UHGV-2049291 (vOTU-009372)

Viral Genome: UHGV-2049291

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-2049291
vOTU ID	vOTU-009372
Representative Genome?	Yes
Source	IMGVR4
Original genome ID	3300029232\|Ga0168710_100007\|provirus_121314_162725
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.42 (High-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9648
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.83
Jumbo phage	No

Genome content
Genome length (bp)	41,412
GC content	51.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	93%
Average CDS length (bps)	672.32
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2049291_1	UniRef90_A0A350U042	399.0	0	MuF_C domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-2049291_1	1408437.JNJN01000039_gene389	414.0	0	heme binding	N/A
COG	UHGV-2049291_1	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
KOfam	UHGV-2049291_3	K01371	59.8	3.9e-17	CTSK; cathepsin K [EC:3.4.22.38]	N/A
PHROG	UHGV-2049291_3	phrog_16701	59.7	8.5e-18	peptidase	other
UniRef90	UHGV-2049291_3	UniRef90_A0A396NGZ7	781.0	0	Pept_C1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2049291_3	588581.Cpap_1819	111.0	1.84e-25	Papain family cysteine protease	N/A
Pfam	UHGV-2049291_3	PF00112	N/A	N/A	Papain family cysteine protease	Peptidase_C1
Pfam	UHGV-2049291_3	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
COG	UHGV-2049291_3	COG4870	N/A	N/A	Cysteine protease, C1A family	N/A
structural_annotation	UHGV-2049291_3	PF00112,PF07833,COG4870	N/A	N/A	N/A	N/A
KOfam	UHGV-2049291_4	K17733	118.3	6.5e-35	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-2049291_4	phrog_6523	120.2	2.4e-35	endolysin	lysis
UniRef90	UHGV-2049291_4	UniRef90_A0A401LGC2	371.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2049291_4	642492.Clole_2733	171.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-2049291_4	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-2049291_4	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
PHROG	UHGV-2049291_5	phrog_199	59.4	4.2e-17	holin	lysis
UniRef90	UHGV-2049291_5	UniRef90_R5ABW3	308.0	0	Putative holin	N/A
eggNOG-mapper	UHGV-2049291_5	411460.RUMTOR_02100	144.0	6.89999e-42	N/A	N/A
Pfam	UHGV-2049291_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2049291_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-2049291_5	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_6	phrog_2310	65.7	3.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-2049291_6	1460635.JCM19038_2823	50.4	0.0000000495	N/A	N/A
structural_annotation	UHGV-2049291_8	PF13157	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_9	phrog_18723	52.8	3.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-2049291_10	665956.HMPREF1032_03261	63.9	0.00000000692	N/A	N/A
PHROG	UHGV-2049291_11	phrog_3287	146.2	2.20004e-43	virion structural protein	head and packaging
eggNOG-mapper	UHGV-2049291_11	693746.OBV_23870	553.0	0	N/A	N/A
structural_annotation	UHGV-2049291_11	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_12	phrog_13046	43.2	0.00000000000013	N/A	unknown function
eggNOG-mapper	UHGV-2049291_12	693746.OBV_23880	88.2	1.09e-18	N/A	N/A
structural_annotation	UHGV-2049291_12	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_13	phrog_371	134.1	1.1e-39	major head protein	head and packaging
UniRef90	UHGV-2049291_13	UniRef90_R5AAY6	669.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-2049291_13	1226322.HMPREF1545_03848	288.0	0	N/A	N/A
Pfam	UHGV-2049291_13	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-2049291_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_14	phrog_24113	49.4	0.000000000000053	N/A	unknown function
structural_annotation	UHGV-2049291_14	PF11133,COG5471	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2049291_15	693746.OBV_23910	81.6	0.00000000000000566	N/A	N/A
PHROG	UHGV-2049291_18	phrog_156	275.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-2049291_18	1519439.JPJG01000060_gene1886	479.0	0	N/A	N/A
structural_annotation	UHGV-2049291_18	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2049291_19	K04763	109.4	4.3e-32	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-2049291_19	phrog_216	154.2	0	integrase	integration and excision
UniRef90	UHGV-2049291_19	UniRef90_R5AM78	372.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-2049291_19	97138.C820_00621	198.0	0	integrase family	N/A
Pfam	UHGV-2049291_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2049291_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2049291_19	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_20	phrog_24361	101.3	7.1e-30	terminase	head and packaging
UniRef90	UHGV-2049291_20	UniRef90_R5AHR8	1121.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-2049291_20	693746.OBV_23980	533.0	0	phage Terminase large subunit	N/A
COG	UHGV-2049291_20	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-2049291_20	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_21	phrog_309	67.4	1.8e-19	terminase small subunit	head and packaging
UniRef90	UHGV-2049291_21	UniRef90_A0A316MAA8	91.3	8e-20	Xaa-His dipeptidase	N/A
eggNOG-mapper	UHGV-2049291_21	97138.C820_00620	127.0	1.84e-34	transposase activity	N/A
COG	UHGV-2049291_21	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-2049291_21	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-2049291_23	K06218	77.9	2.8e-22	relE, stbE; mRNA interferase RelE/StbE	N/A
PHROG	UHGV-2049291_23	phrog_1213	78.1	1.1e-22	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2049291_23	UniRef90_R5AEV9	163.0	0	Cytotoxic translational repressor of toxin-antitoxin stability system	N/A
eggNOG-mapper	UHGV-2049291_23	97139.C824_00468	128.0	5.69e-38	ParE toxin of type II toxin-antitoxin system, parDE	N/A
Pfam	UHGV-2049291_23	PF05016	N/A	N/A	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
COG	UHGV-2049291_23	COG2026	N/A	N/A	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	N/A
structural_annotation	UHGV-2049291_23	PF05016,TIGR00053,COG2026	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2049291_24	1235792.C808_02931	105.0	8.88e-29	N/A	N/A
UniRef90	UHGV-2049291_25	UniRef90_A0A396PTM6	100.0	1.71e-26	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2049291_25	1235799.C818_04243	81.3	1.15e-19	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2049291_25	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-2049291_25	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2049291_27	PF20549,COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2049291_28	PF07374,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-2049291_30	K02314	381.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-2049291_30	phrog_19	281.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2049291_30	UniRef90_R5AEW4	858.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-2049291_30	293826.Amet_4768	275.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-2049291_30	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-2049291_30	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-2049291_30	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-2049291_30	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_31	phrog_6251	83.9	2.4e-24	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2049291_31	UniRef90_R5AB02	401.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-2049291_31	1231057.AMGD01000018_gene3636	103.0	4.54e-24	Conserved phage C-terminus (Phg_2220_C)	N/A
COG	UHGV-2049291_31	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-2049291_33	phrog_17690	42.0	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-2049291_33	476272.RUMHYD_03925	53.9	0.0000000212	N/A	N/A
eggNOG-mapper	UHGV-2049291_35	760568.Desku_0919	89.7	2.16e-19	N/A	N/A
structural_annotation	UHGV-2049291_35	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-2049291_39	K22300	47.6	0.0000000000000096	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2049291_39	phrog_8	48.7	0.0000000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-2049291_39	UniRef90_A0A401LG78	258.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2049291_39	1378168.N510_00479	55.8	0.0000000354	sequence-specific DNA binding	N/A
Pfam	UHGV-2049291_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2049291_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2049291_39	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_42	phrog_9467	207.7	0	N/A	unknown function
UniRef90	UHGV-2049291_42	UniRef90_UPI001C3853B3	157.0	1.4013e-45	Gp49 family protein	N/A
eggNOG-mapper	UHGV-2049291_42	1226322.HMPREF1545_00781	196.0	0	N/A	N/A
Pfam	UHGV-2049291_42	PF13876	N/A	N/A	N/A	Phage_gp49_66
dbAPIS	UHGV-2049291_42	APIS043	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_43	phrog_774	54.4	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-2049291_43	397290.C810_05225	68.9	0.000000000000728	N/A	N/A
KOfam	UHGV-2049291_44	K03111	134.2	1.5e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2049291_44	phrog_44	135.2	4.3e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2049291_44	UniRef90_R5AMA1	256.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2049291_44	97138.C820_02339	187.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2049291_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2049291_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2049291_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2049291_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2049291_44	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_45	phrog_1029	279.3	0	N/A	unknown function
eggNOG-mapper	UHGV-2049291_45	1510440.A0A068EPX8_9CAUD	214.0	0	N/A	N/A
structural_annotation	UHGV-2049291_45	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-2049291_46	phrog_997	106.6	1.9e-31	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2049291_46	UniRef90_A0A350U067	246.0	0	Replication terminator protein	N/A
eggNOG-mapper	UHGV-2049291_46	1443125.Z962_p0033	77.0	2.55e-16	replication terminator protein, phage associated	N/A
KOfam	UHGV-2049291_53	K18830	45.9	0.00000000000098	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2049291_53	phrog_4	42.3	0.000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-2049291_53	UniRef90_R5AEY7	244.0	0	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-2049291_53	1235797.C816_03553	109.0	1.95e-28	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-2049291_53	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-2049291_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2049291_53	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2049291_55	1163671.JAGI01000002_gene1685	85.5	6.97e-19	Flagellar rod assembly protein muramidase FlgJ	N/A
COG	UHGV-2049291_55	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
KOfam	UHGV-2049291_56	K06400	286.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2049291_56	phrog_95	300.5	0	integrase	integration and excision
UniRef90	UHGV-2049291_56	UniRef90_R5AMB7	1022.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-2049291_56	697281.Mahau_2563	492.0	0	resolvase	N/A
Pfam	UHGV-2049291_56	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2049291_56	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-2049291_56	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2049291_56	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-2049291_57	K06334	88.8	6.6e-26	cotJC; spore coat protein JC	N/A
PHROG	UHGV-2049291_57	phrog_7573	67.9	1.4e-19	N/A	unknown function
UniRef90	UHGV-2049291_57	UniRef90_UPI001C0F924C	126.0	6.23e-36	manganese catalase family protein	N/A
eggNOG-mapper	UHGV-2049291_57	97138.C820_02770	113.0	8.35e-31	PFAM Manganese containing catalase	N/A
Pfam	UHGV-2049291_57	PF05067	N/A	N/A	Manganese containing catalase	Mn_catalase
COG	UHGV-2049291_57	COG3546	N/A	N/A	Mn-containing catalase (includes spore coat protein CotJC)	N/A