protein	N/A
Pfam	UHGV-2048465_36	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2048465_36	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2048465_36	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_37	phrog_21498	301.9	0	N/A	unknown function
UniRef90	UHGV-2048465_37	UniRef90_C7MM70	239.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-2048465_37	469378.Ccur_02830	239.0	0	DNA binding	N/A
COG	UHGV-2048465_37	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2048465_37	PF05869,TIGR01712	N/A	N/A	N/A	N/A
KOfam	UHGV-2048465_38	K01358	119.5	4.1e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2048465_38	phrog_94	187.8	0	head maturation protease	head and packaging
UniRef90	UHGV-2048465_38	UniRef90_A0A374NBM3	401.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2048465_38	1203606.HMPREF1526_00979	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2048465_38	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2048465_38	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2048465_38	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_39	phrog_10	151.3	8.40779e-45	major head protein	head and packaging
UniRef90	UHGV-2048465_39	UniRef90_A0A374N9V9	732.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2048465_39	1280689.AUJC01000011_gene1521	333.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-2048465_39	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2048465_39	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2048465_39	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2048465_39	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_40	phrog_5223	54.4	0.0000000000000018	neck protein	connector
eggNOG-mapper	UHGV-2048465_40	931626.Awo_c31020	47.8	0.00000905	N/A	N/A
NCBIFam	UHGV-2048465_40	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-2048465_40	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_41	phrog_1951	95.6	3e-28	head-tail adaptor	connector
UniRef90	UHGV-2048465_41	UniRef90_A0A374MZF9	184.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-2048465_41	1414720.CBYM010000040_gene1649	65.1	0.00000000000282	head-tail adaptor	N/A
COG	UHGV-2048465_41	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2048465_41	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-2048465_42	UniRef90_UPI001A9B6FBF	163.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2048465_42	642492.Clole_0747	133.0	5.02e-38	N/A	N/A
structural_annotation	UHGV-2048465_42	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2048465_43	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_44	phrog_885	134.5	6.6e-40	major tail protein	tail
UniRef90	UHGV-2048465_44	UniRef90_A0A101Y2E4	160.0	5.60519e-45	Big_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-2048465_44	1321814.HMPREF9089_00935	177.0	0	N/A	N/A
structural_annotation	UHGV-2048465_44	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2048465_45	272562.CA_C0058	49.3	0.00000532	N/A	N/A
PHROG	UHGV-2048465_47	phrog_23464	252.9	0	N/A	unknown function
eggNOG-mapper	UHGV-2048465_47	665950.HMPREF1025_02660	179.0	1.26117e-44	phage tail tape measure protein	N/A
COG	UHGV-2048465_47	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2048465_47	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_48	phrog_33	80.0	5.2e-23	distal tail protein Dit	tail
UniRef90	UHGV-2048465_48	UniRef90_UPI00189E4294	80.5	0.0000000000000144	phage tail family protein	N/A
eggNOG-mapper	UHGV-2048465_48	1160721.RBI_I01575	83.6	1.72e-16	Phage tail protein	N/A
COG	UHGV-2048465_48	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2048465_48	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2048465_49	phrog_1067	118.9	4.4e-35	minor head protein	head and packaging
UniRef90	UHGV-2048465_49	UniRef90_A0A348ZBV6	202.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2048465_49	1160721.RBI_I01574	125.0	1.32e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-2048465_49	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2048465_49	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2048465_49	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2048465_49	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-2048465_50	UniRef90_A0A1C6HHE5	120.0	2.36e-27	BppU_N domain-containing protein	N/A
Pfam	UHGV-2048465_50	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-2048465_50	PF10651,PF00541,NF040788	N/A	N/A	N/A	N/A